RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 KRT6AP02538 564 aa12.84□□□□□ -0.35
CLN3-210ENST00000563874 KRT6BP04259 564 aa12.84□□□□□ -0.35
CLN3-210ENST00000563874 ALOX5P09917 674 aa12.84□□□□□ -0.35
CLN3-210ENST00000563874 RPL17P18621 184 aaKnown RBP12.84□□□□□ -0.35
CLN3-210ENST00000563874 AQP1P29972 269 aa12.84□□□□□ -0.35
CLN3-210ENST00000563874 KRT6CP48668 564 aa12.84□□□□□ -0.35
CLN3-210ENST00000563874 CLDN8P56748 225 aa12.84□□□□□ -0.35
CLN3-210ENST00000563874 MVKQ03426 396 aa12.84□□□□□ -0.35
CLN3-210ENST00000563874 GPR153Q6NV75 609 aa12.84□□□□□ -0.35
CLN3-210ENST00000563874 ZNF621Q6ZSS3 439 aa12.84□□□□□ -0.35
CLN3-210ENST00000563874 SLC24A5Q71RS6 500 aa12.84□□□□□ -0.35
CLN3-210ENST00000563874 NTMT1Q9BV86 223 aa12.84□□□□□ -0.35
CLN3-210ENST00000563874 DCSTAMPQ9H295 470 aa12.84□□□□□ -0.35
CLN3-210ENST00000563874 THG1LQ9NWX6 298 aaKnown RBP12.84□□□□□ -0.35
CLN3-210ENST00000563874 PIKFYVEQ9Y2I7 2098 aa12.84□□□□□ -0.35
CLN3-210ENST00000563874 CHD5Q8TDI0 1954 aa12.84□□□□□ -0.35
CLN3-210ENST00000563874 A0A1B0GVM2 712 aa12.84□□□□□ -0.35
CLN3-210ENST00000563874 WNT9AO14904 365 aa12.84□□□□□ -0.35
CLN3-210ENST00000563874 SYN3O14994 580 aa12.84□□□□□ -0.35
CLN3-210ENST00000563874 ADAM12O43184 909 aa12.84□□□□□ -0.35
CLN3-210ENST00000563874 CCNDBP1O95273 360 aa12.84□□□□□ -0.35
CLN3-210ENST00000563874 PGLSO95336 258 aa12.84□□□□□ -0.35
CLN3-210ENST00000563874 OXSR1O95747 527 aaPredicted RBP12.84□□□□□ -0.35
CLN3-210ENST00000563874 FABP3P05413 133 aa12.84□□□□□ -0.35
CLN3-210ENST00000563874 PABPC1P11940 636 aaKnown RBP12.84□□□□□ -0.35
CLN3-210ENST00000563874 COL6A1P12109 1028 aa12.84□□□□□ -0.35
CLN3-210ENST00000563874 TGFBR2P37173 567 aa12.84□□□□□ -0.35
CLN3-210ENST00000563874 LIPAP38571 399 aa12.84□□□□□ -0.35
CLN3-210ENST00000563874 NKX2-5P52952 324 aaPredicted RBP12.84□□□□□ -0.35
CLN3-210ENST00000563874 RPP38P78345 283 aaKnown RBP12.84□□□□□ -0.35
CLN3-210ENST00000563874 KEAP1Q14145 624 aa12.84□□□□□ -0.35
CLN3-210ENST00000563874 SF1Q15637 639 aaKnown RBP12.84□□□□□ -0.35
CLN3-210ENST00000563874 SOWAHCQ53LP3 525 aaPredicted RBP12.84□□□□□ -0.35
CLN3-210ENST00000563874 PDE12Q6L8Q7 609 aaKnown RBP12.84□□□□□ -0.35
CLN3-210ENST00000563874 CERS6Q6ZMG9 384 aa12.84□□□□□ -0.35
CLN3-210ENST00000563874 TAS1R1Q7RTX1 841 aa12.84□□□□□ -0.35
CLN3-210ENST00000563874 PHF10Q8WUB8 498 aaKnown RBP12.84□□□□□ -0.35
CLN3-210ENST00000563874 PROX1Q92786 737 aa12.84□□□□□ -0.35
CLN3-210ENST00000563874 HSH2DQ96JZ2 352 aa12.84□□□□□ -0.35
CLN3-210ENST00000563874 PANX1Q96RD7 426 aa12.84□□□□□ -0.35
CLN3-210ENST00000563874 ZFYVE1Q9HBF4 777 aa12.84□□□□□ -0.35
CLN3-210ENST00000563874 TM9SF3Q9HD45 589 aa12.84□□□□□ -0.35
CLN3-210ENST00000563874 ITM2CQ9NQX7 267 aa12.84□□□□□ -0.35
CLN3-210ENST00000563874 TRPS1Q9UHF7 1281 aa12.84□□□□□ -0.35
CLN3-210ENST00000563874 NDRG4Q9ULP0 352 aaKnown RBP12.84□□□□□ -0.35
CLN3-210ENST00000563874 A0A1W2PQ67 120 aa12.83□□□□□ -0.36
CLN3-210ENST00000563874 EVPLLA8MZ36 301 aa12.83□□□□□ -0.36
CLN3-210ENST00000563874 SH3BGRLO75368 114 aa12.83□□□□□ -0.36
CLN3-210ENST00000563874 WBP4O75554 376 aaKnown RBP12.83□□□□□ -0.36
CLN3-210ENST00000563874 STC2O76061 302 aa12.83□□□□□ -0.36
CLN3-210ENST00000563874 CPSF4O95639 269 aaKnown RBP12.83□□□□□ -0.36
CLN3-210ENST00000563874 DBTP11182 482 aaKnown RBP12.83□□□□□ -0.36
CLN3-210ENST00000563874 ENGP17813 658 aa12.83□□□□□ -0.36
CLN3-210ENST00000563874 DNAJA1P31689 397 aaKnown RBP12.83□□□□□ -0.36
CLN3-210ENST00000563874 ALDH7A1P49419 539 aaKnown RBP12.83□□□□□ -0.36
CLN3-210ENST00000563874 SELENBP1Q13228 472 aa12.83□□□□□ -0.36
CLN3-210ENST00000563874 GPR17Q13304 367 aa12.83□□□□□ -0.36
CLN3-210ENST00000563874 CHRNA6Q15825 494 aa12.83□□□□□ -0.36
CLN3-210ENST00000563874 ZXDCQ2QGD7 858 aaPredicted RBP12.83□□□□□ -0.36
CLN3-210ENST00000563874 GPRC6AQ5T6X5 926 aa12.83□□□□□ -0.36
CLN3-210ENST00000563874 ARMC12Q5T9G4 340 aa12.83□□□□□ -0.36
CLN3-210ENST00000563874 KIAA1614Q5VZ46 1190 aa12.83□□□□□ -0.36
CLN3-210ENST00000563874 TMEM173Q86WV6 379 aaPredicted RBP12.83□□□□□ -0.36
CLN3-210ENST00000563874 RHOXF1Q8NHV9 184 aa12.83□□□□□ -0.36
CLN3-210ENST00000563874 DNASE1L2Q92874 299 aa12.83□□□□□ -0.36
CLN3-210ENST00000563874 MYO19Q96H55 970 aa12.83□□□□□ -0.36
CLN3-210ENST00000563874 CORO1BQ9BR76 489 aa12.83□□□□□ -0.36
CLN3-210ENST00000563874 HECAQ9UBI9 543 aaPredicted RBP12.83□□□□□ -0.36
CLN3-210ENST00000563874 FBXO9Q9UK97 447 aaPredicted RBP12.83□□□□□ -0.36
CLN3-210ENST00000563874 ERVK-11Q9UQG0 969 aa12.83□□□□□ -0.36
CLN3-210ENST00000563874 CLIC1O00299 241 aa12.83□□□□□ -0.36
CLN3-210ENST00000563874 SERPINB1P30740 379 aa12.83□□□□□ -0.36
CLN3-210ENST00000563874 RCVRNP35243 200 aa12.83□□□□□ -0.36
CLN3-210ENST00000563874 RPIAP49247 311 aa12.83□□□□□ -0.36
CLN3-210ENST00000563874 MRPL58Q14197 206 aaKnown RBP12.83□□□□□ -0.36
CLN3-210ENST00000563874 MBTPS1Q14703 1052 aa12.83□□□□□ -0.36
CLN3-210ENST00000563874 CCDC80Q76M96 950 aa12.83□□□□□ -0.36
CLN3-210ENST00000563874 TRIB2Q92519 343 aa12.83□□□□□ -0.36
CLN3-210ENST00000563874 REXO4Q9GZR2 422 aaKnown RBP12.83□□□□□ -0.36
CLN3-210ENST00000563874 IRF2BPLQ9H1B7 796 aa12.83□□□□□ -0.36
CLN3-210ENST00000563874 RNF167Q9H6Y7 350 aa12.83□□□□□ -0.36
CLN3-210ENST00000563874 THUMPD1Q9NXG2 353 aaKnown RBP12.83□□□□□ -0.36
CLN3-210ENST00000563874 MAN2B2Q9Y2E5 1009 aa12.83□□□□□ -0.36
CLN3-210ENST00000563874 OR2A25A4D2G3 310 aa12.82□□□□□ -0.36
CLN3-210ENST00000563874 OR6C75A6NL08 312 aa12.82□□□□□ -0.36
CLN3-210ENST00000563874 TMEM189-UBE2V1I3L0A0 370 aa12.82□□□□□ -0.36
CLN3-210ENST00000563874 FZD6O60353 706 aa12.82□□□□□ -0.36
CLN3-210ENST00000563874 WDR47O94967 919 aa12.82□□□□□ -0.36
CLN3-210ENST00000563874 ITGALP20701 1170 aa12.82□□□□□ -0.36
CLN3-210ENST00000563874 FPR1P21462 350 aa12.82□□□□□ -0.36
CLN3-210ENST00000563874 CLECL1Q8IZS7 167 aa12.82□□□□□ -0.36
CLN3-210ENST00000563874 SVOPQ8N4V2 548 aa12.82□□□□□ -0.36
CLN3-210ENST00000563874 BEND7Q8N7W2 519 aaPredicted RBP12.82□□□□□ -0.36
CLN3-210ENST00000563874 C2orf69Q8N8R5 385 aa12.82□□□□□ -0.36
CLN3-210ENST00000563874 APH1BQ8WW43 257 aa12.82□□□□□ -0.36
CLN3-210ENST00000563874 KCNC2Q96PR1 638 aa12.82□□□□□ -0.36
CLN3-210ENST00000563874 RNF38Q9H0F5 515 aa12.82□□□□□ -0.36
CLN3-210ENST00000563874 PRM3Q9NNZ6 103 aa12.82□□□□□ -0.36
CLN3-210ENST00000563874 KIAA1522Q9P206 1035 aaPredicted RBP12.82□□□□□ -0.36
CLN3-210ENST00000563874 PLXNA4Q9HCM2 1894 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms