RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 GABRA4P48169 554 aa15.91■□□□□ 0.14
CCDC28A-202ENST00000611852 KCNC1P48547 511 aa15.91■□□□□ 0.14
CCDC28A-202ENST00000611852 PCBP4P57723 403 aaKnown RBP15.91■□□□□ 0.14
CCDC28A-202ENST00000611852 FAM83EQ2M2I3 478 aa15.91■□□□□ 0.14
CCDC28A-202ENST00000611852 THEMIS2Q5TEJ8 643 aa15.91■□□□□ 0.14
CCDC28A-202ENST00000611852 PPP1R3BQ86XI6 285 aa15.91■□□□□ 0.14
CCDC28A-202ENST00000611852 GPSM1Q86YR5 675 aa15.91■□□□□ 0.14
CCDC28A-202ENST00000611852 OR56A3Q8NH54 315 aa15.91■□□□□ 0.14
CCDC28A-202ENST00000611852 MTBPQ96DY7 904 aa15.91■□□□□ 0.14
CCDC28A-202ENST00000611852 MED8Q96G25 268 aa15.91■□□□□ 0.14
CCDC28A-202ENST00000611852 DPH7Q9BTV6 452 aa15.91■□□□□ 0.14
CCDC28A-202ENST00000611852 VPS11Q9H270 941 aa15.91■□□□□ 0.14
CCDC28A-202ENST00000611852 ALG9Q9H6U8 611 aa15.91■□□□□ 0.14
CCDC28A-202ENST00000611852 SLC6A20Q9NP91 592 aa15.91■□□□□ 0.14
CCDC28A-202ENST00000611852 MRPS30Q9NP92 439 aaKnown RBP15.91■□□□□ 0.14
CCDC28A-202ENST00000611852 SDK2Q58EX2 2172 aa15.91■□□□□ 0.14
CCDC28A-202ENST00000611852 MAP1BP46821 2468 aaKnown RBP15.91■□□□□ 0.14
CCDC28A-202ENST00000611852 CELSR3Q9NYQ7 3312 aa15.9■□□□□ 0.14
CCDC28A-202ENST00000611852 IGKV1-8A0A0C4DH67 115 aa15.9■□□□□ 0.14
CCDC28A-202ENST00000611852 CCND1P24385 295 aa15.9■□□□□ 0.14
CCDC28A-202ENST00000611852 CD82P27701 267 aa15.9■□□□□ 0.14
CCDC28A-202ENST00000611852 HNMTP50135 292 aa15.9■□□□□ 0.14
CCDC28A-202ENST00000611852 LARP7Q4G0J3 582 aaKnown RBP eCLIP15.9■□□□□ 0.14
CCDC28A-202ENST00000611852 PRAMEF13Q5VWM6 474 aa15.9■□□□□ 0.14
CCDC28A-202ENST00000611852 CAPN13Q6MZZ7 669 aaPredicted RBP15.9■□□□□ 0.14
CCDC28A-202ENST00000611852 TIFABQ6ZNK6 161 aa15.9■□□□□ 0.14
CCDC28A-202ENST00000611852 ZFAND4Q86XD8 727 aa15.9■□□□□ 0.14
CCDC28A-202ENST00000611852 DNAJC22Q8N4W6 341 aa15.9■□□□□ 0.14
CCDC28A-202ENST00000611852 OR8K5Q8NH50 307 aa15.9■□□□□ 0.14
CCDC28A-202ENST00000611852 STAG3L4Q8TBR4 150 aa15.9■□□□□ 0.14
CCDC28A-202ENST00000611852 PYCR2Q96C36 320 aa15.9■□□□□ 0.14
CCDC28A-202ENST00000611852 RHBDF1Q96CC6 855 aa15.9■□□□□ 0.14
CCDC28A-202ENST00000611852 GPR78Q96P69 363 aa15.9■□□□□ 0.14
CCDC28A-202ENST00000611852 EGFL8Q99944 293 aa15.9■□□□□ 0.14
CCDC28A-202ENST00000611852 SPRY4Q9C004 299 aa15.9■□□□□ 0.14
CCDC28A-202ENST00000611852 PCBD2Q9H0N5 130 aa15.9■□□□□ 0.14
CCDC28A-202ENST00000611852 PPCSQ9HAB8 311 aa15.9■□□□□ 0.14
CCDC28A-202ENST00000611852 FANCEQ9HB96 536 aa15.9■□□□□ 0.14
CCDC28A-202ENST00000611852 RNF112Q9ULX5 631 aa15.9■□□□□ 0.14
CCDC28A-202ENST00000611852 RAXQ9Y2V3 346 aa15.9■□□□□ 0.14
CCDC28A-202ENST00000611852 DMXL2Q8TDJ6 3036 aa15.9■□□□□ 0.14
CCDC28A-202ENST00000611852 URB1O60287 2271 aaKnown RBP15.9■□□□□ 0.14
CCDC28A-202ENST00000611852 SPTBP11277 2137 aa15.9■□□□□ 0.14
CCDC28A-202ENST00000611852 HEATR5BQ9P2D3 2071 aa15.89■□□□□ 0.14
CCDC28A-202ENST00000611852 IQANK1A0A1B0GTG1 560 aa15.89■□□□□ 0.13
CCDC28A-202ENST00000611852 OR2A25A4D2G3 310 aa15.89■□□□□ 0.13
CCDC28A-202ENST00000611852 NCF1BA6NI72 391 aaPredicted RBP15.89■□□□□ 0.13
CCDC28A-202ENST00000611852 NCF1CA8MVU1 366 aaPredicted RBP15.89■□□□□ 0.13
CCDC28A-202ENST00000611852 TMEM150CB9EJG8 249 aa15.89■□□□□ 0.13
CCDC28A-202ENST00000611852 IQCJ-SCHIP1C9J366 451 aaPredicted RBP15.89■□□□□ 0.13
CCDC28A-202ENST00000611852 NRP2O60462 931 aa15.89■□□□□ 0.13
CCDC28A-202ENST00000611852 RFPL1O75677 317 aa15.89■□□□□ 0.13
CCDC28A-202ENST00000611852 CCNDBP1O95273 360 aa15.89■□□□□ 0.13
CCDC28A-202ENST00000611852 TIAF1O95411 115 aa15.89■□□□□ 0.13
CCDC28A-202ENST00000611852 NUDT17P0C025 328 aa15.89■□□□□ 0.13
CCDC28A-202ENST00000611852 NCF1P14598 390 aaPredicted RBP15.89■□□□□ 0.13
CCDC28A-202ENST00000611852 NPPBP16860 134 aa15.89■□□□□ 0.13
CCDC28A-202ENST00000611852 ABATP80404 500 aa15.89■□□□□ 0.13
CCDC28A-202ENST00000611852 NAA25Q14CX7 972 aa15.89■□□□□ 0.13
CCDC28A-202ENST00000611852 ACAP2Q15057 778 aa15.89■□□□□ 0.13
CCDC28A-202ENST00000611852 DEFB110Q30KQ9 67 aa15.89■□□□□ 0.13
CCDC28A-202ENST00000611852 CDKL4Q5MAI5 379 aa15.89■□□□□ 0.13
CCDC28A-202ENST00000611852 PWWP2BQ6NUJ5 590 aa15.89■□□□□ 0.13
CCDC28A-202ENST00000611852 LCTLQ6UWM7 567 aa15.89■□□□□ 0.13
CCDC28A-202ENST00000611852 CNPY4Q8N129 248 aa15.89■□□□□ 0.13
CCDC28A-202ENST00000611852 PLD6Q8N2A8 252 aaKnown RBP15.89■□□□□ 0.13
CCDC28A-202ENST00000611852 OR1L3Q8NH93 324 aa15.89■□□□□ 0.13
CCDC28A-202ENST00000611852 ALKBH8Q96BT7 664 aaKnown RBP15.89■□□□□ 0.13
CCDC28A-202ENST00000611852 FCRL4Q96PJ5 515 aa15.89■□□□□ 0.13
CCDC28A-202ENST00000611852 OR4K3Q96R72 315 aa15.89■□□□□ 0.13
CCDC28A-202ENST00000611852 ATOH8Q96SQ7 321 aa15.89■□□□□ 0.13
CCDC28A-202ENST00000611852 ANKMY1Q9P2S6 941 aa15.89■□□□□ 0.13
CCDC28A-202ENST00000611852 TBK1Q9UHD2 729 aa15.89■□□□□ 0.13
CCDC28A-202ENST00000611852 CCDC189A1A4V9 331 aa15.89■□□□□ 0.13
CCDC28A-202ENST00000611852 CTSVO60911 334 aa15.89■□□□□ 0.13
CCDC28A-202ENST00000611852 KERAO60938 352 aa15.89■□□□□ 0.13
CCDC28A-202ENST00000611852 STK17BO94768 372 aa15.89■□□□□ 0.13
CCDC28A-202ENST00000611852 ZNF28P17035 718 aa15.89■□□□□ 0.13
CCDC28A-202ENST00000611852 EIF2S3P41091 472 aaKnown RBP15.89■□□□□ 0.13
CCDC28A-202ENST00000611852 SLCO1A2P46721 670 aa15.89■□□□□ 0.13
CCDC28A-202ENST00000611852 GLRBP48167 497 aa15.89■□□□□ 0.13
CCDC28A-202ENST00000611852 PTCHD3Q3KNS1 767 aa15.89■□□□□ 0.13
CCDC28A-202ENST00000611852 ZNF425Q6IV72 752 aa15.89■□□□□ 0.13
CCDC28A-202ENST00000611852 TDRPQ86YL5 185 aa15.89■□□□□ 0.13
CCDC28A-202ENST00000611852 MREGQ8N565 214 aa15.89■□□□□ 0.13
CCDC28A-202ENST00000611852 ZNF248Q8NDW4 579 aa15.89■□□□□ 0.13
CCDC28A-202ENST00000611852 RHEBL1Q8TAI7 183 aa15.89■□□□□ 0.13
CCDC28A-202ENST00000611852 EPS8L3Q8TE67 593 aaKnown RBP15.89■□□□□ 0.13
CCDC28A-202ENST00000611852 MZB1Q8WU39 189 aa15.89■□□□□ 0.13
CCDC28A-202ENST00000611852 PLCD4Q9BRC7 762 aa15.89■□□□□ 0.13
CCDC28A-202ENST00000611852 ULBP3Q9BZM4 244 aa15.89■□□□□ 0.13
CCDC28A-202ENST00000611852 CUEDC1Q9NWM3 386 aaPredicted RBP15.89■□□□□ 0.13
CCDC28A-202ENST00000611852 EURLQ9NYK6 297 aa15.89■□□□□ 0.13
CCDC28A-202ENST00000611852 SERTAD3Q9UJW9 196 aa15.89■□□□□ 0.13
CCDC28A-202ENST00000611852 PILRAQ9UKJ1 303 aa15.89■□□□□ 0.13
CCDC28A-202ENST00000611852 PLCL2Q9UPR0 1127 aa15.89■□□□□ 0.13
CCDC28A-202ENST00000611852 SH2B3Q9UQQ2 575 aa15.89■□□□□ 0.13
CCDC28A-202ENST00000611852 TMEM184BQ9Y519 407 aaPredicted RBP15.89■□□□□ 0.13
CCDC28A-202ENST00000611852 H3BMH7 237 aa15.88■□□□□ 0.13
CCDC28A-202ENST00000611852 STMND1H3BQB6 276 aa15.88■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms