RNA–Protein interactions for RNA: ENST00000600284.5

VRK3-221, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 768 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-221ENST00000600284 NBASA2RRP1 2371 aa15.12■□□□□ 0.01
VRK3-221ENST00000600284 TNRC6AQ8NDV7 1962 aaKnown RBP15.11■□□□□ 0.01
VRK3-221ENST00000600284 HYKKA2RU49 373 aa15.11■□□□□ 0.01
VRK3-221ENST00000600284 VSTM2BA6NLU5 285 aa15.11■□□□□ 0.01
VRK3-221ENST00000600284 EIF3FO00303 357 aaPredicted RBP15.11■□□□□ 0.01
VRK3-221ENST00000600284 KIF5CO60282 957 aa15.11■□□□□ 0.01
VRK3-221ENST00000600284 VPS26AO75436 327 aa15.11■□□□□ 0.01
VRK3-221ENST00000600284 CCNDBP1O95273 360 aa15.11■□□□□ 0.01
VRK3-221ENST00000600284 RPA3P35244 121 aaPredicted RBP15.11■□□□□ 0.01
VRK3-221ENST00000600284 AIMP2Q13155 320 aaKnown RBP15.11■□□□□ 0.01
VRK3-221ENST00000600284 CTBP1Q13363 440 aa15.11■□□□□ 0.01
VRK3-221ENST00000600284 FRMPD2BQ6IN97 320 aa15.11■□□□□ 0.01
VRK3-221ENST00000600284 FBXO42Q6P3S6 717 aa15.11■□□□□ 0.01
VRK3-221ENST00000600284 COX15Q7KZN9 410 aa15.11■□□□□ 0.01
VRK3-221ENST00000600284 DENND6AQ8IWF6 608 aa15.11■□□□□ 0.01
VRK3-221ENST00000600284 SLC35F6Q8N357 371 aa15.11■□□□□ 0.01
VRK3-221ENST00000600284 GABPB2Q8TAK5 448 aaPredicted RBP15.11■□□□□ 0.01
VRK3-221ENST00000600284 ASB11Q8WXH4 323 aa15.11■□□□□ 0.01
VRK3-221ENST00000600284 TM9SF4Q92544 642 aa15.11■□□□□ 0.01
VRK3-221ENST00000600284 INPP5DQ92835 1189 aa15.11■□□□□ 0.01
VRK3-221ENST00000600284 SPSB2Q99619 263 aa15.11■□□□□ 0.01
VRK3-221ENST00000600284 PLCD4Q9BRC7 762 aa15.11■□□□□ 0.01
VRK3-221ENST00000600284 FAM167BQ9BTA0 163 aa15.11■□□□□ 0.01
VRK3-221ENST00000600284 ZNF552Q9H707 407 aaPredicted RBP15.11■□□□□ 0.01
VRK3-221ENST00000600284 MRPS30Q9NP92 439 aaKnown RBP15.11■□□□□ 0.01
VRK3-221ENST00000600284 SLAMF7Q9NQ25 335 aa15.11■□□□□ 0.01
VRK3-221ENST00000600284 FBXO6Q9NRD1 293 aaPredicted RBP15.11■□□□□ 0.01
VRK3-221ENST00000600284 C20orf96Q9NUD7 363 aaPredicted RBP15.11■□□□□ 0.01
VRK3-221ENST00000600284 ZC3H7BQ9UGR2 993 aaKnown RBP15.11■□□□□ 0.01
VRK3-221ENST00000600284 MED16Q9Y2X0 877 aa15.11■□□□□ 0.01
VRK3-221ENST00000600284 ANKRD12Q6UB98 2062 aa15.1■□□□□ 0.01
VRK3-221ENST00000600284 PCSK5Q92824 1860 aa15.1■□□□□ 0.01
VRK3-221ENST00000600284 LOC105369274A0A096LPK9 316 aa15.1■□□□□ 0.01
VRK3-221ENST00000600284 LOC102723532A0A0G2JNH3 316 aa15.1■□□□□ 0.01
VRK3-221ENST00000600284 A0A0J9YVX5 310 aa15.1■□□□□ 0.01
VRK3-221ENST00000600284 KRT87PA6NCN2 255 aa15.1■□□□□ 0.01
VRK3-221ENST00000600284 GFYI3L273 518 aa15.1■□□□□ 0.01
VRK3-221ENST00000600284 ZBTB14O43829 449 aa15.1■□□□□ 0.01
VRK3-221ENST00000600284 SLC1A2P43004 574 aa15.1■□□□□ 0.01
VRK3-221ENST00000600284 PNLIPRP1P54315 467 aa15.1■□□□□ 0.01
VRK3-221ENST00000600284 ABATP80404 500 aa15.1■□□□□ 0.01
VRK3-221ENST00000600284 PRDX1Q06830 199 aaKnown RBP15.1■□□□□ 0.01
VRK3-221ENST00000600284 INPP5JQ15735 1006 aaPredicted RBP15.1■□□□□ 0.01
VRK3-221ENST00000600284 MUM1Q2TAK8 710 aa15.1■□□□□ 0.01
VRK3-221ENST00000600284 RNASEH2BQ5TBB1 312 aaKnown RBP15.1■□□□□ 0.01
VRK3-221ENST00000600284 SLC6A19Q695T7 634 aa15.1■□□□□ 0.01
VRK3-221ENST00000600284 ZNF549Q6P9A3 640 aa15.1■□□□□ 0.01
VRK3-221ENST00000600284 CYHR1Q6ZMK1 362 aa15.1■□□□□ 0.01
VRK3-221ENST00000600284 PCGF5Q86SE9 256 aa15.1■□□□□ 0.01
VRK3-221ENST00000600284 OR4N4Q8N0Y3 316 aa15.1■□□□□ 0.01
VRK3-221ENST00000600284 AGGF1Q8N302 714 aaeCLIP15.1■□□□□ 0.01
VRK3-221ENST00000600284 SERBP1Q8NC51 408 aaKnown RBP eCLIP15.1■□□□□ 0.01
VRK3-221ENST00000600284 PKP4Q99569 1192 aa15.1■□□□□ 0.01
VRK3-221ENST00000600284 SLC30A3Q99726 388 aa15.1■□□□□ 0.01
VRK3-221ENST00000600284 ACAT2Q9BWD1 397 aa15.1■□□□□ 0.01
VRK3-221ENST00000600284 ZNF304Q9HCX3 659 aa15.1■□□□□ 0.01
VRK3-221ENST00000600284 SLC6A20Q9NP91 592 aa15.1■□□□□ 0.01
VRK3-221ENST00000600284 SEMA3GQ9NS98 782 aa15.1■□□□□ 0.01
VRK3-221ENST00000600284 TSR3Q9UJK0 312 aaKnown RBP15.1■□□□□ 0.01
VRK3-221ENST00000600284 CDC23Q9UJX2 597 aa15.1■□□□□ 0.01
VRK3-221ENST00000600284 FBXO5Q9UKT4 447 aa15.1■□□□□ 0.01
VRK3-221ENST00000600284 SNX12Q9UMY4 172 aa15.1■□□□□ 0.01
VRK3-221ENST00000600284 RELNP78509 3460 aa15.1■□□□□ 0.01
VRK3-221ENST00000600284 E7ENX8 843 aa15.09■□□□□ 0.01
VRK3-221ENST00000600284 SOCS6O14544 535 aa15.09■□□□□ 0.01
VRK3-221ENST00000600284 TTC4O95801 387 aa15.09■□□□□ 0.01
VRK3-221ENST00000600284 SLC16A8O95907 504 aa15.09■□□□□ 0.01
VRK3-221ENST00000600284 ATXN8OSP0DMR3 200 aa15.09■□□□□ 0.01
VRK3-221ENST00000600284 ERVK-10P10266 1014 aa15.09■□□□□ 0.01
VRK3-221ENST00000600284 SKIV2L2P42285 1042 aaKnown RBP15.09■□□□□ 0.01
VRK3-221ENST00000600284 CARSP49589 748 aaKnown RBP15.09■□□□□ 0.01
VRK3-221ENST00000600284 TAP2Q03519 686 aa15.09■□□□□ 0.01
VRK3-221ENST00000600284 OCA2Q04671 838 aa15.09■□□□□ 0.01
VRK3-221ENST00000600284 RAPSNQ13702 412 aa15.09■□□□□ 0.01
VRK3-221ENST00000600284 PTK6Q13882 451 aa15.09■□□□□ 0.01
VRK3-221ENST00000600284 PPP1R7Q15435 360 aa15.09■□□□□ 0.01
VRK3-221ENST00000600284 PRTGQ2VWP7 1150 aa15.09■□□□□ 0.01
VRK3-221ENST00000600284 ICE2Q659A1 982 aa15.09■□□□□ 0.01
VRK3-221ENST00000600284 LRRC8EQ6NSJ5 796 aa15.09■□□□□ 0.01
VRK3-221ENST00000600284 UGT3A1Q6NUS8 523 aa15.09■□□□□ 0.01
VRK3-221ENST00000600284 SUSD1Q6UWL2 747 aa15.09■□□□□ 0.01
VRK3-221ENST00000600284 PAQR7Q86WK9 346 aa15.09■□□□□ 0.01
VRK3-221ENST00000600284 Q8NA96 180 aa15.09■□□□□ 0.01
VRK3-221ENST00000600284 GIMAP7Q8NHV1 300 aa15.09■□□□□ 0.01
VRK3-221ENST00000600284 ZNF480Q8WV37 535 aa15.09■□□□□ 0.01
VRK3-221ENST00000600284 ZDHHC19Q8WVZ1 309 aaPredicted RBP15.09■□□□□ 0.01
VRK3-221ENST00000600284 SLCO2A1Q92959 643 aa15.09■□□□□ 0.01
VRK3-221ENST00000600284 MVB12AQ96EY5 273 aa15.09■□□□□ 0.01
VRK3-221ENST00000600284 NAT9Q9BTE0 207 aa15.09■□□□□ 0.01
VRK3-221ENST00000600284 MFRPQ9BY79 579 aa15.09■□□□□ 0.01
VRK3-221ENST00000600284 ZNF282Q9UDV7 671 aaPredicted RBP15.09■□□□□ 0.01
VRK3-221ENST00000600284 CDC14AQ9UNH5 594 aa15.09■□□□□ 0.01
VRK3-221ENST00000600284 CCDC88CQ9P219 2028 aa15.09■□□□□ 0.01
VRK3-221ENST00000600284 FLNCQ14315 2725 aa15.08■□□□□ 0
VRK3-221ENST00000600284 IGLV3-12A0A075B6K2 115 aa15.08■□□□□ 0
VRK3-221ENST00000600284 H0YGG7 62 aa15.08■□□□□ 0
VRK3-221ENST00000600284 TXNDC9O14530 226 aa15.08■□□□□ 0
VRK3-221ENST00000600284 PRPF4O43172 522 aaKnown RBP eCLIP15.08■□□□□ 0
VRK3-221ENST00000600284 HAUS5O94927 633 aa15.08■□□□□ 0
VRK3-221ENST00000600284 EIF2S1P05198 315 aaKnown RBP15.08■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms