RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 MGRN1O60291 552 aa7.72□□□□□ -1.17
VPS39-213ENST00000570062 NRP2O60462 931 aa7.72□□□□□ -1.17
VPS39-213ENST00000570062 DNAJA2O60884 412 aa7.72□□□□□ -1.17
VPS39-213ENST00000570062 PEX11AO75192 247 aa7.72□□□□□ -1.17
VPS39-213ENST00000570062 RASSF9O75901 435 aa7.72□□□□□ -1.17
VPS39-213ENST00000570062 KRT34O76011 436 aa7.72□□□□□ -1.17
VPS39-213ENST00000570062 RASGRP1O95267 797 aa7.72□□□□□ -1.17
VPS39-213ENST00000570062 IL6P05231 212 aa7.72□□□□□ -1.17
VPS39-213ENST00000570062 C1GALT1C1LP0DN25 315 aa7.72□□□□□ -1.17
VPS39-213ENST00000570062 ERGP11308 486 aa7.72□□□□□ -1.17
VPS39-213ENST00000570062 IMPA1P29218 277 aa7.72□□□□□ -1.17
VPS39-213ENST00000570062 PDHA2P29803 388 aa7.72□□□□□ -1.17
VPS39-213ENST00000570062 IGFALSP35858 605 aa7.72□□□□□ -1.17
VPS39-213ENST00000570062 RPL3P39023 403 aaKnown RBP7.72□□□□□ -1.17
VPS39-213ENST00000570062 PIK3CBP42338 1070 aa7.72□□□□□ -1.17
VPS39-213ENST00000570062 GDF5P43026 501 aa7.72□□□□□ -1.17
VPS39-213ENST00000570062 GSTM5P46439 218 aa7.72□□□□□ -1.17
VPS39-213ENST00000570062 ILF3Q12906 894 aaKnown RBP eCLIP7.72□□□□□ -1.17
VPS39-213ENST00000570062 CHIT1Q13231 466 aa7.72□□□□□ -1.17
VPS39-213ENST00000570062 PRKG2Q13237 762 aa7.72□□□□□ -1.17
VPS39-213ENST00000570062 MAP7Q14244 749 aa7.72□□□□□ -1.17
VPS39-213ENST00000570062 NFE2L1Q14494 772 aa7.72□□□□□ -1.17
VPS39-213ENST00000570062 UBXN2BQ14CS0 331 aa7.72□□□□□ -1.17
VPS39-213ENST00000570062 DPY19L1Q2PZI1 675 aa7.72□□□□□ -1.17
VPS39-213ENST00000570062 AP5B1Q2VPB7 878 aa7.72□□□□□ -1.17
VPS39-213ENST00000570062 TRMT5Q32P41 509 aaKnown RBP7.72□□□□□ -1.17
VPS39-213ENST00000570062 AGKQ53H12 422 aa7.72□□□□□ -1.17
VPS39-213ENST00000570062 XKR6Q5GH73 641 aa7.72□□□□□ -1.17
VPS39-213ENST00000570062 EEF1AKMT2Q5JPI9 291 aaKnown RBP7.72□□□□□ -1.17
VPS39-213ENST00000570062 MED27Q6P2C8 311 aa7.72□□□□□ -1.17
VPS39-213ENST00000570062 CYB5D1Q6P9G0 228 aa7.72□□□□□ -1.17
VPS39-213ENST00000570062 ENPP7Q6UWV6 458 aa7.72□□□□□ -1.17
VPS39-213ENST00000570062 CHST15Q7LFX5 561 aaPredicted RBP7.72□□□□□ -1.17
VPS39-213ENST00000570062 NET1Q7Z628 596 aaPredicted RBP7.72□□□□□ -1.17
VPS39-213ENST00000570062 ARPINQ7Z6K5 226 aa7.72□□□□□ -1.17
VPS39-213ENST00000570062 ABI3BPQ7Z7G0 1075 aa7.72□□□□□ -1.17
VPS39-213ENST00000570062 TRIM74Q86UV6 250 aa7.72□□□□□ -1.17
VPS39-213ENST00000570062 ZFAND4Q86XD8 727 aa7.72□□□□□ -1.17
VPS39-213ENST00000570062 MYLK4Q86YV6 388 aaPredicted RBP7.72□□□□□ -1.17
VPS39-213ENST00000570062 TREML1Q86YW5 311 aa7.72□□□□□ -1.17
VPS39-213ENST00000570062 SCUBE1Q8IWY4 988 aa7.72□□□□□ -1.17
VPS39-213ENST00000570062 PGAM4Q8N0Y7 254 aa7.72□□□□□ -1.17
VPS39-213ENST00000570062 NATD1Q8N6N6 113 aa7.72□□□□□ -1.17
VPS39-213ENST00000570062 RBM15BQ8NDT2 890 aaKnown RBP7.72□□□□□ -1.17
VPS39-213ENST00000570062 ZNF480Q8WV37 535 aa7.72□□□□□ -1.17
VPS39-213ENST00000570062 HMGB4Q8WW32 186 aa7.72□□□□□ -1.17
VPS39-213ENST00000570062 SLC5A11Q8WWX8 675 aa7.72□□□□□ -1.17
VPS39-213ENST00000570062 JADE3Q92613 823 aa7.72□□□□□ -1.17
VPS39-213ENST00000570062 STMN2Q93045 179 aa7.72□□□□□ -1.17
VPS39-213ENST00000570062 ESAMQ96AP7 390 aa7.72□□□□□ -1.17
VPS39-213ENST00000570062 CLDN23Q96B33 292 aa7.72□□□□□ -1.17
VPS39-213ENST00000570062 SH3KBP1Q96B97 665 aa7.72□□□□□ -1.17
VPS39-213ENST00000570062 MOCOSQ96EN8 888 aa7.72□□□□□ -1.17
VPS39-213ENST00000570062 MED8Q96G25 268 aa7.72□□□□□ -1.17
VPS39-213ENST00000570062 TOE1Q96GM8 510 aaKnown RBP7.72□□□□□ -1.17
VPS39-213ENST00000570062 SPACA7Q96KW9 195 aa7.72□□□□□ -1.17
VPS39-213ENST00000570062 FERD3LQ96RJ6 166 aa7.72□□□□□ -1.17
VPS39-213ENST00000570062 PRPF18Q99633 342 aaKnown RBP7.72□□□□□ -1.17
VPS39-213ENST00000570062 SH3GL1Q99961 368 aa7.72□□□□□ -1.17
VPS39-213ENST00000570062 CENPKQ9BS16 269 aa7.72□□□□□ -1.17
VPS39-213ENST00000570062 LGR4Q9BXB1 951 aa7.72□□□□□ -1.17
VPS39-213ENST00000570062 TUBB1Q9H4B7 451 aa7.72□□□□□ -1.17
VPS39-213ENST00000570062 CARS2Q9HA77 564 aaKnown RBP7.72□□□□□ -1.17
VPS39-213ENST00000570062 PELI2Q9HAT8 420 aa7.72□□□□□ -1.17
VPS39-213ENST00000570062 LRTM1Q9HBL6 345 aa7.72□□□□□ -1.17
VPS39-213ENST00000570062 SLC40A1Q9NP59 571 aa7.72□□□□□ -1.17
VPS39-213ENST00000570062 WSB2Q9NYS7 404 aaPredicted RBP7.72□□□□□ -1.17
VPS39-213ENST00000570062 VPS29Q9UBQ0 182 aa7.72□□□□□ -1.17
VPS39-213ENST00000570062 KLQ9UEF7 1012 aa7.72□□□□□ -1.17
VPS39-213ENST00000570062 MBD1Q9UIS9 605 aaPredicted RBP7.72□□□□□ -1.17
VPS39-213ENST00000570062 ZNF225Q9UK10 706 aa7.72□□□□□ -1.17
VPS39-213ENST00000570062 SUFUQ9UMX1 484 aa7.72□□□□□ -1.17
VPS39-213ENST00000570062 RUVBL1Q9Y265 456 aaKnown RBP7.72□□□□□ -1.17
VPS39-213ENST00000570062 TIMM22Q9Y584 194 aa7.72□□□□□ -1.17
VPS39-213ENST00000570062 OR1A2Q9Y585 309 aa7.72□□□□□ -1.17
VPS39-213ENST00000570062 GPR45Q9Y5Y3 372 aa7.72□□□□□ -1.17
VPS39-213ENST00000570062 NCOR1O75376 2440 aa7.72□□□□□ -1.17
VPS39-213ENST00000570062 ANKRD36A6QL64 1941 aa7.72□□□□□ -1.17
VPS39-213ENST00000570062 MYLKQ15746 1914 aa7.72□□□□□ -1.17
VPS39-213ENST00000570062 ATG2AQ2TAZ0 1938 aa7.72□□□□□ -1.17
VPS39-213ENST00000570062 DOCK8Q8NF50 2099 aa7.71□□□□□ -1.17
VPS39-213ENST00000570062 MYOFQ9NZM1 2061 aa7.71□□□□□ -1.17
VPS39-213ENST00000570062 ATP6AP2A0A1C7CYW4 349 aa7.71□□□□□ -1.18
VPS39-213ENST00000570062 A0A1W2PP18 115 aa7.71□□□□□ -1.18
VPS39-213ENST00000570062 A0A1W2PPC4 97 aa7.71□□□□□ -1.18
VPS39-213ENST00000570062 FAM221BA6H8Z2 402 aa7.71□□□□□ -1.18
VPS39-213ENST00000570062 PRR23AA6NEV1 266 aa7.71□□□□□ -1.18
VPS39-213ENST00000570062 TMEM202A6NGA9 273 aa7.71□□□□□ -1.18
VPS39-213ENST00000570062 PDZK1P1A8MUH7 402 aa7.71□□□□□ -1.18
VPS39-213ENST00000570062 E7ENX8 843 aa7.71□□□□□ -1.18
VPS39-213ENST00000570062 PPP6CO00743 305 aa7.71□□□□□ -1.18
VPS39-213ENST00000570062 LSM1O15116 133 aaKnown RBP7.71□□□□□ -1.18
VPS39-213ENST00000570062 CFLARO15519 480 aa7.71□□□□□ -1.18
VPS39-213ENST00000570062 SEC22BO75396 215 aa7.71□□□□□ -1.18
VPS39-213ENST00000570062 ATP6AP2O75787 350 aa7.71□□□□□ -1.18
VPS39-213ENST00000570062 ACP5P13686 325 aa7.71□□□□□ -1.18
VPS39-213ENST00000570062 NPPBP16860 134 aa7.71□□□□□ -1.18
VPS39-213ENST00000570062 GPX3P22352 226 aa7.71□□□□□ -1.18
VPS39-213ENST00000570062 JAK1P23458 1154 aa7.71□□□□□ -1.18
VPS39-213ENST00000570062 PTX3P26022 381 aaPredicted RBP7.71□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms