RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 AFMIDQ63HM1 303 aa5.28□□□□□ -1.56
VPS13C-209ENST00000560637 TTLL10Q6ZVT0 673 aa5.28□□□□□ -1.56
VPS13C-209ENST00000560637 TDRPQ86YL5 185 aa5.28□□□□□ -1.56
VPS13C-209ENST00000560637 LIX1Q8N485 282 aa5.28□□□□□ -1.56
VPS13C-209ENST00000560637 ZNF276Q8N554 614 aa5.28□□□□□ -1.56
VPS13C-209ENST00000560637 OR52E1Q8NGJ3 308 aa5.28□□□□□ -1.56
VPS13C-209ENST00000560637 OR5M3Q8NGP4 307 aa5.28□□□□□ -1.56
VPS13C-209ENST00000560637 REPS1Q96D71 796 aa5.28□□□□□ -1.56
VPS13C-209ENST00000560637 FAM120BQ96EK7 910 aaKnown RBP5.28□□□□□ -1.56
VPS13C-209ENST00000560637 DNAJA3Q96EY1 480 aa5.28□□□□□ -1.56
VPS13C-209ENST00000560637 MMABQ96EY8 250 aaPredicted RBP5.28□□□□□ -1.56
VPS13C-209ENST00000560637 VMP1Q96GC9 406 aa5.28□□□□□ -1.56
VPS13C-209ENST00000560637 CLPTM1LQ96KA5 538 aa5.28□□□□□ -1.56
VPS13C-209ENST00000560637 OR52E6Q96RD3 313 aa5.28□□□□□ -1.56
VPS13C-209ENST00000560637 SH3GL2Q99962 352 aa5.28□□□□□ -1.56
VPS13C-209ENST00000560637 PRO3102Q9H379 93 aa5.28□□□□□ -1.56
VPS13C-209ENST00000560637 CTPS2Q9NRF8 586 aa5.28□□□□□ -1.56
VPS13C-209ENST00000560637 CUEDC1Q9NWM3 386 aaPredicted RBP5.28□□□□□ -1.56
VPS13C-209ENST00000560637 KLHL42Q9P2K6 505 aa5.28□□□□□ -1.56
VPS13C-209ENST00000560637 EBF1Q9UH73 591 aa5.28□□□□□ -1.56
VPS13C-209ENST00000560637 ZMIZ1Q9ULJ6 1067 aa5.28□□□□□ -1.56
VPS13C-209ENST00000560637 CNOT6Q9ULM6 557 aaKnown RBP5.28□□□□□ -1.56
VPS13C-209ENST00000560637 OR10H1Q9Y4A9 318 aa5.28□□□□□ -1.56
VPS13C-209ENST00000560637 DTNAQ9Y4J8 743 aa5.28□□□□□ -1.56
VPS13C-209ENST00000560637 ACTL7BQ9Y614 415 aa5.28□□□□□ -1.56
VPS13C-209ENST00000560637 NUP214P35658 2090 aaPredicted RBP5.28□□□□□ -1.56
VPS13C-209ENST00000560637 MROH6A6NGR9 719 aa5.27□□□□□ -1.57
VPS13C-209ENST00000560637 GFRA2O00451 464 aa5.27□□□□□ -1.57
VPS13C-209ENST00000560637 ZSCAN9O15535 394 aaPredicted RBP5.27□□□□□ -1.57
VPS13C-209ENST00000560637 AQP9O43315 295 aa5.27□□□□□ -1.57
VPS13C-209ENST00000560637 NUAK1O60285 661 aa5.27□□□□□ -1.57
VPS13C-209ENST00000560637 JUNP05412 331 aaKnown RBP5.27□□□□□ -1.57
VPS13C-209ENST00000560637 PTNP21246 168 aa5.27□□□□□ -1.57
VPS13C-209ENST00000560637 FDXRP22570 491 aa5.27□□□□□ -1.57
VPS13C-209ENST00000560637 GCAP28676 217 aa5.27□□□□□ -1.57
VPS13C-209ENST00000560637 DOC2AQ14183 400 aa5.27□□□□□ -1.57
VPS13C-209ENST00000560637 PTGR1Q14914 329 aa5.27□□□□□ -1.57
VPS13C-209ENST00000560637 CTC1Q2NKJ3 1217 aa5.27□□□□□ -1.57
VPS13C-209ENST00000560637 TECRLQ5HYJ1 363 aa5.27□□□□□ -1.57
VPS13C-209ENST00000560637 HLA-DQA1Q5Y7H0 255 aa5.27□□□□□ -1.57
VPS13C-209ENST00000560637 STEAP4Q687X5 459 aa5.27□□□□□ -1.57
VPS13C-209ENST00000560637 SLC36A4Q6YBV0 504 aa5.27□□□□□ -1.57
VPS13C-209ENST00000560637 FAM83HQ6ZRV2 1179 aaPredicted RBP5.27□□□□□ -1.57
VPS13C-209ENST00000560637 RRM2BQ7LG56 351 aa5.27□□□□□ -1.57
VPS13C-209ENST00000560637 ZNF438Q7Z4V0 828 aa5.27□□□□□ -1.57
VPS13C-209ENST00000560637 C1orf210Q8IVY1 113 aa5.27□□□□□ -1.57
VPS13C-209ENST00000560637 ZC3H7AQ8IWR0 971 aaKnown RBP5.27□□□□□ -1.57
VPS13C-209ENST00000560637 TAGAPQ8N103 731 aa5.27□□□□□ -1.57
VPS13C-209ENST00000560637 OR4K1Q8NGD4 311 aa5.27□□□□□ -1.57
VPS13C-209ENST00000560637 SLC37A2Q8TED4 501 aa5.27□□□□□ -1.57
VPS13C-209ENST00000560637 XAGE5Q8WWM1 108 aa5.27□□□□□ -1.57
VPS13C-209ENST00000560637 SLC5A11Q8WWX8 675 aa5.27□□□□□ -1.57
VPS13C-209ENST00000560637 SDCCAG3Q96C92 435 aa5.27□□□□□ -1.57
VPS13C-209ENST00000560637 CAMK1GQ96NX5 476 aa5.27□□□□□ -1.57
VPS13C-209ENST00000560637 DERL2Q9GZP9 239 aa5.27□□□□□ -1.57
VPS13C-209ENST00000560637 RETREG1Q9H6L5 497 aa5.27□□□□□ -1.57
VPS13C-209ENST00000560637 EFCAB1Q9HAE3 211 aa5.27□□□□□ -1.57
VPS13C-209ENST00000560637 HCN3Q9P1Z3 774 aa5.27□□□□□ -1.57
VPS13C-209ENST00000560637 CPNE7Q9UBL6 633 aa5.27□□□□□ -1.57
VPS13C-209ENST00000560637 SCML1Q9UN30 329 aa5.27□□□□□ -1.57
VPS13C-209ENST00000560637 ZFR2Q9UPR6 939 aaKnown RBP5.27□□□□□ -1.57
VPS13C-209ENST00000560637 ANK1P16157 1881 aa5.27□□□□□ -1.57
VPS13C-209ENST00000560637 LOC105378220A0A1B0GUY1 285 aaPredicted RBP5.27□□□□□ -1.57
VPS13C-209ENST00000560637 A0A1W2PQF6 199 aa5.27□□□□□ -1.57
VPS13C-209ENST00000560637 SLC9B1P1A6NJY1 282 aa5.27□□□□□ -1.57
VPS13C-209ENST00000560637 AREL1O15033 823 aa5.27□□□□□ -1.57
VPS13C-209ENST00000560637 NDUFB5O43674 189 aa5.27□□□□□ -1.57
VPS13C-209ENST00000560637 PROS1P07225 676 aa5.27□□□□□ -1.57
VPS13C-209ENST00000560637 IMPDH1P20839 514 aa5.27□□□□□ -1.57
VPS13C-209ENST00000560637 MAPK1P28482 360 aa5.27□□□□□ -1.57
VPS13C-209ENST00000560637 TLX1P31314 330 aaPredicted RBP5.27□□□□□ -1.57
VPS13C-209ENST00000560637 CCR8P51685 355 aa5.27□□□□□ -1.57
VPS13C-209ENST00000560637 CLDN6P56747 220 aa5.27□□□□□ -1.57
VPS13C-209ENST00000560637 XIAPP98170 497 aa5.27□□□□□ -1.57
VPS13C-209ENST00000560637 PLOD1Q02809 727 aaPredicted RBP5.27□□□□□ -1.57
VPS13C-209ENST00000560637 STX5Q13190 355 aa5.27□□□□□ -1.57
VPS13C-209ENST00000560637 MUM1Q2TAK8 710 aa5.27□□□□□ -1.57
VPS13C-209ENST00000560637 FAM174BQ3ZCQ3 159 aa5.27□□□□□ -1.57
VPS13C-209ENST00000560637 FBXW10Q5XX13 1052 aa5.27□□□□□ -1.57
VPS13C-209ENST00000560637 FRG2Q64ET8 278 aa5.27□□□□□ -1.57
VPS13C-209ENST00000560637 ZC3H14Q6PJT7 736 aaKnown RBP5.27□□□□□ -1.57
VPS13C-209ENST00000560637 SYT13Q7L8C5 426 aa5.27□□□□□ -1.57
VPS13C-209ENST00000560637 BNIPLQ7Z465 357 aa5.27□□□□□ -1.57
VPS13C-209ENST00000560637 GPR180Q86V85 440 aa5.27□□□□□ -1.57
VPS13C-209ENST00000560637 TMEM126BQ8IUX1 230 aa5.27□□□□□ -1.57
VPS13C-209ENST00000560637 GALNT4Q8N4A0 578 aa5.27□□□□□ -1.57
VPS13C-209ENST00000560637 IL22RA1Q8N6P7 574 aa5.27□□□□□ -1.57
VPS13C-209ENST00000560637 TMCO5AQ8N6Q1 288 aa5.27□□□□□ -1.57
VPS13C-209ENST00000560637 ZNF655Q8N720 491 aaPredicted RBP5.27□□□□□ -1.57
VPS13C-209ENST00000560637 TTC29Q8NA56 475 aaPredicted RBP5.27□□□□□ -1.57
VPS13C-209ENST00000560637 PJA1Q8NG27 643 aa5.27□□□□□ -1.57
VPS13C-209ENST00000560637 OR10Q1Q8NGQ4 319 aa5.27□□□□□ -1.57
VPS13C-209ENST00000560637 GIMAP7Q8NHV1 300 aa5.27□□□□□ -1.57
VPS13C-209ENST00000560637 FAM110BQ8TC76 370 aa5.27□□□□□ -1.57
VPS13C-209ENST00000560637 PPCDCQ96CD2 204 aa5.27□□□□□ -1.57
VPS13C-209ENST00000560637 CNDP1Q96KN2 507 aa5.27□□□□□ -1.57
VPS13C-209ENST00000560637 FRG2BQ96QU4 278 aa5.27□□□□□ -1.57
VPS13C-209ENST00000560637 RANBP9Q96S59 729 aa5.27□□□□□ -1.57
VPS13C-209ENST00000560637 PREBQ9HCU5 417 aa5.27□□□□□ -1.57
VPS13C-209ENST00000560637 TM9SF3Q9HD45 589 aa5.27□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms