RNA–Protein interactions for RNA: ENST00000556768.5

SCFD1-222, Transcript of sec1 family domain containing 1, humanhuman

TSL 1 (best)

Gene SCFD1, Length 1,829 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-222ENST00000556768 RNF217Q8TC41 542 aa7.05□□□□□ -1.28
SCFD1-222ENST00000556768 ZNF669Q96BR6 464 aaPredicted RBP7.05□□□□□ -1.28
SCFD1-222ENST00000556768 VPS50Q96JG6 964 aa7.05□□□□□ -1.28
SCFD1-222ENST00000556768 RUNDC3BQ96NL0 473 aa7.05□□□□□ -1.28
SCFD1-222ENST00000556768 BIRC8Q96P09 236 aa7.05□□□□□ -1.28
SCFD1-222ENST00000556768 SERPINB12Q96P63 405 aa7.05□□□□□ -1.28
SCFD1-222ENST00000556768 NAT9Q9BTE0 207 aa7.05□□□□□ -1.28
SCFD1-222ENST00000556768 SLC25A23Q9BV35 468 aa7.05□□□□□ -1.28
SCFD1-222ENST00000556768 AKIRIN1Q9H9L7 192 aaPredicted RBP7.05□□□□□ -1.28
SCFD1-222ENST00000556768 FAM60AQ9NP50 221 aa7.05□□□□□ -1.28
SCFD1-222ENST00000556768 C20orf96Q9NUD7 363 aaPredicted RBP7.05□□□□□ -1.28
SCFD1-222ENST00000556768 EURLQ9NYK6 297 aa7.05□□□□□ -1.28
SCFD1-222ENST00000556768 SNX12Q9UMY4 172 aa7.05□□□□□ -1.28
SCFD1-222ENST00000556768 CDYLQ9Y232 598 aa7.05□□□□□ -1.28
SCFD1-222ENST00000556768 COMMD10Q9Y6G5 202 aa7.05□□□□□ -1.28
SCFD1-222ENST00000556768 PABPN1LA6NDY0 278 aaKnown RBP7.04□□□□□ -1.28
SCFD1-222ENST00000556768 SASH3O75995 380 aa7.04□□□□□ -1.28
SCFD1-222ENST00000556768 USP1O94782 785 aa7.04□□□□□ -1.28
SCFD1-222ENST00000556768 C1orf105O95561 183 aa7.04□□□□□ -1.28
SCFD1-222ENST00000556768 ERVK-10P10266 1014 aa7.04□□□□□ -1.28
SCFD1-222ENST00000556768 MAGP20916 626 aa7.04□□□□□ -1.28
SCFD1-222ENST00000556768 ATP5DP30049 168 aa7.04□□□□□ -1.28
SCFD1-222ENST00000556768 RORAP35398 523 aa7.04□□□□□ -1.28
SCFD1-222ENST00000556768 CASRP41180 1078 aa7.04□□□□□ -1.28
SCFD1-222ENST00000556768 SKIV2L2P42285 1042 aaKnown RBP7.04□□□□□ -1.28
SCFD1-222ENST00000556768 PAFAH1B1P43034 410 aa7.04□□□□□ -1.28
SCFD1-222ENST00000556768 PGDP52209 483 aa7.04□□□□□ -1.28
SCFD1-222ENST00000556768 RPS18P62269 152 aaKnown RBP7.04□□□□□ -1.28
SCFD1-222ENST00000556768 NFKB2Q00653 900 aa7.04□□□□□ -1.28
SCFD1-222ENST00000556768 TLE1Q04724 770 aa7.04□□□□□ -1.28
SCFD1-222ENST00000556768 TSTA3Q13630 321 aaPredicted RBP7.04□□□□□ -1.28
SCFD1-222ENST00000556768 PTK6Q13882 451 aa7.04□□□□□ -1.28
SCFD1-222ENST00000556768 SSPNQ14714 243 aa7.04□□□□□ -1.28
SCFD1-222ENST00000556768 GRM7Q14831 915 aa7.04□□□□□ -1.28
SCFD1-222ENST00000556768 PTCHD3Q3KNS1 767 aa7.04□□□□□ -1.28
SCFD1-222ENST00000556768 YOD1Q5VVQ6 348 aaPredicted RBP7.04□□□□□ -1.28
SCFD1-222ENST00000556768 UGT3A1Q6NUS8 523 aa7.04□□□□□ -1.28
SCFD1-222ENST00000556768 TTC27Q6P3X3 843 aa7.04□□□□□ -1.28
SCFD1-222ENST00000556768 FIGLAQ6QHK4 219 aa7.04□□□□□ -1.28
SCFD1-222ENST00000556768 MICALCLQ6ZW33 695 aa7.04□□□□□ -1.28
SCFD1-222ENST00000556768 TMEM135Q86UB9 458 aa7.04□□□□□ -1.28
SCFD1-222ENST00000556768 TAX1BP1Q86VP1 789 aa7.04□□□□□ -1.28
SCFD1-222ENST00000556768 MCATQ8IVS2 390 aaKnown RBP7.04□□□□□ -1.28
SCFD1-222ENST00000556768 LINC00528Q8N1L1 170 aa7.04□□□□□ -1.28
SCFD1-222ENST00000556768 FAM169BQ8N8A8 192 aa7.04□□□□□ -1.28
SCFD1-222ENST00000556768 TTC29Q8NA56 475 aaPredicted RBP7.04□□□□□ -1.28
SCFD1-222ENST00000556768 CLEC1AQ8NC01 280 aa7.04□□□□□ -1.28
SCFD1-222ENST00000556768 COG1Q8WTW3 980 aa7.04□□□□□ -1.28
SCFD1-222ENST00000556768 LPGAT1Q92604 370 aa7.04□□□□□ -1.28
SCFD1-222ENST00000556768 KCNJ9Q92806 393 aa7.04□□□□□ -1.28
SCFD1-222ENST00000556768 NACC2Q96BF6 587 aa7.04□□□□□ -1.28
SCFD1-222ENST00000556768 FAM136AQ96C01 138 aa7.04□□□□□ -1.28
SCFD1-222ENST00000556768 FER1L6-AS2Q96M78 137 aa7.04□□□□□ -1.28
SCFD1-222ENST00000556768 NRTNQ99748 197 aa7.04□□□□□ -1.28
SCFD1-222ENST00000556768 SPRTNQ9H040 489 aaPredicted RBP7.04□□□□□ -1.28
SCFD1-222ENST00000556768 TIMMDC1Q9NPL8 285 aa7.04□□□□□ -1.28
SCFD1-222ENST00000556768 PPANQ9NQ55 473 aaKnown RBP7.04□□□□□ -1.28
SCFD1-222ENST00000556768 ASH1LQ9NR48 2969 aaKnown RBP7.04□□□□□ -1.28
SCFD1-222ENST00000556768 IL1RAPL1Q9NZN1 696 aa7.04□□□□□ -1.28
SCFD1-222ENST00000556768 CIDEBQ9UHD4 219 aa7.04□□□□□ -1.28
SCFD1-222ENST00000556768 TLK1Q9UKI8 766 aa7.04□□□□□ -1.28
SCFD1-222ENST00000556768 PPT2Q9UMR5 302 aa7.04□□□□□ -1.28
SCFD1-222ENST00000556768 SDK2Q58EX2 2172 aa7.04□□□□□ -1.28
SCFD1-222ENST00000556768 ARGFXA6NJG6 315 aa7.04□□□□□ -1.28
SCFD1-222ENST00000556768 NDC80O14777 642 aa7.04□□□□□ -1.28
SCFD1-222ENST00000556768 NIPSNAP2O75323 286 aa7.04□□□□□ -1.28
SCFD1-222ENST00000556768 VPS26AO75436 327 aa7.04□□□□□ -1.28
SCFD1-222ENST00000556768 TMEM63AO94886 807 aa7.04□□□□□ -1.28
SCFD1-222ENST00000556768 ALPPP05187 535 aa7.04□□□□□ -1.28
SCFD1-222ENST00000556768 FURINP09958 794 aa7.04□□□□□ -1.28
SCFD1-222ENST00000556768 ENO3P13929 434 aaPredicted RBP7.04□□□□□ -1.28
SCFD1-222ENST00000556768 ARNTP27540 789 aa7.04□□□□□ -1.28
SCFD1-222ENST00000556768 CMPK1P30085 196 aa7.04□□□□□ -1.28
SCFD1-222ENST00000556768 RPA3P35244 121 aaPredicted RBP7.04□□□□□ -1.28
SCFD1-222ENST00000556768 FOLR3P41439 243 aa7.04□□□□□ -1.28
SCFD1-222ENST00000556768 GRIA3P42263 894 aa7.04□□□□□ -1.28
SCFD1-222ENST00000556768 GNG11P61952 73 aa7.04□□□□□ -1.28
SCFD1-222ENST00000556768 CTBP1Q13363 440 aa7.04□□□□□ -1.28
SCFD1-222ENST00000556768 ARHGAP19Q14CB8 494 aa7.04□□□□□ -1.28
SCFD1-222ENST00000556768 KLHL38Q2WGJ6 581 aa7.04□□□□□ -1.28
SCFD1-222ENST00000556768 DEFB110Q30KQ9 67 aa7.04□□□□□ -1.28
SCFD1-222ENST00000556768 NKAIN1Q4KMZ8 207 aa7.04□□□□□ -1.28
SCFD1-222ENST00000556768 ZNF789Q5FWF6 425 aa7.04□□□□□ -1.28
SCFD1-222ENST00000556768 SAMD5Q5TGI4 173 aa7.04□□□□□ -1.28
SCFD1-222ENST00000556768 C1orf189Q5VU69 101 aa7.04□□□□□ -1.28
SCFD1-222ENST00000556768 ANKRD22Q5VYY1 191 aa7.04□□□□□ -1.28
SCFD1-222ENST00000556768 LRRC8EQ6NSJ5 796 aa7.04□□□□□ -1.28
SCFD1-222ENST00000556768 TTLL10Q6ZVT0 673 aa7.04□□□□□ -1.28
SCFD1-222ENST00000556768 SYDE1Q6ZW31 735 aaPredicted RBP7.04□□□□□ -1.28
SCFD1-222ENST00000556768 NEK10Q6ZWH5 1172 aa7.04□□□□□ -1.28
SCFD1-222ENST00000556768 REXO1L1PQ8IX06 675 aa7.04□□□□□ -1.28
SCFD1-222ENST00000556768 PDIK1LQ8N165 341 aa7.04□□□□□ -1.28
SCFD1-222ENST00000556768 DNAJC22Q8N4W6 341 aa7.04□□□□□ -1.28
SCFD1-222ENST00000556768 LMNTD1Q8N9Z9 388 aa7.04□□□□□ -1.28
SCFD1-222ENST00000556768 LINC01555Q8NAE3 123 aa7.04□□□□□ -1.28
SCFD1-222ENST00000556768 OR9A1PQ8NGU1 263 aa7.04□□□□□ -1.28
SCFD1-222ENST00000556768 HMGCLL1Q8TB92 370 aa7.04□□□□□ -1.28
SCFD1-222ENST00000556768 LKAAEAR1Q8TD35 194 aa7.04□□□□□ -1.28
SCFD1-222ENST00000556768 SMPDL3AQ92484 453 aa7.04□□□□□ -1.28
SCFD1-222ENST00000556768 PTERQ96BW5 349 aa7.04□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms