RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 BBIP1A8MTZ0 92 aa5.42□□□□□ -1.54
LIMA1-215ENST00000552823 PDZK1P1A8MUH7 402 aa5.42□□□□□ -1.54
LIMA1-215ENST00000552823 SLC28A1O00337 649 aa5.42□□□□□ -1.54
LIMA1-215ENST00000552823 AREL1O15033 823 aa5.42□□□□□ -1.54
LIMA1-215ENST00000552823 PPM1DO15297 605 aa5.42□□□□□ -1.54
LIMA1-215ENST00000552823 HNRNPRO43390 633 aaKnown RBP5.42□□□□□ -1.54
LIMA1-215ENST00000552823 XYLBO75191 536 aa5.42□□□□□ -1.54
LIMA1-215ENST00000552823 EEDO75530 441 aaKnown RBP5.42□□□□□ -1.54
LIMA1-215ENST00000552823 CATP04040 527 aaKnown RBP5.42□□□□□ -1.54
LIMA1-215ENST00000552823 CYP2A6P11509 494 aaPredicted RBP5.42□□□□□ -1.54
LIMA1-215ENST00000552823 PFKLP17858 780 aa5.42□□□□□ -1.54
LIMA1-215ENST00000552823 EPORP19235 508 aa5.42□□□□□ -1.54
LIMA1-215ENST00000552823 CD22P20273 847 aa5.42□□□□□ -1.54
LIMA1-215ENST00000552823 AGXTP21549 392 aa5.42□□□□□ -1.54
LIMA1-215ENST00000552823 FSHRP23945 695 aa5.42□□□□□ -1.54
LIMA1-215ENST00000552823 AOAHP28039 575 aa5.42□□□□□ -1.54
LIMA1-215ENST00000552823 FMO3P31513 532 aa5.42□□□□□ -1.54
LIMA1-215ENST00000552823 VIPR1P32241 457 aa5.42□□□□□ -1.54
LIMA1-215ENST00000552823 KIR3DL1P43629 444 aa5.42□□□□□ -1.54
LIMA1-215ENST00000552823 ZFP36L2P47974 494 aaKnown RBP5.42□□□□□ -1.54
LIMA1-215ENST00000552823 TMED1Q13445 227 aa5.42□□□□□ -1.54
LIMA1-215ENST00000552823 GPM6BQ13491 265 aa5.42□□□□□ -1.54
LIMA1-215ENST00000552823 SLBPQ14493 270 aaKnown RBP eCLIP5.42□□□□□ -1.54
LIMA1-215ENST00000552823 CDKN3Q16667 212 aa5.42□□□□□ -1.54
LIMA1-215ENST00000552823 NOXRED1Q6NXP6 359 aa5.42□□□□□ -1.54
LIMA1-215ENST00000552823 ELMSAN1Q6PJG2 1045 aa5.42□□□□□ -1.54
LIMA1-215ENST00000552823 ZDHHC13Q8IUH4 622 aa5.42□□□□□ -1.54
LIMA1-215ENST00000552823 VN1R2Q8NFZ6 395 aa5.42□□□□□ -1.54
LIMA1-215ENST00000552823 NEIL2Q969S2 332 aa5.42□□□□□ -1.54
LIMA1-215ENST00000552823 ARRDC3Q96B67 414 aa5.42□□□□□ -1.54
LIMA1-215ENST00000552823 YIPF4Q9BSR8 244 aa5.42□□□□□ -1.54
LIMA1-215ENST00000552823 BDH2Q9BUT1 245 aa5.42□□□□□ -1.54
LIMA1-215ENST00000552823 ROGDIQ9GZN7 287 aa5.42□□□□□ -1.54
LIMA1-215ENST00000552823 RERGLQ9H628 205 aa5.42□□□□□ -1.54
LIMA1-215ENST00000552823 STOX2Q9P2F5 926 aaPredicted RBP5.42□□□□□ -1.54
LIMA1-215ENST00000552823 EBF1Q9UH73 591 aa5.42□□□□□ -1.54
LIMA1-215ENST00000552823 RAB26Q9ULW5 256 aa5.42□□□□□ -1.54
LIMA1-215ENST00000552823 SNX6Q9UNH7 406 aa5.42□□□□□ -1.54
LIMA1-215ENST00000552823 SH3GLB1Q9Y371 365 aa5.42□□□□□ -1.54
LIMA1-215ENST00000552823 ASB3Q9Y575 518 aa5.42□□□□□ -1.54
LIMA1-215ENST00000552823 ZDBF2Q9HCK1 2354 aa5.42□□□□□ -1.54
LIMA1-215ENST00000552823 LINC01553A4QN01 128 aa5.42□□□□□ -1.54
LIMA1-215ENST00000552823 IGLON5A6NGN9 336 aa5.42□□□□□ -1.54
LIMA1-215ENST00000552823 HEPACAM2A8MVW5 462 aa5.42□□□□□ -1.54
LIMA1-215ENST00000552823 H7C0S8 307 aa5.42□□□□□ -1.54
LIMA1-215ENST00000552823 CLIC1O00299 241 aa5.42□□□□□ -1.54
LIMA1-215ENST00000552823 TOR1BO14657 336 aa5.42□□□□□ -1.54
LIMA1-215ENST00000552823 WNT9AO14904 365 aa5.42□□□□□ -1.54
LIMA1-215ENST00000552823 SLC22A2O15244 555 aa5.42□□□□□ -1.54
LIMA1-215ENST00000552823 TPST2O60704 377 aa5.42□□□□□ -1.54
LIMA1-215ENST00000552823 LILRB3O75022 631 aa5.42□□□□□ -1.54
LIMA1-215ENST00000552823 SOCS5O75159 536 aa5.42□□□□□ -1.54
LIMA1-215ENST00000552823 DEAF1O75398 565 aaPredicted RBP5.42□□□□□ -1.54
LIMA1-215ENST00000552823 KLK1P06870 262 aa5.42□□□□□ -1.54
LIMA1-215ENST00000552823 C8BP07358 591 aa5.42□□□□□ -1.54
LIMA1-215ENST00000552823 ACP5P13686 325 aa5.42□□□□□ -1.54
LIMA1-215ENST00000552823 CD72P21854 359 aa5.42□□□□□ -1.54
LIMA1-215ENST00000552823 SHMT2P34897 504 aa5.42□□□□□ -1.54
LIMA1-215ENST00000552823 MAPK8P45983 427 aa5.42□□□□□ -1.54
LIMA1-215ENST00000552823 MASP1P48740 699 aa5.42□□□□□ -1.54
LIMA1-215ENST00000552823 PLA2G16P53816 162 aa5.42□□□□□ -1.54
LIMA1-215ENST00000552823 C2orf80Q0P641 193 aa5.42□□□□□ -1.54
LIMA1-215ENST00000552823 TRAP1Q12931 704 aaKnown RBP5.42□□□□□ -1.54
LIMA1-215ENST00000552823 MADCAM1Q13477 382 aa5.42□□□□□ -1.54
LIMA1-215ENST00000552823 PON2Q15165 354 aa5.42□□□□□ -1.54
LIMA1-215ENST00000552823 AASDHQ4L235 1098 aaPredicted RBP5.42□□□□□ -1.54
LIMA1-215ENST00000552823 NHSL2Q5HYW2 709 aa5.42□□□□□ -1.54
LIMA1-215ENST00000552823 FAM78AQ5JUQ0 283 aa5.42□□□□□ -1.54
LIMA1-215ENST00000552823 TMEM240Q5SV17 173 aa5.42□□□□□ -1.54
LIMA1-215ENST00000552823 TANGO2Q6ICL3 276 aa5.42□□□□□ -1.54
LIMA1-215ENST00000552823 PRMT9Q6P2P2 845 aa5.42□□□□□ -1.54
LIMA1-215ENST00000552823 ZNF852Q6ZMS4 543 aa5.42□□□□□ -1.54
LIMA1-215ENST00000552823 TMEM26Q6ZUK4 368 aa5.42□□□□□ -1.54
LIMA1-215ENST00000552823 TMEM179BQ7Z7N9 219 aa5.42□□□□□ -1.54
LIMA1-215ENST00000552823 MEX3DQ86XN8 651 aaKnown RBP5.42□□□□□ -1.54
LIMA1-215ENST00000552823 MARVELD2Q8N4S9 558 aa5.42□□□□□ -1.54
LIMA1-215ENST00000552823 ATG16L2Q8NAA4 619 aa5.42□□□□□ -1.54
LIMA1-215ENST00000552823 OR5AR1Q8NGP9 310 aa5.42□□□□□ -1.54
LIMA1-215ENST00000552823 WDR48Q8TAF3 677 aa5.42□□□□□ -1.54
LIMA1-215ENST00000552823 ASB11Q8WXH4 323 aa5.42□□□□□ -1.54
LIMA1-215ENST00000552823 FATE1Q969F0 183 aa5.42□□□□□ -1.54
LIMA1-215ENST00000552823 GLYATL1Q969I3 302 aa5.42□□□□□ -1.54
LIMA1-215ENST00000552823 CIDECQ96AQ7 238 aaPredicted RBP5.42□□□□□ -1.54
LIMA1-215ENST00000552823 TRAPPC9Q96Q05 1148 aa5.42□□□□□ -1.54
LIMA1-215ENST00000552823 PHOX2BQ99453 314 aa5.42□□□□□ -1.54
LIMA1-215ENST00000552823 RAD9AQ99638 391 aa5.42□□□□□ -1.54
LIMA1-215ENST00000552823 C9orf16Q9BUW7 83 aa5.42□□□□□ -1.54
LIMA1-215ENST00000552823 OSBPL11Q9BXB4 747 aa5.42□□□□□ -1.54
LIMA1-215ENST00000552823 SPNS1Q9H2V7 528 aa5.42□□□□□ -1.54
LIMA1-215ENST00000552823 OLAHQ9NV23 265 aa5.42□□□□□ -1.54
LIMA1-215ENST00000552823 LMCD1Q9NZU5 365 aa5.42□□□□□ -1.54
LIMA1-215ENST00000552823 ZIM2Q9NZV7 527 aa5.42□□□□□ -1.54
LIMA1-215ENST00000552823 TESMINQ9Y4I5 508 aa5.42□□□□□ -1.54
LIMA1-215ENST00000552823 SPTBN5Q9NRC6 3674 aaKnown RBP5.42□□□□□ -1.54
LIMA1-215ENST00000552823 PATJQ8NI35 1801 aa5.42□□□□□ -1.54
LIMA1-215ENST00000552823 PCM1Q15154 2024 aa5.42□□□□□ -1.54
LIMA1-215ENST00000552823 G3V2T6 193 aa5.42□□□□□ -1.54
LIMA1-215ENST00000552823 H7BY64 318 aa5.42□□□□□ -1.54
LIMA1-215ENST00000552823 ZNF197O14709 1029 aa5.42□□□□□ -1.54
LIMA1-215ENST00000552823 LIN7AO14910 233 aaPredicted RBP5.42□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms