RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 TEX35Q5T0J7 233 aa19.89■□□□□ 0.77
CLN3-240ENST00000631023 ARHGAP40Q5TG30 622 aa19.89■□□□□ 0.77
CLN3-240ENST00000631023 TLDC1Q6P9B6 456 aa19.89■□□□□ 0.77
CLN3-240ENST00000631023 INO80CQ6PI98 192 aaPredicted RBP19.89■□□□□ 0.77
CLN3-240ENST00000631023 RAPH1Q70E73 1250 aa19.89■□□□□ 0.77
CLN3-240ENST00000631023 GPR155Q7Z3F1 870 aa19.89■□□□□ 0.77
CLN3-240ENST00000631023 ADAMTSL2Q86TH1 951 aa19.89■□□□□ 0.77
CLN3-240ENST00000631023 LRRC56Q8IYG6 542 aaPredicted RBP19.89■□□□□ 0.77
CLN3-240ENST00000631023 ANKRD49Q8WVL7 239 aa19.89■□□□□ 0.77
CLN3-240ENST00000631023 MRRFQ96E11 262 aaKnown RBP19.89■□□□□ 0.77
CLN3-240ENST00000631023 MED8Q96G25 268 aa19.89■□□□□ 0.77
CLN3-240ENST00000631023 LRFN5Q96NI6 719 aa19.89■□□□□ 0.77
CLN3-240ENST00000631023 DERL2Q9GZP9 239 aa19.89■□□□□ 0.77
CLN3-240ENST00000631023 LHX9Q9NQ69 397 aa19.89■□□□□ 0.77
CLN3-240ENST00000631023 SNX7Q9UNH6 387 aa19.89■□□□□ 0.77
CLN3-240ENST00000631023 LHX6Q9UPM6 363 aa19.89■□□□□ 0.77
CLN3-240ENST00000631023 IKBKGQ9Y6K9 419 aa19.89■□□□□ 0.77
CLN3-240ENST00000631023 FAM208BQ5VWN6 2430 aa19.89■□□□□ 0.77
CLN3-240ENST00000631023 LOC101059948A0A1B0GTJ6 334 aa19.88■□□□□ 0.77
CLN3-240ENST00000631023 PHGDHO43175 533 aaKnown RBP19.88■□□□□ 0.77
CLN3-240ENST00000631023 EFSO43281 561 aa19.88■□□□□ 0.77
CLN3-240ENST00000631023 LIFP15018 202 aa19.88■□□□□ 0.77
CLN3-240ENST00000631023 CRABP2P29373 138 aa19.88■□□□□ 0.77
CLN3-240ENST00000631023 ZKSCAN8Q15776 578 aaPredicted RBP19.88■□□□□ 0.77
CLN3-240ENST00000631023 UAP1Q16222 522 aaPredicted RBP19.88■□□□□ 0.77
CLN3-240ENST00000631023 SBSNQ6UWP8 590 aa19.88■□□□□ 0.77
CLN3-240ENST00000631023 EIF1ADQ8N9N8 165 aaKnown RBP19.88■□□□□ 0.77
CLN3-240ENST00000631023 SNRNP27Q8WVK2 155 aaKnown RBP19.88■□□□□ 0.77
CLN3-240ENST00000631023 CRELD1Q96HD1 420 aa19.88■□□□□ 0.77
CLN3-240ENST00000631023 MGAQ8IWI9 3026 aa19.88■□□□□ 0.77
CLN3-240ENST00000631023 A0A087WUV0 522 aaPredicted RBP19.87■□□□□ 0.77
CLN3-240ENST00000631023 ZNF749O43361 778 aa19.87■□□□□ 0.77
CLN3-240ENST00000631023 HCRTR1O43613 425 aa19.87■□□□□ 0.77
CLN3-240ENST00000631023 SRPX2O60687 465 aaPredicted RBP19.87■□□□□ 0.77
CLN3-240ENST00000631023 KRT37O76014 449 aa19.87■□□□□ 0.77
CLN3-240ENST00000631023 WISP3O95389 354 aaPredicted RBP19.87■□□□□ 0.77
CLN3-240ENST00000631023 GUCA1CO95843 209 aa19.87■□□□□ 0.77
CLN3-240ENST00000631023 CCDC166P0CW27 439 aa19.87■□□□□ 0.77
CLN3-240ENST00000631023 HRH2P25021 359 aa19.87■□□□□ 0.77
CLN3-240ENST00000631023 TBPL1P62380 186 aa19.87■□□□□ 0.77
CLN3-240ENST00000631023 SRSF6Q13247 344 aaKnown RBP19.87■□□□□ 0.77
CLN3-240ENST00000631023 NAE1Q13564 534 aa19.87■□□□□ 0.77
CLN3-240ENST00000631023 TCTE1Q5JU00 501 aa19.87■□□□□ 0.77
CLN3-240ENST00000631023 PRAMEF17Q5VTA0 474 aa19.87■□□□□ 0.77
CLN3-240ENST00000631023 MBOAT1Q6ZNC8 495 aa19.87■□□□□ 0.77
CLN3-240ENST00000631023 FRA10AC1Q70Z53 315 aa19.87■□□□□ 0.77
CLN3-240ENST00000631023 TRMT10CQ7L0Y3 403 aaKnown RBP19.87■□□□□ 0.77
CLN3-240ENST00000631023 FBXL8Q96CD0 374 aa19.87■□□□□ 0.77
CLN3-240ENST00000631023 PLCD4Q9BRC7 762 aa19.87■□□□□ 0.77
CLN3-240ENST00000631023 SPRTNQ9H040 489 aaPredicted RBP19.87■□□□□ 0.77
CLN3-240ENST00000631023 ATG10Q9H0Y0 220 aa19.87■□□□□ 0.77
CLN3-240ENST00000631023 OR2A25A4D2G3 310 aa19.87■□□□□ 0.77
CLN3-240ENST00000631023 NPEPPSL1A6NEC2 478 aa19.87■□□□□ 0.77
CLN3-240ENST00000631023 MEN1O00255 615 aa19.87■□□□□ 0.77
CLN3-240ENST00000631023 CDC7O00311 574 aa19.87■□□□□ 0.77
CLN3-240ENST00000631023 ZSCAN9O15535 394 aaPredicted RBP19.87■□□□□ 0.77
CLN3-240ENST00000631023 INHBAP08476 426 aa19.87■□□□□ 0.77
CLN3-240ENST00000631023 TCN2P20062 427 aa19.87■□□□□ 0.77
CLN3-240ENST00000631023 DLSTP36957 453 aa19.87■□□□□ 0.77
CLN3-240ENST00000631023 ATP6V0D1P61421 351 aa19.87■□□□□ 0.77
CLN3-240ENST00000631023 PRAMEF13Q5VWM6 474 aa19.87■□□□□ 0.77
CLN3-240ENST00000631023 CAPN13Q6MZZ7 669 aaPredicted RBP19.87■□□□□ 0.77
CLN3-240ENST00000631023 CCDC91Q7Z6B0 441 aa19.87■□□□□ 0.77
CLN3-240ENST00000631023 MR1Q95460 341 aa19.87■□□□□ 0.77
CLN3-240ENST00000631023 ALKBH8Q96BT7 664 aaKnown RBP19.87■□□□□ 0.77
CLN3-240ENST00000631023 SELENOSQ9BQE4 189 aa19.87■□□□□ 0.77
CLN3-240ENST00000631023 NDC1Q9BTX1 674 aa19.87■□□□□ 0.77
CLN3-240ENST00000631023 SLC6A20Q9NP91 592 aa19.87■□□□□ 0.77
CLN3-240ENST00000631023 KCND3Q9UK17 655 aa19.87■□□□□ 0.77
CLN3-240ENST00000631023 SRPK3Q9UPE1 567 aa19.87■□□□□ 0.77
CLN3-240ENST00000631023 OARD1Q9Y530 152 aa19.87■□□□□ 0.77
CLN3-240ENST00000631023 ITPR1Q14643 2758 aa19.87■□□□□ 0.77
CLN3-240ENST00000631023 H3BMH7 237 aa19.86■□□□□ 0.77
CLN3-240ENST00000631023 CTSVO60911 334 aa19.86■□□□□ 0.77
CLN3-240ENST00000631023 ANXA5P08758 320 aa19.86■□□□□ 0.77
CLN3-240ENST00000631023 PMS2P54278 862 aa19.86■□□□□ 0.77
CLN3-240ENST00000631023 YBX1P67809 324 aaKnown RBP19.86■□□□□ 0.77
CLN3-240ENST00000631023 CDKL1Q00532 357 aa19.86■□□□□ 0.77
CLN3-240ENST00000631023 RELAQ04206 551 aa19.86■□□□□ 0.77
CLN3-240ENST00000631023 PPP1R3AQ16821 1122 aa19.86■□□□□ 0.77
CLN3-240ENST00000631023 MROH9Q5TGP6 573 aa19.86■□□□□ 0.77
CLN3-240ENST00000631023 TAOK1Q7L7X3 1001 aa19.86■□□□□ 0.77
CLN3-240ENST00000631023 TBC1D1Q86TI0 1168 aaPredicted RBP19.86■□□□□ 0.77
CLN3-240ENST00000631023 ZNF655Q8N720 491 aaPredicted RBP19.86■□□□□ 0.77
CLN3-240ENST00000631023 SLC38A9Q8NBW4 561 aa19.86■□□□□ 0.77
CLN3-240ENST00000631023 SLC45A3Q96JT2 553 aa19.86■□□□□ 0.77
CLN3-240ENST00000631023 UBXN10Q96LJ8 280 aa19.86■□□□□ 0.77
CLN3-240ENST00000631023 ZFYVE21Q9BQ24 234 aa19.86■□□□□ 0.77
CLN3-240ENST00000631023 DPH2Q9BQC3 489 aaPredicted RBP19.86■□□□□ 0.77
CLN3-240ENST00000631023 HAUS8Q9BT25 410 aa19.86■□□□□ 0.77
CLN3-240ENST00000631023 SGPP1Q9BX95 441 aa19.86■□□□□ 0.77
CLN3-240ENST00000631023 CROTQ9UKG9 612 aa19.86■□□□□ 0.77
CLN3-240ENST00000631023 IKZF3Q9UKT9 509 aa19.86■□□□□ 0.77
CLN3-240ENST00000631023 PCDHGA4Q9Y5G9 962 aa19.86■□□□□ 0.77
CLN3-240ENST00000631023 NBEAQ8NFP9 2946 aa19.86■□□□□ 0.77
CLN3-240ENST00000631023 A0A0J9YVX5 310 aa19.85■□□□□ 0.77
CLN3-240ENST00000631023 C21orf140B9A014 251 aa19.85■□□□□ 0.77
CLN3-240ENST00000631023 MSH2P43246 934 aa19.85■□□□□ 0.77
CLN3-240ENST00000631023 HNMTP50135 292 aa19.85■□□□□ 0.77
CLN3-240ENST00000631023 GPS2Q13227 327 aa19.85■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms