RNA–Protein interactions for RNA: ENST00000601341.5

VRK3-223, Transcript of vaccinia related kinase 3, human

APPRIS ALT2 TSL 2 BASIC

Gene VRK3, Length 1,777 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VRK3-223	ENST00000601341	UBE2R2	Q712K3	238 aa	Predicted RBP	11.36	□□□□□ -0.59
VRK3-223	ENST00000601341	RPS27L	Q71UM5	84 aa	Known RBP	11.36	□□□□□ -0.59
VRK3-223	ENST00000601341	ERMP1	Q7Z2K6	904 aa		11.36	□□□□□ -0.59
VRK3-223	ENST00000601341	LILRA3	Q8N6C8	439 aa	Predicted RBP	11.36	□□□□□ -0.59
VRK3-223	ENST00000601341	MFSD2A	Q8NA29	543 aa		11.36	□□□□□ -0.59
VRK3-223	ENST00000601341	FAM174A	Q8TBP5	190 aa		11.36	□□□□□ -0.59
VRK3-223	ENST00000601341	TUBGCP3	Q96CW5	907 aa		11.36	□□□□□ -0.59
VRK3-223	ENST00000601341	HIST1H2AH	Q96KK5	128 aa		11.36	□□□□□ -0.59
VRK3-223	ENST00000601341	WDR92	Q96MX6	357 aa		11.36	□□□□□ -0.59
VRK3-223	ENST00000601341	HIST1H2AJ	Q99878	128 aa		11.36	□□□□□ -0.59
VRK3-223	ENST00000601341	TIMM29	Q9BSF4	260 aa		11.36	□□□□□ -0.59
VRK3-223	ENST00000601341	H2AFJ	Q9BTM1	129 aa		11.36	□□□□□ -0.59
VRK3-223	ENST00000601341	TRIM4	Q9C037	500 aa		11.36	□□□□□ -0.59
VRK3-223	ENST00000601341	TUBB1	Q9H4B7	451 aa		11.36	□□□□□ -0.59
VRK3-223	ENST00000601341	PARVB	Q9HBI1	364 aa		11.36	□□□□□ -0.59
VRK3-223	ENST00000601341	SLC52A3	Q9NQ40	469 aa		11.36	□□□□□ -0.59
VRK3-223	ENST00000601341	AIG1	Q9NVV5	245 aa		11.36	□□□□□ -0.59
VRK3-223	ENST00000601341	MAP10	Q9P2G4	905 aa		11.36	□□□□□ -0.59
VRK3-223	ENST00000601341	MOSPD1	Q9UJG1	213 aa		11.36	□□□□□ -0.59
VRK3-223	ENST00000601341	PCTP	Q9UKL6	214 aa		11.36	□□□□□ -0.59
VRK3-223	ENST00000601341	PCYT1B	Q9Y5K3	369 aa	Predicted RBP	11.36	□□□□□ -0.59
VRK3-223	ENST00000601341	CCDC163	A0A0D9SF12	145 aa		11.35	□□□□□ -0.59
VRK3-223	ENST00000601341	ATP6AP2	A0A1C7CYW4	349 aa		11.35	□□□□□ -0.59
VRK3-223	ENST00000601341	ENO4	A6NNW6	628 aa		11.35	□□□□□ -0.59
VRK3-223	ENST00000601341	METTL12	A8MUP2	240 aa		11.35	□□□□□ -0.59
VRK3-223	ENST00000601341	FXYD1	O00168	92 aa		11.35	□□□□□ -0.59
VRK3-223	ENST00000601341	TNFRSF10C	O14798	259 aa		11.35	□□□□□ -0.59
VRK3-223	ENST00000601341	MAP3K13	O43283	966 aa		11.35	□□□□□ -0.59
VRK3-223	ENST00000601341	EED	O75530	441 aa	Known RBP	11.35	□□□□□ -0.59
VRK3-223	ENST00000601341	CRCP	O75575	148 aa		11.35	□□□□□ -0.59
VRK3-223	ENST00000601341	ATP6AP2	O75787	350 aa		11.35	□□□□□ -0.59
VRK3-223	ENST00000601341	SIX3	O95343	332 aa	Predicted RBP	11.35	□□□□□ -0.59
VRK3-223	ENST00000601341	FUCA1	P04066	466 aa		11.35	□□□□□ -0.59
VRK3-223	ENST00000601341	UMPS	P11172	480 aa		11.35	□□□□□ -0.59
VRK3-223	ENST00000601341	HGF	P14210	728 aa		11.35	□□□□□ -0.59
VRK3-223	ENST00000601341	TCN1	P20061	433 aa	Predicted RBP	11.35	□□□□□ -0.59
VRK3-223	ENST00000601341	PDHA2	P29803	388 aa		11.35	□□□□□ -0.59
VRK3-223	ENST00000601341	MSX2	P35548	267 aa	Predicted RBP	11.35	□□□□□ -0.59
VRK3-223	ENST00000601341	RPIA	P49247	311 aa		11.35	□□□□□ -0.59
VRK3-223	ENST00000601341	HK3	P52790	923 aa		11.35	□□□□□ -0.59
VRK3-223	ENST00000601341	ERVK-8	P63133	956 aa		11.35	□□□□□ -0.59
VRK3-223	ENST00000601341	RPL6	Q02878	288 aa	Known RBP	11.35	□□□□□ -0.59
VRK3-223	ENST00000601341	ABR	Q12979	859 aa		11.35	□□□□□ -0.59
VRK3-223	ENST00000601341	NFE2L1	Q14494	772 aa		11.35	□□□□□ -0.59
VRK3-223	ENST00000601341	RPS6KA2	Q15349	733 aa		11.35	□□□□□ -0.59
VRK3-223	ENST00000601341	PHKG1	Q16816	387 aa		11.35	□□□□□ -0.59
VRK3-223	ENST00000601341	AASDH	Q4L235	1098 aa	Predicted RBP	11.35	□□□□□ -0.59
VRK3-223	ENST00000601341	PYCR3	Q53H96	274 aa		11.35	□□□□□ -0.59
VRK3-223	ENST00000601341	CDKL4	Q5MAI5	379 aa		11.35	□□□□□ -0.59
VRK3-223	ENST00000601341	ENPP7	Q6UWV6	458 aa		11.35	□□□□□ -0.59
VRK3-223	ENST00000601341		Q6ZSR6	202 aa		11.35	□□□□□ -0.59
VRK3-223	ENST00000601341	RETREG3	Q86VR2	466 aa		11.35	□□□□□ -0.59
VRK3-223	ENST00000601341	CHERP	Q8IWX8	916 aa	Known RBP	11.35	□□□□□ -0.59
VRK3-223	ENST00000601341	DDIAS	Q8IXT1	998 aa		11.35	□□□□□ -0.59
VRK3-223	ENST00000601341	SLC15A3	Q8IY34	581 aa		11.35	□□□□□ -0.59
VRK3-223	ENST00000601341	PDPR	Q8NCN5	879 aa		11.35	□□□□□ -0.59
VRK3-223	ENST00000601341	OR9I1	Q8NGQ6	314 aa		11.35	□□□□□ -0.59
VRK3-223	ENST00000601341	MCOLN3	Q8TDD5	553 aa		11.35	□□□□□ -0.59
VRK3-223	ENST00000601341	TRPC4AP	Q8TEL6	797 aa		11.35	□□□□□ -0.59
VRK3-223	ENST00000601341	SNX19	Q92543	992 aa		11.35	□□□□□ -0.59
VRK3-223	ENST00000601341	SLCO4A1	Q96BD0	722 aa		11.35	□□□□□ -0.59
VRK3-223	ENST00000601341	LRRC58	Q96CX6	371 aa		11.35	□□□□□ -0.59
VRK3-223	ENST00000601341	HAUS8	Q9BT25	410 aa		11.35	□□□□□ -0.59
VRK3-223	ENST00000601341	ANKRD60	Q9BZ19	345 aa		11.35	□□□□□ -0.59
VRK3-223	ENST00000601341	SLC24A3	Q9HC58	644 aa		11.35	□□□□□ -0.59
VRK3-223	ENST00000601341	FGF22	Q9HCT0	170 aa		11.35	□□□□□ -0.59
VRK3-223	ENST00000601341	UBAP1	Q9NZ09	502 aa		11.35	□□□□□ -0.59
VRK3-223	ENST00000601341	SLC23A2	Q9UGH3	650 aa		11.35	□□□□□ -0.59
VRK3-223	ENST00000601341	INVS	Q9Y283	1065 aa		11.35	□□□□□ -0.59
VRK3-223	ENST00000601341	PRSS38	A1L453	326 aa		11.34	□□□□□ -0.59
VRK3-223	ENST00000601341	PSIP1	O75475	530 aa	Known RBP	11.34	□□□□□ -0.59
VRK3-223	ENST00000601341	CAT	P04040	527 aa	Known RBP	11.34	□□□□□ -0.59
VRK3-223	ENST00000601341	TFAP2A	P05549	437 aa		11.34	□□□□□ -0.59
VRK3-223	ENST00000601341	IL10	P22301	178 aa		11.34	□□□□□ -0.59
VRK3-223	ENST00000601341	SLC6A2	P23975	617 aa		11.34	□□□□□ -0.59
VRK3-223	ENST00000601341	PSMA4	P25789	261 aa	Known RBP	11.34	□□□□□ -0.59
VRK3-223	ENST00000601341	CD27	P26842	260 aa		11.34	□□□□□ -0.59
VRK3-223	ENST00000601341	MAP4	P27816	1152 aa	Known RBP	11.34	□□□□□ -0.59
VRK3-223	ENST00000601341	AP1S2	P56377	157 aa		11.34	□□□□□ -0.59
VRK3-223	ENST00000601341	EEFSEC	P57772	596 aa	Known RBP	11.34	□□□□□ -0.59
VRK3-223	ENST00000601341	TUBA4A	P68366	448 aa		11.34	□□□□□ -0.59
VRK3-223	ENST00000601341	CDKL1	Q00532	357 aa		11.34	□□□□□ -0.59
VRK3-223	ENST00000601341	DMPK	Q09013	629 aa		11.34	□□□□□ -0.59
VRK3-223	ENST00000601341	PCBP2	Q15366	365 aa	Known RBP eCLIP	11.34	□□□□□ -0.59
VRK3-223	ENST00000601341	METRNL	Q641Q3	311 aa		11.34	□□□□□ -0.59
VRK3-223	ENST00000601341	FAM83H	Q6ZRV2	1179 aa	Predicted RBP	11.34	□□□□□ -0.59
VRK3-223	ENST00000601341	CHST15	Q7LFX5	561 aa	Predicted RBP	11.34	□□□□□ -0.59
VRK3-223	ENST00000601341	CARM1	Q86X55	608 aa		11.34	□□□□□ -0.59
VRK3-223	ENST00000601341	EGFL8	Q99944	293 aa		11.34	□□□□□ -0.59
VRK3-223	ENST00000601341	PCDHAC1	Q9H158	963 aa		11.34	□□□□□ -0.59
VRK3-223	ENST00000601341	CARS2	Q9HA77	564 aa	Known RBP	11.34	□□□□□ -0.59
VRK3-223	ENST00000601341	TM7SF3	Q9NS93	570 aa		11.34	□□□□□ -0.59
VRK3-223	ENST00000601341	ARL15	Q9NXU5	204 aa		11.34	□□□□□ -0.59
VRK3-223	ENST00000601341	PTTG2	Q9NZH5	202 aa		11.34	□□□□□ -0.59
VRK3-223	ENST00000601341	PTBP2	Q9UKA9	531 aa	Known RBP	11.34	□□□□□ -0.59
VRK3-223	ENST00000601341	ACSL5	Q9ULC5	683 aa		11.34	□□□□□ -0.59
VRK3-223	ENST00000601341	PDE10A	Q9Y233	779 aa		11.34	□□□□□ -0.59
VRK3-223	ENST00000601341	GPSM3	Q9Y4H4	160 aa		11.34	□□□□□ -0.59
VRK3-223	ENST00000601341	PCDHA9	Q9Y5H5	950 aa		11.34	□□□□□ -0.59
VRK3-223	ENST00000601341	ST14	Q9Y5Y6	855 aa		11.34	□□□□□ -0.59

Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms