RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 MINDY1Q8N5J2 469 aa15.25■□□□□ 0.03
CUX1-211ENST00000546411 ZUFSPQ96AP4 578 aa15.25■□□□□ 0.03
CUX1-211ENST00000546411 MAGEB10Q96LZ2 347 aaPredicted RBP15.25■□□□□ 0.03
CUX1-211ENST00000546411 PKP4Q99569 1192 aa15.25■□□□□ 0.03
CUX1-211ENST00000546411 C8orf4Q9NR00 106 aa15.25■□□□□ 0.03
CUX1-211ENST00000546411 CDC14AQ9UNH5 594 aa15.25■□□□□ 0.03
CUX1-211ENST00000546411 KIAA1217Q5T5P2 1943 aa15.25■□□□□ 0.03
CUX1-211ENST00000546411 SSC5DA1L4H1 1573 aa15.25■□□□□ 0.03
CUX1-211ENST00000546411 FAM25AB3EWG3 89 aa15.25■□□□□ 0.03
CUX1-211ENST00000546411 FAM25CB3EWG5 89 aa15.25■□□□□ 0.03
CUX1-211ENST00000546411 FAM25GB3EWG6 89 aa15.25■□□□□ 0.03
CUX1-211ENST00000546411 PSMD11O00231 422 aa15.25■□□□□ 0.03
CUX1-211ENST00000546411 FBP2O00757 339 aa15.25■□□□□ 0.03
CUX1-211ENST00000546411 SERPINB7O75635 380 aa15.25■□□□□ 0.03
CUX1-211ENST00000546411 PABPC4LP0CB38 370 aaKnown RBP15.25■□□□□ 0.03
CUX1-211ENST00000546411 GPX3P22352 226 aa15.25■□□□□ 0.03
CUX1-211ENST00000546411 ACRV1P26436 265 aa15.25■□□□□ 0.03
CUX1-211ENST00000546411 HOXD9P28356 352 aaPredicted RBP15.25■□□□□ 0.03
CUX1-211ENST00000546411 FEN1P39748 380 aaKnown RBP15.25■□□□□ 0.03
CUX1-211ENST00000546411 UGT2B15P54855 530 aa15.25■□□□□ 0.03
CUX1-211ENST00000546411 ZBED5Q49AG3 693 aa15.25■□□□□ 0.03
CUX1-211ENST00000546411 RSBN1Q5VWQ0 802 aaPredicted RBP15.25■□□□□ 0.03
CUX1-211ENST00000546411 OR2T5Q6IEZ7 315 aa15.25■□□□□ 0.03
CUX1-211ENST00000546411 ENPP6Q6UWR7 440 aa15.25■□□□□ 0.03
CUX1-211ENST00000546411 LILRA2Q8N149 483 aa15.25■□□□□ 0.03
CUX1-211ENST00000546411 OR2T29Q8NH02 315 aa15.25■□□□□ 0.03
CUX1-211ENST00000546411 WDR36Q8NI36 951 aaKnown RBP15.25■□□□□ 0.03
CUX1-211ENST00000546411 ATOH8Q96SQ7 321 aa15.25■□□□□ 0.03
CUX1-211ENST00000546411 LINC00597Q9H2U6 94 aa15.25■□□□□ 0.03
CUX1-211ENST00000546411 SEMA3GQ9NS98 782 aa15.25■□□□□ 0.03
CUX1-211ENST00000546411 ENOPH1Q9UHY7 261 aa15.25■□□□□ 0.03
CUX1-211ENST00000546411 MAPRE3Q9UPY8 281 aa15.25■□□□□ 0.03
CUX1-211ENST00000546411 DOCK5Q9H7D0 1870 aa15.25■□□□□ 0.03
CUX1-211ENST00000546411 A0A1W2PRB8 838 aa15.25■□□□□ 0.03
CUX1-211ENST00000546411 KRT87PA6NCN2 255 aa15.25■□□□□ 0.03
CUX1-211ENST00000546411 UBFD1O14562 309 aaKnown RBP15.25■□□□□ 0.03
CUX1-211ENST00000546411 ENTPD1P49961 510 aa15.25■□□□□ 0.03
CUX1-211ENST00000546411 AP1S2P56377 157 aa15.25■□□□□ 0.03
CUX1-211ENST00000546411 ZXDBP98169 803 aa15.25■□□□□ 0.03
CUX1-211ENST00000546411 FOXM1Q08050 763 aa15.25■□□□□ 0.03
CUX1-211ENST00000546411 UBXN10Q96LJ8 280 aa15.25■□□□□ 0.03
CUX1-211ENST00000546411 COPS4Q9BT78 406 aa15.25■□□□□ 0.03
CUX1-211ENST00000546411 PLAC1Q9HBJ0 212 aa15.25■□□□□ 0.03
CUX1-211ENST00000546411 SLC9A8Q9Y2E8 581 aa15.25■□□□□ 0.03
CUX1-211ENST00000546411 POLR2AP24928 1970 aaKnown RBP15.24■□□□□ 0.03
CUX1-211ENST00000546411 NPIPB15A6NHN6 443 aaPredicted RBP15.24■□□□□ 0.03
CUX1-211ENST00000546411 GSTM5P46439 218 aa15.24■□□□□ 0.03
CUX1-211ENST00000546411 ATP4BP51164 291 aa15.24■□□□□ 0.03
CUX1-211ENST00000546411 LRP8Q14114 963 aa15.24■□□□□ 0.03
CUX1-211ENST00000546411 DSC3Q14574 896 aa15.24■□□□□ 0.03
CUX1-211ENST00000546411 PDZK1Q5T2W1 519 aa15.24■□□□□ 0.03
CUX1-211ENST00000546411 KANK2Q63ZY3 851 aa15.24■□□□□ 0.03
CUX1-211ENST00000546411 OR52E8Q6IFG1 317 aa15.24■□□□□ 0.03
CUX1-211ENST00000546411 NOXRED1Q6NXP6 359 aa15.24■□□□□ 0.03
CUX1-211ENST00000546411 AMZ2Q86W34 360 aa15.24■□□□□ 0.03
CUX1-211ENST00000546411 SVOPLQ8N434 492 aa15.24■□□□□ 0.03
CUX1-211ENST00000546411 CAMKK1Q8N5S9 505 aa15.24■□□□□ 0.03
CUX1-211ENST00000546411 NUDT8Q8WV74 236 aa15.24■□□□□ 0.03
CUX1-211ENST00000546411 SLC9A6Q92581 669 aa15.24■□□□□ 0.03
CUX1-211ENST00000546411 ARMC5Q96C12 935 aa15.24■□□□□ 0.03
CUX1-211ENST00000546411 HCFC1R1Q9NWW0 138 aa15.24■□□□□ 0.03
CUX1-211ENST00000546411 RHCGQ9UBD6 479 aa15.24■□□□□ 0.03
CUX1-211ENST00000546411 EP400Q96L91 3159 aa15.24■□□□□ 0.03
CUX1-211ENST00000546411 NFATC1O95644 943 aa15.24■□□□□ 0.03
CUX1-211ENST00000546411 HOXD8P13378 290 aaPredicted RBP15.24■□□□□ 0.03
CUX1-211ENST00000546411 JAK1P23458 1154 aa15.24■□□□□ 0.03
CUX1-211ENST00000546411 ALDH3A2P51648 485 aa15.24■□□□□ 0.03
CUX1-211ENST00000546411 TMEM115Q12893 351 aaPredicted RBP15.24■□□□□ 0.03
CUX1-211ENST00000546411 NPTX1Q15818 432 aa15.24■□□□□ 0.03
CUX1-211ENST00000546411 BRAT1Q6PJG6 821 aa15.24■□□□□ 0.03
CUX1-211ENST00000546411 FAM129CQ86XR2 697 aa15.24■□□□□ 0.03
CUX1-211ENST00000546411 ART5Q96L15 291 aa15.24■□□□□ 0.03
CUX1-211ENST00000546411 C12orf66Q96MD2 445 aa15.24■□□□□ 0.03
CUX1-211ENST00000546411 SLC35A5Q9BS91 424 aa15.24■□□□□ 0.03
CUX1-211ENST00000546411 PALMDQ9NP74 551 aa15.24■□□□□ 0.03
CUX1-211ENST00000546411 TLR9Q9NR96 1032 aa15.24■□□□□ 0.03
CUX1-211ENST00000546411 TRNAU1APQ9NX07 287 aaKnown RBP15.24■□□□□ 0.03
CUX1-211ENST00000546411 IL36AQ9UHA7 158 aa15.24■□□□□ 0.03
CUX1-211ENST00000546411 TRIP11Q15643 1979 aa15.24■□□□□ 0.03
CUX1-211ENST00000546411 LOC100130705A0A1B0GUX0 176 aa15.24■□□□□ 0.03
CUX1-211ENST00000546411 PIPSLA2A3N6 862 aa15.24■□□□□ 0.03
CUX1-211ENST00000546411 TFPTP0C1Z6 253 aa15.24■□□□□ 0.03
CUX1-211ENST00000546411 RFC2P35250 354 aa15.24■□□□□ 0.03
CUX1-211ENST00000546411 HNMTP50135 292 aa15.24■□□□□ 0.03
CUX1-211ENST00000546411 MXD1Q05195 221 aa15.24■□□□□ 0.03
CUX1-211ENST00000546411 STON2Q8WXE9 905 aa15.24■□□□□ 0.03
CUX1-211ENST00000546411 IRF7Q92985 503 aa15.24■□□□□ 0.03
CUX1-211ENST00000546411 ZNF607Q96SK3 696 aa15.24■□□□□ 0.03
CUX1-211ENST00000546411 TAC3Q9UHF0 121 aa15.24■□□□□ 0.03
CUX1-211ENST00000546411 TTC34A8MYJ7 566 aa15.23■□□□□ 0.03
CUX1-211ENST00000546411 TFECO14948 347 aaPredicted RBP15.23■□□□□ 0.03
CUX1-211ENST00000546411 B4GAT1O43505 415 aa15.23■□□□□ 0.03
CUX1-211ENST00000546411 AZGP1P25311 298 aaKnown RBP15.23■□□□□ 0.03
CUX1-211ENST00000546411 TAS2R50P59544 299 aa15.23■□□□□ 0.03
CUX1-211ENST00000546411 ADAM17P78536 824 aa15.23■□□□□ 0.03
CUX1-211ENST00000546411 IER5LQ5T953 404 aa15.23■□□□□ 0.03
CUX1-211ENST00000546411 TMEM207Q6UWW9 146 aa15.23■□□□□ 0.03
CUX1-211ENST00000546411 RNF175Q8N4F7 328 aa15.23■□□□□ 0.03
CUX1-211ENST00000546411 PACRGLQ8N7B6 248 aa15.23■□□□□ 0.03
CUX1-211ENST00000546411 UBASH3BQ8TF42 649 aa15.23■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms