RNA–Protein interactions for RNA: ENST00000561381.5

USP3-220, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 979 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-220ENST00000561381 RAD51AP1Q96B01 352 aa11.12□□□□□ -0.63
USP3-220ENST00000561381 BIRC8Q96P09 236 aa11.12□□□□□ -0.63
USP3-220ENST00000561381 BARD1Q99728 777 aaKnown RBP11.12□□□□□ -0.63
USP3-220ENST00000561381 WDR77Q9BQA1 342 aaPredicted RBP11.12□□□□□ -0.63
USP3-220ENST00000561381 RAB11FIP5Q9BXF6 653 aa11.12□□□□□ -0.63
USP3-220ENST00000561381 IL22Q9GZX6 179 aa11.12□□□□□ -0.63
USP3-220ENST00000561381 SLC26A1Q9H2B4 701 aa11.12□□□□□ -0.63
USP3-220ENST00000561381 SYNPO2LQ9H987 977 aa11.12□□□□□ -0.63
USP3-220ENST00000561381 ENAMQ9NRM1 1142 aa11.12□□□□□ -0.63
USP3-220ENST00000561381 SYBUQ9NX95 663 aa11.12□□□□□ -0.63
USP3-220ENST00000561381 GALPQ9UBC7 116 aa11.12□□□□□ -0.63
USP3-220ENST00000561381 NOVA2Q9UNW9 492 aaKnown RBP11.12□□□□□ -0.63
USP3-220ENST00000561381 PRRC2CQ9Y520 2896 aaKnown RBP11.12□□□□□ -0.63
USP3-220ENST00000561381 POLEQ07864 2286 aa11.11□□□□□ -0.63
USP3-220ENST00000561381 HYKKA2RU49 373 aa11.11□□□□□ -0.63
USP3-220ENST00000561381 VSTM2BA6NLU5 285 aa11.11□□□□□ -0.63
USP3-220ENST00000561381 KLHL41O60662 606 aa11.11□□□□□ -0.63
USP3-220ENST00000561381 DDAH2O95865 285 aa11.11□□□□□ -0.63
USP3-220ENST00000561381 EIF2S1P05198 315 aaKnown RBP11.11□□□□□ -0.63
USP3-220ENST00000561381 F7P08709 466 aaPredicted RBP11.11□□□□□ -0.63
USP3-220ENST00000561381 CDC25BP30305 580 aa11.11□□□□□ -0.63
USP3-220ENST00000561381 GBX1Q14549 363 aa11.11□□□□□ -0.63
USP3-220ENST00000561381 RBBP7Q16576 425 aa11.11□□□□□ -0.63
USP3-220ENST00000561381 EEF1AKMT2Q5JPI9 291 aaKnown RBP11.11□□□□□ -0.63
USP3-220ENST00000561381 ZNF787Q6DD87 383 aa11.11□□□□□ -0.63
USP3-220ENST00000561381 LRRC6Q86X45 466 aa11.11□□□□□ -0.63
USP3-220ENST00000561381 MPP5Q8N3R9 675 aa11.11□□□□□ -0.63
USP3-220ENST00000561381 OR11G2Q8NGC1 345 aa11.11□□□□□ -0.63
USP3-220ENST00000561381 HMGCLL1Q8TB92 370 aa11.11□□□□□ -0.63
USP3-220ENST00000561381 UBE2Q2Q8WVN8 375 aa11.11□□□□□ -0.63
USP3-220ENST00000561381 LPGAT1Q92604 370 aa11.11□□□□□ -0.63
USP3-220ENST00000561381 NACC2Q96BF6 587 aa11.11□□□□□ -0.63
USP3-220ENST00000561381 C10orf90Q96M02 699 aa11.11□□□□□ -0.63
USP3-220ENST00000561381 TRIM56Q9BRZ2 755 aaKnown RBP11.11□□□□□ -0.63
USP3-220ENST00000561381 KIFC1Q9BW19 673 aa11.11□□□□□ -0.63
USP3-220ENST00000561381 ACAT2Q9BWD1 397 aa11.11□□□□□ -0.63
USP3-220ENST00000561381 TSGA10Q9BZW7 698 aa11.11□□□□□ -0.63
USP3-220ENST00000561381 IL1RAPL1Q9NZN1 696 aa11.11□□□□□ -0.63
USP3-220ENST00000561381 BFARQ9NZS9 450 aa11.11□□□□□ -0.63
USP3-220ENST00000561381 ZC3H7BQ9UGR2 993 aaKnown RBP11.11□□□□□ -0.63
USP3-220ENST00000561381 DRG1Q9Y295 367 aaKnown RBP11.11□□□□□ -0.63
USP3-220ENST00000561381 CRYL1Q9Y2S2 319 aa11.11□□□□□ -0.63
USP3-220ENST00000561381 KLK4Q9Y5K2 254 aa11.11□□□□□ -0.63
USP3-220ENST00000561381 SVILO95425 2214 aa11.11□□□□□ -0.63
USP3-220ENST00000561381 OR2A25A4D2G3 310 aa11.1□□□□□ -0.63
USP3-220ENST00000561381 ARHGEF33A8MVX0 844 aa11.1□□□□□ -0.63
USP3-220ENST00000561381 FFAR3O14843 346 aa11.1□□□□□ -0.63
USP3-220ENST00000561381 KPNA5O15131 536 aa11.1□□□□□ -0.63
USP3-220ENST00000561381 GPR42O15529 346 aa11.1□□□□□ -0.63
USP3-220ENST00000561381 SRPX2O60687 465 aaPredicted RBP11.1□□□□□ -0.63
USP3-220ENST00000561381 AVILO75366 819 aa11.1□□□□□ -0.63
USP3-220ENST00000561381 FKBP9O95302 570 aa11.1□□□□□ -0.63
USP3-220ENST00000561381 MATN4O95460 622 aa11.1□□□□□ -0.63
USP3-220ENST00000561381 FGGP02679 453 aa11.1□□□□□ -0.63
USP3-220ENST00000561381 NPY2RP49146 381 aa11.1□□□□□ -0.63
USP3-220ENST00000561381 KLC1Q07866 573 aa11.1□□□□□ -0.63
USP3-220ENST00000561381 TRIP13Q15645 432 aaPredicted RBP11.1□□□□□ -0.63
USP3-220ENST00000561381 TYSND1Q2T9J0 566 aa11.1□□□□□ -0.63
USP3-220ENST00000561381 FAM214AQ32MH5 1076 aa11.1□□□□□ -0.63
USP3-220ENST00000561381 TUBB8Q3ZCM7 444 aa11.1□□□□□ -0.63
USP3-220ENST00000561381 ACSBG2Q5FVE4 666 aa11.1□□□□□ -0.63
USP3-220ENST00000561381 AGAP7PQ5VUJ5 663 aa11.1□□□□□ -0.63
USP3-220ENST00000561381 FBXO42Q6P3S6 717 aa11.1□□□□□ -0.63
USP3-220ENST00000561381 DRICH1Q6PGQ1 229 aaPredicted RBP11.1□□□□□ -0.63
USP3-220ENST00000561381 SUSD1Q6UWL2 747 aa11.1□□□□□ -0.63
USP3-220ENST00000561381 IGFL2Q6UWQ7 119 aa11.1□□□□□ -0.63
USP3-220ENST00000561381 RNF44Q7L0R7 432 aa11.1□□□□□ -0.63
USP3-220ENST00000561381 GSTA5Q7RTV2 222 aa11.1□□□□□ -0.63
USP3-220ENST00000561381 RAB42Q8N4Z0 105 aa11.1□□□□□ -0.63
USP3-220ENST00000561381 DNAJB14Q8TBM8 379 aa11.1□□□□□ -0.63
USP3-220ENST00000561381 STT3BQ8TCJ2 826 aa11.1□□□□□ -0.63
USP3-220ENST00000561381 PPP4R1Q8TF05 950 aa11.1□□□□□ -0.63
USP3-220ENST00000561381 C8orf44Q96CB5 159 aa11.1□□□□□ -0.63
USP3-220ENST00000561381 THOC3Q96J01 351 aaKnown RBP11.1□□□□□ -0.63
USP3-220ENST00000561381 CNDP1Q96KN2 507 aa11.1□□□□□ -0.63
USP3-220ENST00000561381 FOPNLQ96NB1 174 aa11.1□□□□□ -0.63
USP3-220ENST00000561381 AGAP4Q96P64 663 aa11.1□□□□□ -0.63
USP3-220ENST00000561381 DPH7Q9BTV6 452 aa11.1□□□□□ -0.63
USP3-220ENST00000561381 CRB3Q9BUF7 120 aa11.1□□□□□ -0.63
USP3-220ENST00000561381 LHPPQ9H008 270 aa11.1□□□□□ -0.63
USP3-220ENST00000561381 MRM3Q9HC36 420 aaKnown RBP11.1□□□□□ -0.63
USP3-220ENST00000561381 ZNF304Q9HCX3 659 aa11.1□□□□□ -0.63
USP3-220ENST00000561381 SEMA3GQ9NS98 782 aa11.1□□□□□ -0.63
USP3-220ENST00000561381 NXT1Q9UKK6 140 aaKnown RBP11.1□□□□□ -0.63
USP3-220ENST00000561381 SLC5A6Q9Y289 635 aa11.1□□□□□ -0.63
USP3-220ENST00000561381 FAM169AQ9Y6X4 670 aa11.1□□□□□ -0.63
USP3-220ENST00000561381 ZGRF1Q86YA3 2104 aa11.09□□□□□ -0.63
USP3-220ENST00000561381 DOPEY1Q5JWR5 2465 aa11.09□□□□□ -0.63
USP3-220ENST00000561381 IGKV1-8A0A0C4DH67 115 aa11.09□□□□□ -0.63
USP3-220ENST00000561381 H0YGG7 62 aa11.09□□□□□ -0.63
USP3-220ENST00000561381 E2F3O00716 465 aa11.09□□□□□ -0.63
USP3-220ENST00000561381 KLHL18O94889 574 aa11.09□□□□□ -0.63
USP3-220ENST00000561381 ZGLP1P0C6A0 271 aa11.09□□□□□ -0.63
USP3-220ENST00000561381 ERGP11308 486 aa11.09□□□□□ -0.63
USP3-220ENST00000561381 CHRM3P20309 590 aa11.09□□□□□ -0.63
USP3-220ENST00000561381 CCNFP41002 786 aa11.09□□□□□ -0.63
USP3-220ENST00000561381 VPS41P49754 854 aa11.09□□□□□ -0.63
USP3-220ENST00000561381 ARF3P61204 181 aaPredicted RBP11.09□□□□□ -0.63
USP3-220ENST00000561381 TSTA3Q13630 321 aaPredicted RBP11.09□□□□□ -0.63
USP3-220ENST00000561381 ELOAQ14241 798 aaKnown RBP11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms