RNA–Protein interactions for RNA: ENST00000562626.1

CLK3-208, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 812 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-208ENST00000562626 C1GALT1Q9NS00 363 aa9.42□□□□□ -0.9
CLK3-208ENST00000562626 FOXJ2Q9P0K8 574 aa9.42□□□□□ -0.9
CLK3-208ENST00000562626 XPR1Q9UBH6 696 aa9.42□□□□□ -0.9
CLK3-208ENST00000562626 PISDQ9UG56 409 aa9.42□□□□□ -0.9
CLK3-208ENST00000562626 LNPEPQ9UIQ6 1025 aa9.42□□□□□ -0.9
CLK3-208ENST00000562626 TLK1Q9UKI8 766 aa9.42□□□□□ -0.9
CLK3-208ENST00000562626 RNF112Q9ULX5 631 aa9.42□□□□□ -0.9
CLK3-208ENST00000562626 BTRCQ9Y297 605 aa9.42□□□□□ -0.9
CLK3-208ENST00000562626 PCSK5Q92824 1860 aa9.42□□□□□ -0.9
CLK3-208ENST00000562626 MAST4O15021 2626 aa9.41□□□□□ -0.9
CLK3-208ENST00000562626 C1QTNF9BB2RNN3 333 aa9.41□□□□□ -0.9
CLK3-208ENST00000562626 SUPT3HB4E1H0 165 aa9.41□□□□□ -0.9
CLK3-208ENST00000562626 H3BMH7 237 aa9.41□□□□□ -0.9
CLK3-208ENST00000562626 AGPSO00116 658 aa9.41□□□□□ -0.9
CLK3-208ENST00000562626 MATN2O00339 956 aa9.41□□□□□ -0.9
CLK3-208ENST00000562626 MAP2K7O14733 419 aa9.41□□□□□ -0.9
CLK3-208ENST00000562626 PLD2O14939 933 aa9.41□□□□□ -0.9
CLK3-208ENST00000562626 HGSO14964 777 aaPredicted RBP9.41□□□□□ -0.9
CLK3-208ENST00000562626 KLK8O60259 260 aa9.41□□□□□ -0.9
CLK3-208ENST00000562626 BRINP1O60477 761 aa9.41□□□□□ -0.9
CLK3-208ENST00000562626 SUPT3HO75486 399 aa9.41□□□□□ -0.9
CLK3-208ENST00000562626 ZBTB11O95625 1053 aaPredicted RBP9.41□□□□□ -0.9
CLK3-208ENST00000562626 HIST1H2AGP0C0S8 130 aaPredicted RBP9.41□□□□□ -0.9
CLK3-208ENST00000562626 C1QTNF9P0C862 333 aa9.41□□□□□ -0.9
CLK3-208ENST00000562626 NPPBP16860 134 aa9.41□□□□□ -0.9
CLK3-208ENST00000562626 ZNF28P17035 718 aa9.41□□□□□ -0.9
CLK3-208ENST00000562626 KRT15P19012 456 aa9.41□□□□□ -0.9
CLK3-208ENST00000562626 HIST1H2ADP20671 130 aa9.41□□□□□ -0.9
CLK3-208ENST00000562626 RPA3P35244 121 aaPredicted RBP9.41□□□□□ -0.9
CLK3-208ENST00000562626 HSPA7P48741 367 aa9.41□□□□□ -0.9
CLK3-208ENST00000562626 MAPK10P53779 464 aa9.41□□□□□ -0.9
CLK3-208ENST00000562626 CDKL1Q00532 357 aa9.41□□□□□ -0.9
CLK3-208ENST00000562626 MEF2AQ02078 507 aaPredicted RBP9.41□□□□□ -0.9
CLK3-208ENST00000562626 SLC18A2Q05940 514 aa9.41□□□□□ -0.9
CLK3-208ENST00000562626 IFFO1Q0D2I5 559 aa9.41□□□□□ -0.9
CLK3-208ENST00000562626 RTP5Q14D33 572 aa9.41□□□□□ -0.9
CLK3-208ENST00000562626 ACAP2Q15057 778 aa9.41□□□□□ -0.9
CLK3-208ENST00000562626 SF1Q15637 639 aaKnown RBP9.41□□□□□ -0.9
CLK3-208ENST00000562626 KRT71Q3SY84 523 aa9.41□□□□□ -0.9
CLK3-208ENST00000562626 TNFAIP8L3Q5GJ75 292 aa9.41□□□□□ -0.9
CLK3-208ENST00000562626 CEP85LQ5SZL2 805 aa9.41□□□□□ -0.9
CLK3-208ENST00000562626 PRAMEF13Q5VWM6 474 aa9.41□□□□□ -0.9
CLK3-208ENST00000562626 ZNF425Q6IV72 752 aa9.41□□□□□ -0.9
CLK3-208ENST00000562626 FRA10AC1Q70Z53 315 aa9.41□□□□□ -0.9
CLK3-208ENST00000562626 RPS27LQ71UM5 84 aaKnown RBP9.41□□□□□ -0.9
CLK3-208ENST00000562626 PAQR7Q86WK9 346 aa9.41□□□□□ -0.9
CLK3-208ENST00000562626 FAM129CQ86XR2 697 aa9.41□□□□□ -0.9
CLK3-208ENST00000562626 PLD3Q8IV08 490 aa9.41□□□□□ -0.9
CLK3-208ENST00000562626 D2HGDHQ8N465 521 aa9.41□□□□□ -0.9
CLK3-208ENST00000562626 FBXO39Q8N4B4 442 aa9.41□□□□□ -0.9
CLK3-208ENST00000562626 DTWD1Q8N5C7 304 aa9.41□□□□□ -0.9
CLK3-208ENST00000562626 C19orf47Q8N9M1 422 aaKnown RBP9.41□□□□□ -0.9
CLK3-208ENST00000562626 AGBL5Q8NDL9 886 aa9.41□□□□□ -0.9
CLK3-208ENST00000562626 HNRNPLLQ8WVV9 542 aaKnown RBP9.41□□□□□ -0.9
CLK3-208ENST00000562626 USP7Q93009 1102 aa9.41□□□□□ -0.9
CLK3-208ENST00000562626 HIST1H2AHQ96KK5 128 aa9.41□□□□□ -0.9
CLK3-208ENST00000562626 TSNARE1Q96NA8 513 aa9.41□□□□□ -0.9
CLK3-208ENST00000562626 HIST1H2AJQ99878 128 aa9.41□□□□□ -0.9
CLK3-208ENST00000562626 H2AFJQ9BTM1 129 aa9.41□□□□□ -0.9
CLK3-208ENST00000562626 DPH7Q9BTV6 452 aa9.41□□□□□ -0.9
CLK3-208ENST00000562626 STRADBQ9C0K7 418 aa9.41□□□□□ -0.9
CLK3-208ENST00000562626 POLR1BQ9H9Y6 1135 aa9.41□□□□□ -0.9
CLK3-208ENST00000562626 CCDC177Q9NQR7 707 aaPredicted RBP9.41□□□□□ -0.9
CLK3-208ENST00000562626 NUDT4Q9NZJ9 180 aa9.41□□□□□ -0.9
CLK3-208ENST00000562626 CD274Q9NZQ7 290 aa9.41□□□□□ -0.9
CLK3-208ENST00000562626 CPSF2Q9P2I0 782 aaKnown RBP9.41□□□□□ -0.9
CLK3-208ENST00000562626 PTBP2Q9UKA9 531 aaKnown RBP9.41□□□□□ -0.9
CLK3-208ENST00000562626 SLC22A14Q9Y267 594 aa9.41□□□□□ -0.9
CLK3-208ENST00000562626 PCDHB11Q9Y5F2 797 aa9.41□□□□□ -0.9
CLK3-208ENST00000562626 FREM2Q5SZK8 3169 aa9.41□□□□□ -0.9
CLK3-208ENST00000562626 ACACAQ13085 2346 aa9.4□□□□□ -0.9
CLK3-208ENST00000562626 LOC105369274A0A096LPK9 316 aa9.4□□□□□ -0.9
CLK3-208ENST00000562626 LOC102723532A0A0G2JNH3 316 aa9.4□□□□□ -0.9
CLK3-208ENST00000562626 TEX51A0A1B0GUA7 166 aa9.4□□□□□ -0.9
CLK3-208ENST00000562626 OR2A25A4D2G3 310 aa9.4□□□□□ -0.9
CLK3-208ENST00000562626 CDRT15L2A8MXV6 281 aa9.4□□□□□ -0.9
CLK3-208ENST00000562626 H7BY64 318 aa9.4□□□□□ -0.9
CLK3-208ENST00000562626 TOX3O15405 576 aaPredicted RBP9.4□□□□□ -0.9
CLK3-208ENST00000562626 TLX3O43711 291 aaPredicted RBP9.4□□□□□ -0.9
CLK3-208ENST00000562626 KDM1AO60341 852 aa9.4□□□□□ -0.9
CLK3-208ENST00000562626 SPAG7O75391 227 aa9.4□□□□□ -0.9
CLK3-208ENST00000562626 WDR47O94967 919 aa9.4□□□□□ -0.9
CLK3-208ENST00000562626 TNFSF15O95150 251 aa9.4□□□□□ -0.9
CLK3-208ENST00000562626 SIX3O95343 332 aaPredicted RBP9.4□□□□□ -0.9
CLK3-208ENST00000562626 MED26O95402 600 aa9.4□□□□□ -0.9
CLK3-208ENST00000562626 STATHP02808 62 aa9.4□□□□□ -0.9
CLK3-208ENST00000562626 MT-ND3P03897 115 aa9.4□□□□□ -0.9
CLK3-208ENST00000562626 ANXA5P08758 320 aa9.4□□□□□ -0.9
CLK3-208ENST00000562626 COL6A2P12110 1019 aa9.4□□□□□ -0.9
CLK3-208ENST00000562626 CDH1P12830 882 aa9.4□□□□□ -0.9
CLK3-208ENST00000562626 VARSP26640 1264 aaKnown RBP9.4□□□□□ -0.9
CLK3-208ENST00000562626 CSTF2P33240 577 aaKnown RBP eCLIP9.4□□□□□ -0.9
CLK3-208ENST00000562626 GGT5P36269 586 aa9.4□□□□□ -0.9
CLK3-208ENST00000562626 HSD11B2P80365 405 aa9.4□□□□□ -0.9
CLK3-208ENST00000562626 MC2RQ01718 297 aa9.4□□□□□ -0.9
CLK3-208ENST00000562626 PRDX1Q06830 199 aaKnown RBP9.4□□□□□ -0.9
CLK3-208ENST00000562626 CASP8Q14790 479 aa9.4□□□□□ -0.9
CLK3-208ENST00000562626 FAM83EQ2M2I3 478 aa9.4□□□□□ -0.9
CLK3-208ENST00000562626 CATSPEREQ5SY80 951 aa9.4□□□□□ -0.9
CLK3-208ENST00000562626 LGSNQ5TDP6 509 aa9.4□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 54.9 ms