RNA–Protein interactions for RNA: ENST00000599322.5

LIG1-218, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 620 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-218ENST00000599322 TXNDC9O14530 226 aa13.57□□□□□ -0.24
LIG1-218ENST00000599322 TUBB4AP04350 444 aa13.57□□□□□ -0.24
LIG1-218ENST00000599322 EIF2S1P05198 315 aaKnown RBP13.57□□□□□ -0.24
LIG1-218ENST00000599322 ATXN8OSP0DMR3 200 aa13.57□□□□□ -0.24
LIG1-218ENST00000599322 ITGAXP20702 1163 aa13.57□□□□□ -0.24
LIG1-218ENST00000599322 HRH2P25021 359 aa13.57□□□□□ -0.24
LIG1-218ENST00000599322 FOLR3P41439 243 aa13.57□□□□□ -0.24
LIG1-218ENST00000599322 RPL21P46778 160 aaKnown RBP13.57□□□□□ -0.24
LIG1-218ENST00000599322 C2orf54Q08AI8 447 aa13.57□□□□□ -0.24
LIG1-218ENST00000599322 SP140Q13342 867 aa13.57□□□□□ -0.24
LIG1-218ENST00000599322 NKAIN1Q4KMZ8 207 aa13.57□□□□□ -0.24
LIG1-218ENST00000599322 ATP1A1-AS1Q5TC04 95 aa13.57□□□□□ -0.24
LIG1-218ENST00000599322 SUSD1Q6UWL2 747 aa13.57□□□□□ -0.24
LIG1-218ENST00000599322 ZNF517Q6ZMY9 492 aaPredicted RBP13.57□□□□□ -0.24
LIG1-218ENST00000599322 TTLL10Q6ZVT0 673 aa13.57□□□□□ -0.24
LIG1-218ENST00000599322 SLC26A11Q86WA9 606 aa13.57□□□□□ -0.24
LIG1-218ENST00000599322 OR2A1Q8NGT9 310 aa13.57□□□□□ -0.24
LIG1-218ENST00000599322 EEF1AKMT1Q8WVE0 214 aa13.57□□□□□ -0.24
LIG1-218ENST00000599322 SLC30A3Q99726 388 aa13.57□□□□□ -0.24
LIG1-218ENST00000599322 ZFYVE21Q9BQ24 234 aa13.57□□□□□ -0.24
LIG1-218ENST00000599322 DPH7Q9BTV6 452 aa13.57□□□□□ -0.24
LIG1-218ENST00000599322 AKIRIN1Q9H9L7 192 aaPredicted RBP13.57□□□□□ -0.24
LIG1-218ENST00000599322 PARVBQ9HBI1 364 aa13.57□□□□□ -0.24
LIG1-218ENST00000599322 CCDC177Q9NQR7 707 aaPredicted RBP13.57□□□□□ -0.24
LIG1-218ENST00000599322 TAC3Q9UHF0 121 aa13.57□□□□□ -0.24
LIG1-218ENST00000599322 KCNMB2Q9Y691 235 aa13.57□□□□□ -0.24
LIG1-218ENST00000599322 A0A0J9YVX5 310 aa13.56□□□□□ -0.24
LIG1-218ENST00000599322 A0A1B0GX78 115 aa13.56□□□□□ -0.24
LIG1-218ENST00000599322 CYSRT1A8MQ03 144 aa13.56□□□□□ -0.24
LIG1-218ENST00000599322 PRPF4O43172 522 aaKnown RBP eCLIP13.56□□□□□ -0.24
LIG1-218ENST00000599322 SLC28A2O43868 658 aa13.56□□□□□ -0.24
LIG1-218ENST00000599322 PRICKLE3O43900 615 aaPredicted RBP13.56□□□□□ -0.24
LIG1-218ENST00000599322 KLHL41O60662 606 aa13.56□□□□□ -0.24
LIG1-218ENST00000599322 URI1O94763 535 aaPredicted RBP13.56□□□□□ -0.24
LIG1-218ENST00000599322 SLC16A8O95907 504 aa13.56□□□□□ -0.24
LIG1-218ENST00000599322 SAT1P21673 171 aa13.56□□□□□ -0.24
LIG1-218ENST00000599322 CCND1P24385 295 aa13.56□□□□□ -0.24
LIG1-218ENST00000599322 GABRA4P48169 554 aa13.56□□□□□ -0.24
LIG1-218ENST00000599322 VSX2P58304 361 aaPredicted RBP13.56□□□□□ -0.24
LIG1-218ENST00000599322 RPS18P62269 152 aaKnown RBP13.56□□□□□ -0.24
LIG1-218ENST00000599322 PRDX1Q06830 199 aaKnown RBP13.56□□□□□ -0.24
LIG1-218ENST00000599322 FASTKQ14296 549 aaKnown RBP13.56□□□□□ -0.24
LIG1-218ENST00000599322 EEF1AKMT2Q5JPI9 291 aaKnown RBP13.56□□□□□ -0.24
LIG1-218ENST00000599322 WASHC2DQ5SRD0 308 aa13.56□□□□□ -0.24
LIG1-218ENST00000599322 HECTD2Q5U5R9 776 aa13.56□□□□□ -0.24
LIG1-218ENST00000599322 ICE2Q659A1 982 aa13.56□□□□□ -0.24
LIG1-218ENST00000599322 STEAP4Q687X5 459 aa13.56□□□□□ -0.24
LIG1-218ENST00000599322 FCRL6Q6DN72 434 aa13.56□□□□□ -0.24
LIG1-218ENST00000599322 PAQR3Q6TCH7 311 aa13.56□□□□□ -0.24
LIG1-218ENST00000599322 PRICKLE2Q7Z3G6 844 aa13.56□□□□□ -0.24
LIG1-218ENST00000599322 PIWIL4Q7Z3Z4 852 aaKnown RBP13.56□□□□□ -0.24
LIG1-218ENST00000599322 STRA8Q7Z7C7 330 aa13.56□□□□□ -0.24
LIG1-218ENST00000599322 IGDCC3Q8IVU1 814 aa13.56□□□□□ -0.24
LIG1-218ENST00000599322 C17orf53Q8N3J3 647 aaPredicted RBP13.56□□□□□ -0.24
LIG1-218ENST00000599322 GIMAP7Q8NHV1 300 aa13.56□□□□□ -0.24
LIG1-218ENST00000599322 ATL1Q8WXF7 558 aa13.56□□□□□ -0.24
LIG1-218ENST00000599322 ZNF592Q92610 1267 aa13.56□□□□□ -0.24
LIG1-218ENST00000599322 COL26A1Q96A83 441 aa13.56□□□□□ -0.24
LIG1-218ENST00000599322 TRIM44Q96DX7 344 aaPredicted RBP13.56□□□□□ -0.24
LIG1-218ENST00000599322 LINGO1Q96FE5 620 aa13.56□□□□□ -0.24
LIG1-218ENST00000599322 PWWP2AQ96N64 755 aa13.56□□□□□ -0.24
LIG1-218ENST00000599322 SAYSD1Q9NPB0 183 aa13.56□□□□□ -0.24
LIG1-218ENST00000599322 STARD5Q9NSY2 213 aa13.56□□□□□ -0.24
LIG1-218ENST00000599322 CUTCQ9NTM9 273 aa13.56□□□□□ -0.24
LIG1-218ENST00000599322 DHCR7Q9UBM7 475 aaKnown RBP13.56□□□□□ -0.24
LIG1-218ENST00000599322 CDC14AQ9UNH5 594 aa13.56□□□□□ -0.24
LIG1-218ENST00000599322 PTRH2Q9Y3E5 179 aaKnown RBP13.56□□□□□ -0.24
LIG1-218ENST00000599322 KLK4Q9Y5K2 254 aa13.56□□□□□ -0.24
LIG1-218ENST00000599322 HYKKA2RU49 373 aa13.55□□□□□ -0.24
LIG1-218ENST00000599322 KIF2AO00139 706 aaPredicted RBP13.55□□□□□ -0.24
LIG1-218ENST00000599322 DSCR3O14972 297 aa13.55□□□□□ -0.24
LIG1-218ENST00000599322 RAD51CO43502 376 aa13.55□□□□□ -0.24
LIG1-218ENST00000599322 F7P08709 466 aaPredicted RBP13.55□□□□□ -0.24
LIG1-218ENST00000599322 GSTA2P09210 222 aa13.55□□□□□ -0.24
LIG1-218ENST00000599322 ERGP11308 486 aa13.55□□□□□ -0.24
LIG1-218ENST00000599322 PSMB5P28074 263 aa13.55□□□□□ -0.24
LIG1-218ENST00000599322 OTX2P32243 289 aa13.55□□□□□ -0.24
LIG1-218ENST00000599322 GRK3P35626 688 aa13.55□□□□□ -0.24
LIG1-218ENST00000599322 PMS2P54278 862 aa13.55□□□□□ -0.24
LIG1-218ENST00000599322 PLTPP55058 493 aa13.55□□□□□ -0.24
LIG1-218ENST00000599322 SSPNQ14714 243 aa13.55□□□□□ -0.24
LIG1-218ENST00000599322 MUM1Q2TAK8 710 aa13.55□□□□□ -0.24
LIG1-218ENST00000599322 LACTB2Q53H82 288 aaPredicted RBP13.55□□□□□ -0.24
LIG1-218ENST00000599322 CYHR1Q6ZMK1 362 aa13.55□□□□□ -0.24
LIG1-218ENST00000599322 ATG14Q6ZNE5 492 aa13.55□□□□□ -0.24
LIG1-218ENST00000599322 CEP128Q6ZU80 1094 aa13.55□□□□□ -0.24
LIG1-218ENST00000599322 APLFQ8IW19 511 aaPredicted RBP13.55□□□□□ -0.24
LIG1-218ENST00000599322 NKAPQ8N5F7 415 aaKnown RBP13.55□□□□□ -0.24
LIG1-218ENST00000599322 TBC1D19Q8N5T2 526 aa13.55□□□□□ -0.24
LIG1-218ENST00000599322 MNS1Q8NEH6 495 aa13.55□□□□□ -0.24
LIG1-218ENST00000599322 ZNF480Q8WV37 535 aa13.55□□□□□ -0.24
LIG1-218ENST00000599322 ALKBH8Q96BT7 664 aaKnown RBP13.55□□□□□ -0.24
LIG1-218ENST00000599322 PTERQ96BW5 349 aa13.55□□□□□ -0.24
LIG1-218ENST00000599322 TSPAN17Q96FV3 270 aa13.55□□□□□ -0.24
LIG1-218ENST00000599322 CABS1Q96KC9 395 aa13.55□□□□□ -0.24
LIG1-218ENST00000599322 FER1L6-AS2Q96M78 137 aa13.55□□□□□ -0.24
LIG1-218ENST00000599322 C16orf45Q96MC5 204 aaPredicted RBP13.55□□□□□ -0.24
LIG1-218ENST00000599322 GBP5Q96PP8 586 aa13.55□□□□□ -0.24
LIG1-218ENST00000599322 ARL15Q9NXU5 204 aa13.55□□□□□ -0.24
LIG1-218ENST00000599322 CDC23Q9UJX2 597 aa13.55□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms