RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 ZNF839A8K0R7 811 aa13.77□□□□□ -0.21
USP39-220ENST00000613444 ANKRD65E5RJM6 399 aa13.77□□□□□ -0.21
USP39-220ENST00000613444 H0YIV9 168 aa13.77□□□□□ -0.21
USP39-220ENST00000613444 UBDO15205 165 aa13.77□□□□□ -0.21
USP39-220ENST00000613444 GPR37L1O60883 481 aa13.77□□□□□ -0.21
USP39-220ENST00000613444 KRT6AP02538 564 aa13.77□□□□□ -0.21
USP39-220ENST00000613444 KRT6BP04259 564 aa13.77□□□□□ -0.21
USP39-220ENST00000613444 CTSEP14091 401 aa13.77□□□□□ -0.21
USP39-220ENST00000613444 LBPP18428 481 aa13.77□□□□□ -0.21
USP39-220ENST00000613444 XRCC1P18887 633 aaPredicted RBP13.77□□□□□ -0.21
USP39-220ENST00000613444 PSMB5P28074 263 aa13.77□□□□□ -0.21
USP39-220ENST00000613444 HNF4AP41235 474 aa13.77□□□□□ -0.21
USP39-220ENST00000613444 SCTRP47872 440 aa13.77□□□□□ -0.21
USP39-220ENST00000613444 KRT6CP48668 564 aa13.77□□□□□ -0.21
USP39-220ENST00000613444 NEK2P51955 445 aa13.77□□□□□ -0.21
USP39-220ENST00000613444 NCALDP61601 193 aa13.77□□□□□ -0.21
USP39-220ENST00000613444 UBE2IP63279 158 aaKnown RBP13.77□□□□□ -0.21
USP39-220ENST00000613444 KRT33BQ14525 404 aa13.77□□□□□ -0.21
USP39-220ENST00000613444 C6orf136Q5SQH8 315 aa13.77□□□□□ -0.21
USP39-220ENST00000613444 FRG2Q64ET8 278 aa13.77□□□□□ -0.21
USP39-220ENST00000613444 ATG9BQ674R7 924 aa13.77□□□□□ -0.21
USP39-220ENST00000613444 TAF8Q7Z7C8 310 aa13.77□□□□□ -0.21
USP39-220ENST00000613444 TMPRSS11BQ86T26 416 aa13.77□□□□□ -0.21
USP39-220ENST00000613444 HOMEZQ8IX15 550 aa13.77□□□□□ -0.21
USP39-220ENST00000613444 DTWD2Q8NBA8 298 aa13.77□□□□□ -0.21
USP39-220ENST00000613444 NELL1Q92832 810 aa13.77□□□□□ -0.21
USP39-220ENST00000613444 FRG2BQ96QU4 278 aa13.77□□□□□ -0.21
USP39-220ENST00000613444 HAUS8Q9BT25 410 aa13.77□□□□□ -0.21
USP39-220ENST00000613444 RAB11FIP5Q9BXF6 653 aa13.77□□□□□ -0.21
USP39-220ENST00000613444 SPNS1Q9H2V7 528 aa13.77□□□□□ -0.21
USP39-220ENST00000613444 SLC40A1Q9NP59 571 aa13.77□□□□□ -0.21
USP39-220ENST00000613444 PFDN4Q9NQP4 134 aa13.77□□□□□ -0.21
USP39-220ENST00000613444 TAC3Q9UHF0 121 aa13.77□□□□□ -0.21
USP39-220ENST00000613444 SNX6Q9UNH7 406 aa13.77□□□□□ -0.21
USP39-220ENST00000613444 DYRK1BQ9Y463 629 aa13.77□□□□□ -0.21
USP39-220ENST00000613444 GOLGA4Q13439 2230 aaKnown RBP13.77□□□□□ -0.21
USP39-220ENST00000613444 HRO43593 1189 aa13.76□□□□□ -0.21
USP39-220ENST00000613444 PEX11AO75192 247 aa13.76□□□□□ -0.21
USP39-220ENST00000613444 C1GALT1C1LP0DN25 315 aa13.76□□□□□ -0.21
USP39-220ENST00000613444 PEBP1P30086 187 aaKnown RBP13.76□□□□□ -0.21
USP39-220ENST00000613444 AFF3P51826 1226 aaKnown RBP13.76□□□□□ -0.21
USP39-220ENST00000613444 NXPE4Q6UWF7 544 aa13.76□□□□□ -0.21
USP39-220ENST00000613444 FAM129CQ86XR2 697 aa13.76□□□□□ -0.21
USP39-220ENST00000613444 OR2A1Q8NGT9 310 aa13.76□□□□□ -0.21
USP39-220ENST00000613444 SLC7A6OSQ96CW6 309 aaPredicted RBP13.76□□□□□ -0.21
USP39-220ENST00000613444 MTFMTQ96DP5 389 aaKnown RBP13.76□□□□□ -0.21
USP39-220ENST00000613444 NSL1Q96IY1 281 aa13.76□□□□□ -0.21
USP39-220ENST00000613444 ACAT2Q9BWD1 397 aa13.76□□□□□ -0.21
USP39-220ENST00000613444 ACPTQ9BZG2 426 aa13.76□□□□□ -0.21
USP39-220ENST00000613444 RIC8BQ9NVN3 520 aa13.76□□□□□ -0.21
USP39-220ENST00000613444 GEMIN8Q9NWZ8 242 aaKnown RBP13.76□□□□□ -0.21
USP39-220ENST00000613444 MDC1Q14676 2089 aaKnown RBP13.76□□□□□ -0.21
USP39-220ENST00000613444 SLC22A2O15244 555 aa13.76□□□□□ -0.21
USP39-220ENST00000613444 ADSLP30566 484 aaPredicted RBP13.76□□□□□ -0.21
USP39-220ENST00000613444 HMGCS1Q01581 520 aa13.76□□□□□ -0.21
USP39-220ENST00000613444 NAA25Q14CX7 972 aa13.76□□□□□ -0.21
USP39-220ENST00000613444 SGO1Q5FBB7 561 aa13.76□□□□□ -0.21
USP39-220ENST00000613444 THEMIS2Q5TEJ8 643 aa13.76□□□□□ -0.21
USP39-220ENST00000613444 ADNP2Q6IQ32 1131 aa13.76□□□□□ -0.21
USP39-220ENST00000613444 RAB42Q8N4Z0 105 aa13.76□□□□□ -0.21
USP39-220ENST00000613444 SLC37A2Q8TED4 501 aa13.76□□□□□ -0.21
USP39-220ENST00000613444 SELENOMQ8WWX9 145 aa13.76□□□□□ -0.21
USP39-220ENST00000613444 JPH3Q8WXH2 748 aaPredicted RBP13.76□□□□□ -0.21
USP39-220ENST00000613444 CXorf40BQ96DE9 158 aa13.76□□□□□ -0.21
USP39-220ENST00000613444 PCBD2Q9H0N5 130 aa13.76□□□□□ -0.21
USP39-220ENST00000613444 ELOVL6Q9H5J4 265 aa13.76□□□□□ -0.21
USP39-220ENST00000613444 TMEM74BQ9NUR3 256 aa13.76□□□□□ -0.21
USP39-220ENST00000613444 CAPN7Q9Y6W3 813 aa13.76□□□□□ -0.21
USP39-220ENST00000613444 ARID1BQ8NFD5 2236 aaPredicted RBP13.76□□□□□ -0.21
USP39-220ENST00000613444 KIR2DS5A0A0G2JLQ3 304 aa13.75□□□□□ -0.21
USP39-220ENST00000613444 A0A0G2JNG1 304 aa13.75□□□□□ -0.21
USP39-220ENST00000613444 NPIPB8E9PQR5 432 aa13.75□□□□□ -0.21
USP39-220ENST00000613444 KIR2DS3K7RE56 304 aa13.75□□□□□ -0.21
USP39-220ENST00000613444 SLC28A1O00337 649 aa13.75□□□□□ -0.21
USP39-220ENST00000613444 CDH1P12830 882 aa13.75□□□□□ -0.21
USP39-220ENST00000613444 PIK3R1P27986 724 aa13.75□□□□□ -0.21
USP39-220ENST00000613444 ATP4BP51164 291 aa13.75□□□□□ -0.21
USP39-220ENST00000613444 KIR2DS5Q14953 304 aa13.75□□□□□ -0.21
USP39-220ENST00000613444 PLK5Q496M5 336 aa13.75□□□□□ -0.21
USP39-220ENST00000613444 LYSMD4Q5XG99 296 aa13.75□□□□□ -0.21
USP39-220ENST00000613444 RNF175Q8N4F7 328 aa13.75□□□□□ -0.21
USP39-220ENST00000613444 ABHD11Q8NFV4 315 aa13.75□□□□□ -0.21
USP39-220ENST00000613444 OR7G3Q8NG95 312 aa13.75□□□□□ -0.21
USP39-220ENST00000613444 EFCAB11Q9BUY7 163 aa13.75□□□□□ -0.21
USP39-220ENST00000613444 CUEDC1Q9NWM3 386 aaPredicted RBP13.75□□□□□ -0.21
USP39-220ENST00000613444 SPHK1Q9NYA1 384 aa13.75□□□□□ -0.21
USP39-220ENST00000613444 CPNE7Q9UBL6 633 aa13.75□□□□□ -0.21
USP39-220ENST00000613444 FBXO4Q9UKT5 387 aa13.75□□□□□ -0.21
USP39-220ENST00000613444 MYO15AQ9UKN7 3530 aa13.75□□□□□ -0.21
USP39-220ENST00000613444 IGKV1-8A0A0C4DH67 115 aa13.75□□□□□ -0.21
USP39-220ENST00000613444 OR5K4A6NMS3 321 aa13.75□□□□□ -0.21
USP39-220ENST00000613444 DIO3P55073 304 aa13.75□□□□□ -0.21
USP39-220ENST00000613444 ERVK-8P63133 956 aa13.75□□□□□ -0.21
USP39-220ENST00000613444 BNC1Q01954 994 aa13.75□□□□□ -0.21
USP39-220ENST00000613444 ZNF33BQ06732 778 aa13.75□□□□□ -0.21
USP39-220ENST00000613444 GPR18Q14330 331 aa13.75□□□□□ -0.21
USP39-220ENST00000613444 SLBPQ14493 270 aaKnown RBP eCLIP13.75□□□□□ -0.21
USP39-220ENST00000613444 SQLEQ14534 574 aa13.75□□□□□ -0.21
USP39-220ENST00000613444 KIAA0040Q15053 153 aa13.75□□□□□ -0.21
USP39-220ENST00000613444 ATP6AP1LQ52LC2 224 aa13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms