RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 ADHFE1Q8IWW8 467 aa9.58□□□□□ -0.88
SS18-205ENST00000542420 PJA1Q8NG27 643 aa9.58□□□□□ -0.88
SS18-205ENST00000542420 C11orf24Q96F05 449 aaPredicted RBP9.58□□□□□ -0.88
SS18-205ENST00000542420 PPP1R16AQ96I34 528 aa9.58□□□□□ -0.88
SS18-205ENST00000542420 P2RY13Q9BPV8 354 aa9.58□□□□□ -0.88
SS18-205ENST00000542420 TUBA1CQ9BQE3 449 aa9.58□□□□□ -0.88
SS18-205ENST00000542420 MTIF3Q9H2K0 278 aaKnown RBP9.58□□□□□ -0.88
SS18-205ENST00000542420 INVSQ9Y283 1065 aa9.58□□□□□ -0.88
SS18-205ENST00000542420 UPK1AO00322 258 aa9.57□□□□□ -0.88
SS18-205ENST00000542420 VILLO15195 856 aa9.57□□□□□ -0.88
SS18-205ENST00000542420 CCNDBP1O95273 360 aa9.57□□□□□ -0.88
SS18-205ENST00000542420 NFATC1O95644 943 aa9.57□□□□□ -0.88
SS18-205ENST00000542420 CYP17A1P05093 508 aa9.57□□□□□ -0.88
SS18-205ENST00000542420 ABCB1P08183 1280 aaPredicted RBP9.57□□□□□ -0.88
SS18-205ENST00000542420 ELFN1P0C7U0 828 aa9.57□□□□□ -0.88
SS18-205ENST00000542420 PTPN6P29350 595 aa9.57□□□□□ -0.88
SS18-205ENST00000542420 RXRGP48443 463 aa9.57□□□□□ -0.88
SS18-205ENST00000542420 MTPNP58546 118 aa9.57□□□□□ -0.88
SS18-205ENST00000542420 IRF8Q02556 426 aa9.57□□□□□ -0.88
SS18-205ENST00000542420 CHIT1Q13231 466 aa9.57□□□□□ -0.88
SS18-205ENST00000542420 IL18R1Q13478 541 aa9.57□□□□□ -0.88
SS18-205ENST00000542420 LAPTM5Q13571 262 aa9.57□□□□□ -0.88
SS18-205ENST00000542420 SELPLGQ14242 412 aa9.57□□□□□ -0.88
SS18-205ENST00000542420 CBX2Q14781 532 aaPredicted RBP9.57□□□□□ -0.88
SS18-205ENST00000542420 CPSF6Q16630 551 aaKnown RBP eCLIP9.57□□□□□ -0.88
SS18-205ENST00000542420 DUOXA1Q1HG43 343 aa9.57□□□□□ -0.88
SS18-205ENST00000542420 TMEM52BQ4KMG9 183 aa9.57□□□□□ -0.88
SS18-205ENST00000542420 TMEM240Q5SV17 173 aa9.57□□□□□ -0.88
SS18-205ENST00000542420 TTC23Q5W5X9 447 aa9.57□□□□□ -0.88
SS18-205ENST00000542420 NOXRED1Q6NXP6 359 aa9.57□□□□□ -0.88
SS18-205ENST00000542420 THOC6Q86W42 341 aaKnown RBP9.57□□□□□ -0.88
SS18-205ENST00000542420 ETFBKMTQ8IXQ9 262 aa9.57□□□□□ -0.88
SS18-205ENST00000542420 METTL25Q8N6Q8 603 aa9.57□□□□□ -0.88
SS18-205ENST00000542420 TRIML2Q8N7C3 387 aa9.57□□□□□ -0.88
SS18-205ENST00000542420 FAM47BQ8NA70 645 aa9.57□□□□□ -0.88
SS18-205ENST00000542420 RAB7BQ96AH8 199 aa9.57□□□□□ -0.88
SS18-205ENST00000542420 RNF145Q96MT1 663 aa9.57□□□□□ -0.88
SS18-205ENST00000542420 THUMPD3Q9BV44 507 aaKnown RBP9.57□□□□□ -0.88
SS18-205ENST00000542420 RIOK2Q9BVS4 552 aaKnown RBP9.57□□□□□ -0.88
SS18-205ENST00000542420 GABARAPL1Q9H0R8 117 aa9.57□□□□□ -0.88
SS18-205ENST00000542420 ITM2CQ9NQX7 267 aa9.57□□□□□ -0.88
SS18-205ENST00000542420 FARSBQ9NSD9 589 aaKnown RBP9.57□□□□□ -0.88
SS18-205ENST00000542420 WBP1LQ9NX94 342 aa9.57□□□□□ -0.88
SS18-205ENST00000542420 SLC25A37Q9NYZ2 338 aa9.57□□□□□ -0.88
SS18-205ENST00000542420 VPS29Q9UBQ0 182 aa9.57□□□□□ -0.88
SS18-205ENST00000542420 BTNL2Q9UIR0 455 aa9.57□□□□□ -0.88
SS18-205ENST00000542420 PAIP2BQ9ULR5 123 aaKnown RBP9.57□□□□□ -0.88
SS18-205ENST00000542420 GPR34Q9UPC5 381 aa9.57□□□□□ -0.88
SS18-205ENST00000542420 SAMD4AQ9UPU9 718 aaKnown RBP9.57□□□□□ -0.88
SS18-205ENST00000542420 FADS3Q9Y5Q0 445 aa9.57□□□□□ -0.88
SS18-205ENST00000542420 ATG2AQ2TAZ0 1938 aa9.57□□□□□ -0.88
SS18-205ENST00000542420 PCM1Q15154 2024 aa9.57□□□□□ -0.88
SS18-205ENST00000542420 ARHGEF33A8MVX0 844 aa9.57□□□□□ -0.88
SS18-205ENST00000542420 FADS2P1A8MWK0 482 aa9.57□□□□□ -0.88
SS18-205ENST00000542420 TTC34A8MYJ7 566 aa9.57□□□□□ -0.88
SS18-205ENST00000542420 EVPLLA8MZ36 301 aa9.57□□□□□ -0.88
SS18-205ENST00000542420 FOXE1O00358 373 aaPredicted RBP9.57□□□□□ -0.88
SS18-205ENST00000542420 EI24O14681 340 aa9.57□□□□□ -0.88
SS18-205ENST00000542420 VEGFDO43915 354 aa9.57□□□□□ -0.88
SS18-205ENST00000542420 PGM3O95394 542 aa9.57□□□□□ -0.88
SS18-205ENST00000542420 ALBP02768 609 aa9.57□□□□□ -0.88
SS18-205ENST00000542420 CTSLP07711 333 aa9.57□□□□□ -0.88
SS18-205ENST00000542420 NCK1P16333 377 aa9.57□□□□□ -0.88
SS18-205ENST00000542420 MAGEA2P43356 314 aa9.57□□□□□ -0.88
SS18-205ENST00000542420 KIR3DL1P43629 444 aa9.57□□□□□ -0.88
SS18-205ENST00000542420 CDK9P50750 372 aaKnown RBP9.57□□□□□ -0.88
SS18-205ENST00000542420 ARSFP54793 590 aa9.57□□□□□ -0.88
SS18-205ENST00000542420 ESRRGP62508 458 aa9.57□□□□□ -0.88
SS18-205ENST00000542420 YBX1P67809 324 aaKnown RBP9.57□□□□□ -0.88
SS18-205ENST00000542420 ZXDCQ2QGD7 858 aaPredicted RBP9.57□□□□□ -0.88
SS18-205ENST00000542420 CYBRD1Q53TN4 286 aa9.57□□□□□ -0.88
SS18-205ENST00000542420 MFSD4BQ5TF39 518 aa9.57□□□□□ -0.88
SS18-205ENST00000542420 ANXA8L1Q5VT79 327 aa9.57□□□□□ -0.88
SS18-205ENST00000542420 GALNT18Q6P9A2 607 aa9.57□□□□□ -0.88
SS18-205ENST00000542420 TTC33Q6PID6 262 aaPredicted RBP9.57□□□□□ -0.88
SS18-205ENST00000542420 AGTRAPQ6RW13 159 aa9.57□□□□□ -0.88
SS18-205ENST00000542420 MBOAT1Q6ZNC8 495 aa9.57□□□□□ -0.88
SS18-205ENST00000542420 Q6ZVL8 140 aa9.57□□□□□ -0.88
SS18-205ENST00000542420 GPR155Q7Z3F1 870 aa9.57□□□□□ -0.88
SS18-205ENST00000542420 VRK3Q8IV63 474 aa9.57□□□□□ -0.88
SS18-205ENST00000542420 ZCCHC7Q8N3Z6 543 aaKnown RBP9.57□□□□□ -0.88
SS18-205ENST00000542420 OR5K1Q8NHB7 308 aa9.57□□□□□ -0.88
SS18-205ENST00000542420 OR8D1Q8WZ84 308 aa9.57□□□□□ -0.88
SS18-205ENST00000542420 AP2M1Q96CW1 435 aa9.57□□□□□ -0.88
SS18-205ENST00000542420 FAM120BQ96EK7 910 aaKnown RBP9.57□□□□□ -0.88
SS18-205ENST00000542420 SLC47A1Q96FL8 570 aa9.57□□□□□ -0.88
SS18-205ENST00000542420 RBM4BQ9BQ04 359 aaKnown RBP9.57□□□□□ -0.88
SS18-205ENST00000542420 EFCAB11Q9BUY7 163 aa9.57□□□□□ -0.88
SS18-205ENST00000542420 RBM4Q9BWF3 364 aaKnown RBP9.57□□□□□ -0.88
SS18-205ENST00000542420 LINC00597Q9H2U6 94 aa9.57□□□□□ -0.88
SS18-205ENST00000542420 DPEP2Q9H4A9 486 aa9.57□□□□□ -0.88
SS18-205ENST00000542420 ZFP14Q9HCL3 533 aa9.57□□□□□ -0.88
SS18-205ENST00000542420 STOX2Q9P2F5 926 aaPredicted RBP9.57□□□□□ -0.88
SS18-205ENST00000542420 IFT80Q9P2H3 777 aaPredicted RBP9.57□□□□□ -0.88
SS18-205ENST00000542420 ADGRE2Q9UHX3 823 aa9.57□□□□□ -0.88
SS18-205ENST00000542420 SLC22A14Q9Y267 594 aa9.57□□□□□ -0.88
SS18-205ENST00000542420 A8MX80 341 aa9.56□□□□□ -0.88
SS18-205ENST00000542420 TLL1O43897 1013 aa9.56□□□□□ -0.88
SS18-205ENST00000542420 CREG1O75629 220 aa9.56□□□□□ -0.88
SS18-205ENST00000542420 ALPLP05186 524 aa9.56□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms