RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-208ENST00000600012 SUPT3HB4E1H0 165 aa12.28□□□□□ -0.44
UPF1-208ENST00000600012 UBXN8O00124 270 aa12.28□□□□□ -0.44
UPF1-208ENST00000600012 KPNA5O15131 536 aa12.28□□□□□ -0.44
UPF1-208ENST00000600012 GRID2O43424 1007 aa12.28□□□□□ -0.44
UPF1-208ENST00000600012 SUPT3HO75486 399 aa12.28□□□□□ -0.44
UPF1-208ENST00000600012 GPC4O75487 556 aa12.28□□□□□ -0.44
UPF1-208ENST00000600012 EML2O95834 649 aa12.28□□□□□ -0.44
UPF1-208ENST00000600012 RBP1P09455 135 aa12.28□□□□□ -0.44
UPF1-208ENST00000600012 CBSLP0DN79 551 aa12.28□□□□□ -0.44
UPF1-208ENST00000600012 LSP1P33241 339 aa12.28□□□□□ -0.44
UPF1-208ENST00000600012 CBSP35520 551 aa12.28□□□□□ -0.44
UPF1-208ENST00000600012 KCNC1P48547 511 aa12.28□□□□□ -0.44
UPF1-208ENST00000600012 ABHD18Q0P651 414 aa12.28□□□□□ -0.44
UPF1-208ENST00000600012 NFE2L1Q14494 772 aa12.28□□□□□ -0.44
UPF1-208ENST00000600012 CHI3L2Q15782 390 aa12.28□□□□□ -0.44
UPF1-208ENST00000600012 PDK4Q16654 411 aa12.28□□□□□ -0.44
UPF1-208ENST00000600012 ZNF658BQ4V348 819 aaPredicted RBP12.28□□□□□ -0.44
UPF1-208ENST00000600012 COLEC12Q5KU26 742 aa12.28□□□□□ -0.44
UPF1-208ENST00000600012 CYHR1Q6ZMK1 362 aa12.28□□□□□ -0.44
UPF1-208ENST00000600012 FAM83HQ6ZRV2 1179 aaPredicted RBP12.28□□□□□ -0.44
UPF1-208ENST00000600012 ZCCHC23Q6ZST2 131 aa12.28□□□□□ -0.44
UPF1-208ENST00000600012 CHST15Q7LFX5 561 aaPredicted RBP12.28□□□□□ -0.44
UPF1-208ENST00000600012 SLC9B2Q86UD5 537 aa12.28□□□□□ -0.44
UPF1-208ENST00000600012 NUDCD3Q8IVD9 361 aa12.28□□□□□ -0.44
UPF1-208ENST00000600012 C10orf107Q8IVU9 208 aa12.28□□□□□ -0.44
UPF1-208ENST00000600012 AVL9Q8NBF6 648 aa12.28□□□□□ -0.44
UPF1-208ENST00000600012 RDH11Q8TC12 318 aa12.28□□□□□ -0.44
UPF1-208ENST00000600012 HM13Q8TCT9 377 aa12.28□□□□□ -0.44
UPF1-208ENST00000600012 ASZ1Q8WWH4 475 aa12.28□□□□□ -0.44
UPF1-208ENST00000600012 NCSTNQ92542 709 aa12.28□□□□□ -0.44
UPF1-208ENST00000600012 PDLIM5Q96HC4 596 aaKnown RBP12.28□□□□□ -0.44
UPF1-208ENST00000600012 LINC00615Q96LM1 132 aaPredicted RBP12.28□□□□□ -0.44
UPF1-208ENST00000600012 ATOH8Q96SQ7 321 aa12.28□□□□□ -0.44
UPF1-208ENST00000600012 LDHAL6BQ9BYZ2 381 aaPredicted RBP12.28□□□□□ -0.44
UPF1-208ENST00000600012 SPRY4Q9C004 299 aa12.28□□□□□ -0.44
UPF1-208ENST00000600012 TRIT1Q9H3H1 467 aaKnown RBP12.28□□□□□ -0.44
UPF1-208ENST00000600012 EPB41L1Q9H4G0 881 aa12.28□□□□□ -0.44
UPF1-208ENST00000600012 CCDC134Q9H6E4 229 aa12.28□□□□□ -0.44
UPF1-208ENST00000600012 RMI1Q9H9A7 625 aa12.28□□□□□ -0.44
UPF1-208ENST00000600012 COG4Q9H9E3 785 aa12.28□□□□□ -0.44
UPF1-208ENST00000600012 FBXO8Q9NRD0 319 aa12.28□□□□□ -0.44
UPF1-208ENST00000600012 SLC23A2Q9UGH3 650 aa12.28□□□□□ -0.44
UPF1-208ENST00000600012 ADAMTS6Q9UKP5 1117 aa12.28□□□□□ -0.44
UPF1-208ENST00000600012 RNF112Q9ULX5 631 aa12.28□□□□□ -0.44
UPF1-208ENST00000600012 TMEM184BQ9Y519 407 aaPredicted RBP12.28□□□□□ -0.44
UPF1-208ENST00000600012 KIR2DS5A0A0G2JLQ3 304 aa12.27□□□□□ -0.45
UPF1-208ENST00000600012 A0A0G2JNG1 304 aa12.27□□□□□ -0.45
UPF1-208ENST00000600012 A6NCN8 305 aa12.27□□□□□ -0.45
UPF1-208ENST00000600012 A8MT66 165 aa12.27□□□□□ -0.45
UPF1-208ENST00000600012 TCP11X1B4DZS4 312 aa12.27□□□□□ -0.45
UPF1-208ENST00000600012 KIR2DS3K7RE56 304 aa12.27□□□□□ -0.45
UPF1-208ENST00000600012 EIF3FO00303 357 aaPredicted RBP12.27□□□□□ -0.45
UPF1-208ENST00000600012 BIRC5O15392 142 aa12.27□□□□□ -0.45
UPF1-208ENST00000600012 DLX3O60479 287 aa12.27□□□□□ -0.45
UPF1-208ENST00000600012 SHOX2O60902 331 aaPredicted RBP12.27□□□□□ -0.45
UPF1-208ENST00000600012 KERAO60938 352 aa12.27□□□□□ -0.45
UPF1-208ENST00000600012 STK17BO94768 372 aa12.27□□□□□ -0.45
UPF1-208ENST00000600012 MPC1LP0DKB6 136 aa12.27□□□□□ -0.45
UPF1-208ENST00000600012 ACP5P13686 325 aa12.27□□□□□ -0.45
UPF1-208ENST00000600012 F3P13726 295 aa12.27□□□□□ -0.45
UPF1-208ENST00000600012 ENO3P13929 434 aaPredicted RBP12.27□□□□□ -0.45
UPF1-208ENST00000600012 TAC1P20366 129 aa12.27□□□□□ -0.45
UPF1-208ENST00000600012 PDHA2P29803 388 aa12.27□□□□□ -0.45
UPF1-208ENST00000600012 CASRP41180 1078 aa12.27□□□□□ -0.45
UPF1-208ENST00000600012 MC1RQ01726 317 aa12.27□□□□□ -0.45
UPF1-208ENST00000600012 CDC20Q12834 499 aa12.27□□□□□ -0.45
UPF1-208ENST00000600012 KIR2DS5Q14953 304 aa12.27□□□□□ -0.45
UPF1-208ENST00000600012 CES4AQ5XG92 561 aa12.27□□□□□ -0.45
UPF1-208ENST00000600012 IYDQ6PHW0 289 aa12.27□□□□□ -0.45
UPF1-208ENST00000600012 SBSNQ6UWP8 590 aa12.27□□□□□ -0.45
UPF1-208ENST00000600012 CFAP206Q8IYR0 622 aa12.27□□□□□ -0.45
UPF1-208ENST00000600012 OR2L2Q8NH16 312 aa12.27□□□□□ -0.45
UPF1-208ENST00000600012 PPP1R14CQ8TAE6 165 aa12.27□□□□□ -0.45
UPF1-208ENST00000600012 RHEBL1Q8TAI7 183 aa12.27□□□□□ -0.45
UPF1-208ENST00000600012 C9orf43Q8TAL5 461 aaPredicted RBP12.27□□□□□ -0.45
UPF1-208ENST00000600012 STAG3L4Q8TBR4 150 aa12.27□□□□□ -0.45
UPF1-208ENST00000600012 LRRC8CQ8TDW0 803 aa12.27□□□□□ -0.45
UPF1-208ENST00000600012 SKA2Q8WVK7 121 aaPredicted RBP12.27□□□□□ -0.45
UPF1-208ENST00000600012 ZNF75CPQ92670 426 aaPredicted RBP12.27□□□□□ -0.45
UPF1-208ENST00000600012 CTRCQ99895 268 aa12.27□□□□□ -0.45
UPF1-208ENST00000600012 EPN3Q9H201 632 aa12.27□□□□□ -0.45
UPF1-208ENST00000600012 RABEP2Q9H5N1 569 aa12.27□□□□□ -0.45
UPF1-208ENST00000600012 ACSS2Q9NR19 701 aa12.27□□□□□ -0.45
UPF1-208ENST00000600012 UTP6Q9NYH9 597 aaKnown RBP12.27□□□□□ -0.45
UPF1-208ENST00000600012 TBC1D29Q9UFV1 150 aa12.27□□□□□ -0.45
UPF1-208ENST00000600012 KCNK6Q9Y257 313 aa12.27□□□□□ -0.45
UPF1-208ENST00000600012 DNAJC16Q9Y2G8 782 aa12.27□□□□□ -0.45
UPF1-208ENST00000600012 LRRK2Q5S007 2527 aa12.26□□□□□ -0.45
UPF1-208ENST00000600012 LOC101059948A0A1B0GTJ6 334 aa12.26□□□□□ -0.45
UPF1-208ENST00000600012 MGAT4DA6NG13 374 aa12.26□□□□□ -0.45
UPF1-208ENST00000600012 NCF1BA6NI72 391 aaPredicted RBP12.26□□□□□ -0.45
UPF1-208ENST00000600012 LILRA5A6NI73 299 aa12.26□□□□□ -0.45
UPF1-208ENST00000600012 OR5K4A6NMS3 321 aa12.26□□□□□ -0.45
UPF1-208ENST00000600012 NCF1CA8MVU1 366 aaPredicted RBP12.26□□□□□ -0.45
UPF1-208ENST00000600012 GPR89AB7ZAQ6 455 aa12.26□□□□□ -0.45
UPF1-208ENST00000600012 LIN7AO14910 233 aaPredicted RBP12.26□□□□□ -0.45
UPF1-208ENST00000600012 KMOO15229 486 aa12.26□□□□□ -0.45
UPF1-208ENST00000600012 NKX2-8O15522 239 aa12.26□□□□□ -0.45
UPF1-208ENST00000600012 SMIM24O75264 130 aa12.26□□□□□ -0.45
UPF1-208ENST00000600012 SLCO2B1O94956 709 aa12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms