RNA–Protein interactions for RNA: ENST00000552440.5

USP44-208, Transcript of ubiquitin specific peptidase 44, human

TSL 5 BASIC

Gene USP44, Length 1,818 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP44-208	ENST00000552440	OSCP1	Q8WVF1	389 aa		4.05	□□□□□ -1.76
USP44-208	ENST00000552440	FCGR1B	Q92637	280 aa		4.05	□□□□□ -1.76
USP44-208	ENST00000552440	CDKL2	Q92772	493 aa		4.05	□□□□□ -1.76
USP44-208	ENST00000552440	SGK3	Q96BR1	496 aa		4.05	□□□□□ -1.76
USP44-208	ENST00000552440	ULK4	Q96C45	1275 aa		4.05	□□□□□ -1.76
USP44-208	ENST00000552440	SENP8	Q96LD8	212 aa		4.05	□□□□□ -1.76
USP44-208	ENST00000552440	OSBPL9	Q96SU4	736 aa		4.05	□□□□□ -1.76
USP44-208	ENST00000552440	ZNF559	Q9BR84	538 aa		4.05	□□□□□ -1.76
USP44-208	ENST00000552440	ALG12	Q9BV10	488 aa		4.05	□□□□□ -1.76
USP44-208	ENST00000552440	NMNAT2	Q9BZQ4	307 aa		4.05	□□□□□ -1.76
USP44-208	ENST00000552440	TKTL2	Q9H0I9	626 aa		4.05	□□□□□ -1.76
USP44-208	ENST00000552440	VCX3B	Q9H321	246 aa		4.05	□□□□□ -1.76
USP44-208	ENST00000552440	CPNE5	Q9HCH3	593 aa		4.05	□□□□□ -1.76
USP44-208	ENST00000552440	TREM1	Q9NP99	234 aa		4.05	□□□□□ -1.76
USP44-208	ENST00000552440	SDHAF3	Q9NRP4	125 aa		4.05	□□□□□ -1.76
USP44-208	ENST00000552440	FAM207A	Q9NSI2	230 aa	Predicted RBP	4.05	□□□□□ -1.76
USP44-208	ENST00000552440	TAS2R14	Q9NYV8	317 aa		4.05	□□□□□ -1.76
USP44-208	ENST00000552440	CHMP2B	Q9UQN3	213 aa		4.05	□□□□□ -1.76
USP44-208	ENST00000552440	PKP3	Q9Y446	797 aa		4.05	□□□□□ -1.76
USP44-208	ENST00000552440	MAST3	O60307	1309 aa		4.04	□□□□□ -1.76
USP44-208	ENST00000552440	ZNF541	Q9H0D2	1346 aa		4.04	□□□□□ -1.76
USP44-208	ENST00000552440	PRAMEF33	A0A0G2JMD5	474 aa		4.04	□□□□□ -1.76
USP44-208	ENST00000552440		A0A0U1RQV5	110 aa		4.04	□□□□□ -1.76
USP44-208	ENST00000552440	OR6C75	A6NL08	312 aa		4.04	□□□□□ -1.76
USP44-208	ENST00000552440		F5H697	171 aa		4.04	□□□□□ -1.76
USP44-208	ENST00000552440		H3BMM5	538 aa		4.04	□□□□□ -1.76
USP44-208	ENST00000552440	NDUFS4	O43181	175 aa		4.04	□□□□□ -1.76
USP44-208	ENST00000552440	ZNF208	O43345	1280 aa		4.04	□□□□□ -1.76
USP44-208	ENST00000552440	ECE2	O60344	883 aa		4.04	□□□□□ -1.76
USP44-208	ENST00000552440	PRAMEF10	O60809	474 aa		4.04	□□□□□ -1.76
USP44-208	ENST00000552440	PRAMEF11	O60813	436 aa		4.04	□□□□□ -1.76
USP44-208	ENST00000552440	ZFPL1	O95159	310 aa		4.04	□□□□□ -1.76
USP44-208	ENST00000552440	KLHL2	O95198	593 aa		4.04	□□□□□ -1.76
USP44-208	ENST00000552440	OR6A2	O95222	327 aa		4.04	□□□□□ -1.76
USP44-208	ENST00000552440	CBX6	O95503	412 aa		4.04	□□□□□ -1.76
USP44-208	ENST00000552440	MT-CYB	P00156	380 aa	Predicted RBP	4.04	□□□□□ -1.76
USP44-208	ENST00000552440	ZNF24	P17028	368 aa		4.04	□□□□□ -1.76
USP44-208	ENST00000552440	HOXB9	P17482	250 aa	Predicted RBP	4.04	□□□□□ -1.76
USP44-208	ENST00000552440	TYK2	P29597	1187 aa		4.04	□□□□□ -1.76
USP44-208	ENST00000552440	CSTF2	P33240	577 aa	Known RBP eCLIP	4.04	□□□□□ -1.76
USP44-208	ENST00000552440	ATP5C1	P36542	298 aa	Known RBP	4.04	□□□□□ -1.76
USP44-208	ENST00000552440	ME1	P48163	572 aa		4.04	□□□□□ -1.76
USP44-208	ENST00000552440	CACNA2D1	P54289	1103 aa		4.04	□□□□□ -1.76
USP44-208	ENST00000552440	MYL6	P60660	151 aa		4.04	□□□□□ -1.76
USP44-208	ENST00000552440	MRPS34	P82930	218 aa	Known RBP	4.04	□□□□□ -1.76
USP44-208	ENST00000552440	SARNP	P82979	210 aa	Known RBP	4.04	□□□□□ -1.76
USP44-208	ENST00000552440	SLC25A3	Q00325	362 aa		4.04	□□□□□ -1.76
USP44-208	ENST00000552440	DRP2	Q13474	957 aa		4.04	□□□□□ -1.76
USP44-208	ENST00000552440	NCF4	Q15080	339 aa		4.04	□□□□□ -1.76
USP44-208	ENST00000552440	SSX2	Q16385	188 aa		4.04	□□□□□ -1.76
USP44-208	ENST00000552440	FAM83E	Q2M2I3	478 aa		4.04	□□□□□ -1.76
USP44-208	ENST00000552440	ANKRD55	Q3KP44	614 aa		4.04	□□□□□ -1.76
USP44-208	ENST00000552440	CD300E	Q496F6	205 aa	Predicted RBP	4.04	□□□□□ -1.76
USP44-208	ENST00000552440	FAM98B	Q52LJ0	330 aa	Known RBP	4.04	□□□□□ -1.76
USP44-208	ENST00000552440	C6orf141	Q5SZD1	244 aa		4.04	□□□□□ -1.76
USP44-208	ENST00000552440	AADACL2	Q6P093	401 aa		4.04	□□□□□ -1.76
USP44-208	ENST00000552440	CYB5D1	Q6P9G0	228 aa		4.04	□□□□□ -1.76
USP44-208	ENST00000552440	ENPP7	Q6UWV6	458 aa		4.04	□□□□□ -1.76
USP44-208	ENST00000552440	SLC39A5	Q6ZMH5	540 aa		4.04	□□□□□ -1.76
USP44-208	ENST00000552440	BZW1	Q7L1Q6	419 aa	Known RBP	4.04	□□□□□ -1.76
USP44-208	ENST00000552440	TECPR1	Q7Z6L1	1165 aa		4.04	□□□□□ -1.76
USP44-208	ENST00000552440	TRIM74	Q86UV6	250 aa		4.04	□□□□□ -1.76
USP44-208	ENST00000552440	TRIM73	Q86UV7	250 aa		4.04	□□□□□ -1.76
USP44-208	ENST00000552440	ADGRG5	Q8IZF4	528 aa		4.04	□□□□□ -1.76
USP44-208	ENST00000552440	CCDC63	Q8NA47	563 aa		4.04	□□□□□ -1.76
USP44-208	ENST00000552440	ATG4A	Q8WYN0	398 aa		4.04	□□□□□ -1.76
USP44-208	ENST00000552440	VOPP1	Q96AW1	172 aa		4.04	□□□□□ -1.76
USP44-208	ENST00000552440	RHBDF1	Q96CC6	855 aa		4.04	□□□□□ -1.76
USP44-208	ENST00000552440	MSI2	Q96DH6	328 aa	Known RBP	4.04	□□□□□ -1.76
USP44-208	ENST00000552440	WDYHV1	Q96HA8	205 aa		4.04	□□□□□ -1.76
USP44-208	ENST00000552440	C4orf36	Q96KX1	117 aa		4.04	□□□□□ -1.76
USP44-208	ENST00000552440	SPATA33	Q96N06	139 aa		4.04	□□□□□ -1.76
USP44-208	ENST00000552440	OLFM1	Q99784	485 aa		4.04	□□□□□ -1.76
USP44-208	ENST00000552440	CITED1	Q99966	193 aa		4.04	□□□□□ -1.76
USP44-208	ENST00000552440	SF3B5	Q9BWJ5	86 aa	Known RBP	4.04	□□□□□ -1.76
USP44-208	ENST00000552440	CADM1	Q9BY67	442 aa	Known RBP	4.04	□□□□□ -1.76
USP44-208	ENST00000552440	SLC26A1	Q9H2B4	701 aa		4.04	□□□□□ -1.76
USP44-208	ENST00000552440	YAE1D1	Q9NRH1	226 aa		4.04	□□□□□ -1.76
USP44-208	ENST00000552440	PIGV	Q9NUD9	493 aa		4.04	□□□□□ -1.76
USP44-208	ENST00000552440	TMEM248	Q9NWD8	314 aa		4.04	□□□□□ -1.76
USP44-208	ENST00000552440	GTSE1	Q9NYZ3	720 aa		4.04	□□□□□ -1.76
USP44-208	ENST00000552440	NLK	Q9UBE8	527 aa		4.04	□□□□□ -1.76
USP44-208	ENST00000552440	PEF1	Q9UBV8	284 aa	Known RBP	4.04	□□□□□ -1.76
USP44-208	ENST00000552440	SERGEF	Q9UGK8	458 aa		4.04	□□□□□ -1.76
USP44-208	ENST00000552440	IL20RA	Q9UHF4	553 aa		4.04	□□□□□ -1.76
USP44-208	ENST00000552440	CRLS1	Q9UJA2	301 aa		4.04	□□□□□ -1.76
USP44-208	ENST00000552440	GAB2	Q9UQC2	676 aa		4.04	□□□□□ -1.76
USP44-208	ENST00000552440	MRPS33	Q9Y291	106 aa	Known RBP	4.04	□□□□□ -1.76
USP44-208	ENST00000552440	ARHGEF40	Q8TER5	1519 aa		4.04	□□□□□ -1.76
USP44-208	ENST00000552440	PFAS	O15067	1338 aa		4.03	□□□□□ -1.76
USP44-208	ENST00000552440	SF3B1	O75533	1304 aa	Known RBP eCLIP	4.03	□□□□□ -1.76
USP44-208	ENST00000552440	SPATA31A1	Q5TZJ5	1347 aa		4.03	□□□□□ -1.76
USP44-208	ENST00000552440	SPATA31A5	Q5VU36	1347 aa		4.03	□□□□□ -1.76
USP44-208	ENST00000552440	SPATA31A7	Q8IWB4	1347 aa		4.03	□□□□□ -1.76
USP44-208	ENST00000552440	FAM240B	A0A1B0GVZ2	78 aa		4.03	□□□□□ -1.76
USP44-208	ENST00000552440	C1orf226	A1L170	272 aa		4.03	□□□□□ -1.76
USP44-208	ENST00000552440	PIPSL	A2A3N6	862 aa		4.03	□□□□□ -1.76
USP44-208	ENST00000552440	ARHGEF35	A5YM69	484 aa		4.03	□□□□□ -1.76
USP44-208	ENST00000552440	TCP11X1	B4DZS4	312 aa		4.03	□□□□□ -1.76
USP44-208	ENST00000552440	SUPT3H	B4E1H0	165 aa		4.03	□□□□□ -1.76

Retrieved 100 of 20,778 RNA–protein pairs in 82.3 ms