RNA–Protein interactions for RNA: ENST00000540428.1

CBX3P4-202, Transcript of chromobox 3 pseudogene 4, humanhuman

TSL 2 BASIC

Gene CBX3P4, Length 423 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3P4-202ENST00000540428 PRPF4O43172 522 aaKnown RBP eCLIP11.45□□□□□ -0.58
CBX3P4-202ENST00000540428 HNRNPRO43390 633 aaKnown RBP11.45□□□□□ -0.58
CBX3P4-202ENST00000540428 NDUFS3O75489 264 aa11.45□□□□□ -0.58
CBX3P4-202ENST00000540428 KLHL18O94889 574 aa11.45□□□□□ -0.58
CBX3P4-202ENST00000540428 APRTP07741 180 aa11.45□□□□□ -0.58
CBX3P4-202ENST00000540428 PSMB5P28074 263 aa11.45□□□□□ -0.58
CBX3P4-202ENST00000540428 TNFRSF8P28908 595 aa11.45□□□□□ -0.58
CBX3P4-202ENST00000540428 ATP5DP30049 168 aa11.45□□□□□ -0.58
CBX3P4-202ENST00000540428 CMPK1P30085 196 aa11.45□□□□□ -0.58
CBX3P4-202ENST00000540428 ZNF75DP51815 510 aa11.45□□□□□ -0.58
CBX3P4-202ENST00000540428 PRTGQ2VWP7 1150 aa11.45□□□□□ -0.58
CBX3P4-202ENST00000540428 ZNF324BQ6AW86 544 aaPredicted RBP11.45□□□□□ -0.58
CBX3P4-202ENST00000540428 LINC00696Q6ZRV3 163 aa11.45□□□□□ -0.58
CBX3P4-202ENST00000540428 NDUFAF7Q7L592 441 aa11.45□□□□□ -0.58
CBX3P4-202ENST00000540428 LDB1Q86U70 411 aaPredicted RBP11.45□□□□□ -0.58
CBX3P4-202ENST00000540428 SKA2Q8WVK7 121 aaPredicted RBP11.45□□□□□ -0.58
CBX3P4-202ENST00000540428 MIPEPQ99797 713 aa11.45□□□□□ -0.58
CBX3P4-202ENST00000540428 ZFYVE21Q9BQ24 234 aa11.45□□□□□ -0.58
CBX3P4-202ENST00000540428 IL22Q9GZX6 179 aa11.45□□□□□ -0.58
CBX3P4-202ENST00000540428 ZNF160Q9HCG1 818 aa11.45□□□□□ -0.58
CBX3P4-202ENST00000540428 EIF2B3Q9NR50 452 aaKnown RBP11.45□□□□□ -0.58
CBX3P4-202ENST00000540428 CHRAC1Q9NRG0 131 aa11.45□□□□□ -0.58
CBX3P4-202ENST00000540428 TREX1Q9NSU2 369 aa11.45□□□□□ -0.58
CBX3P4-202ENST00000540428 C14orf105Q9NVL8 296 aa11.45□□□□□ -0.58
CBX3P4-202ENST00000540428 CDC14AQ9UNH5 594 aa11.45□□□□□ -0.58
CBX3P4-202ENST00000540428 NFS1Q9Y697 457 aa11.45□□□□□ -0.58
CBX3P4-202ENST00000540428 CCDC88CQ9P219 2028 aa11.45□□□□□ -0.58
CBX3P4-202ENST00000540428 SNRNP200O75643 2136 aaKnown RBP11.44□□□□□ -0.58
CBX3P4-202ENST00000540428 LOC105369274A0A096LPK9 316 aa11.44□□□□□ -0.58
CBX3P4-202ENST00000540428 TRAV17A0A0B4J275 112 aa11.44□□□□□ -0.58
CBX3P4-202ENST00000540428 LOC102723532A0A0G2JNH3 316 aa11.44□□□□□ -0.58
CBX3P4-202ENST00000540428 A0A1W2PPV9 198 aa11.44□□□□□ -0.58
CBX3P4-202ENST00000540428 H3BMM5 538 aa11.44□□□□□ -0.58
CBX3P4-202ENST00000540428 VPS26AO75436 327 aa11.44□□□□□ -0.58
CBX3P4-202ENST00000540428 JRKO75564 520 aa11.44□□□□□ -0.58
CBX3P4-202ENST00000540428 MED26O95402 600 aa11.44□□□□□ -0.58
CBX3P4-202ENST00000540428 MATN4O95460 622 aa11.44□□□□□ -0.58
CBX3P4-202ENST00000540428 EIF2S1P05198 315 aaKnown RBP11.44□□□□□ -0.58
CBX3P4-202ENST00000540428 SERPINA7P05543 415 aa11.44□□□□□ -0.58
CBX3P4-202ENST00000540428 PRR35P0CG20 571 aa11.44□□□□□ -0.58
CBX3P4-202ENST00000540428 ERVK-10P10266 1014 aa11.44□□□□□ -0.58
CBX3P4-202ENST00000540428 ERGP11308 486 aa11.44□□□□□ -0.58
CBX3P4-202ENST00000540428 COX6A1P12074 109 aa11.44□□□□□ -0.58
CBX3P4-202ENST00000540428 FBLP22087 321 aaKnown RBP11.44□□□□□ -0.58
CBX3P4-202ENST00000540428 SOX11P35716 441 aa11.44□□□□□ -0.58
CBX3P4-202ENST00000540428 BDKRB1P46663 353 aa11.44□□□□□ -0.58
CBX3P4-202ENST00000540428 TNFSF10P50591 281 aa11.44□□□□□ -0.58
CBX3P4-202ENST00000540428 AP2B1P63010 937 aa11.44□□□□□ -0.58
CBX3P4-202ENST00000540428 ARG2P78540 354 aa11.44□□□□□ -0.58
CBX3P4-202ENST00000540428 DSG2Q14126 1118 aa11.44□□□□□ -0.58
CBX3P4-202ENST00000540428 GBX1Q14549 363 aa11.44□□□□□ -0.58
CBX3P4-202ENST00000540428 ARHGAP19Q14CB8 494 aa11.44□□□□□ -0.58
CBX3P4-202ENST00000540428 CCSMST1Q4G0I0 132 aa11.44□□□□□ -0.58
CBX3P4-202ENST00000540428 FBXO42Q6P3S6 717 aa11.44□□□□□ -0.58
CBX3P4-202ENST00000540428 RIPOR1Q6ZS17 1223 aa11.44□□□□□ -0.58
CBX3P4-202ENST00000540428 OR4N4Q8N0Y3 316 aa11.44□□□□□ -0.58
CBX3P4-202ENST00000540428 DTWD1Q8N5C7 304 aa11.44□□□□□ -0.58
CBX3P4-202ENST00000540428 RNF10Q8N5U6 811 aaKnown RBP11.44□□□□□ -0.58
CBX3P4-202ENST00000540428 CCDC89Q8N998 374 aa11.44□□□□□ -0.58
CBX3P4-202ENST00000540428 CATSPER1Q8NEC5 780 aa11.44□□□□□ -0.58
CBX3P4-202ENST00000540428 OR1N1Q8NGS0 311 aa11.44□□□□□ -0.58
CBX3P4-202ENST00000540428 PSMF1Q92530 271 aa11.44□□□□□ -0.58
CBX3P4-202ENST00000540428 HAS2Q92819 552 aa11.44□□□□□ -0.58
CBX3P4-202ENST00000540428 RELTQ969Z4 430 aa11.44□□□□□ -0.58
CBX3P4-202ENST00000540428 C10orf90Q96M02 699 aa11.44□□□□□ -0.58
CBX3P4-202ENST00000540428 BAG1Q99933 345 aaPredicted RBP11.44□□□□□ -0.58
CBX3P4-202ENST00000540428 DPH7Q9BTV6 452 aa11.44□□□□□ -0.58
CBX3P4-202ENST00000540428 RIC8BQ9NVN3 520 aa11.44□□□□□ -0.58
CBX3P4-202ENST00000540428 PFDN6O15212 129 aa11.43□□□□□ -0.58
CBX3P4-202ENST00000540428 ZG16O60844 167 aa11.43□□□□□ -0.58
CBX3P4-202ENST00000540428 BMP10O95393 424 aa11.43□□□□□ -0.58
CBX3P4-202ENST00000540428 ETS1P14921 441 aa11.43□□□□□ -0.58
CBX3P4-202ENST00000540428 CXCR2P25025 360 aa11.43□□□□□ -0.58
CBX3P4-202ENST00000540428 HSD17B2P37059 387 aa11.43□□□□□ -0.58
CBX3P4-202ENST00000540428 NPY2RP49146 381 aa11.43□□□□□ -0.58
CBX3P4-202ENST00000540428 TDGF1P3P51864 188 aa11.43□□□□□ -0.58
CBX3P4-202ENST00000540428 EMP2P54851 167 aa11.43□□□□□ -0.58
CBX3P4-202ENST00000540428 ADARP55265 1226 aaKnown RBP11.43□□□□□ -0.58
CBX3P4-202ENST00000540428 RELAQ04206 551 aa11.43□□□□□ -0.58
CBX3P4-202ENST00000540428 VWA2Q5GFL6 755 aa11.43□□□□□ -0.58
CBX3P4-202ENST00000540428 CTSL3PQ5NE16 218 aa11.43□□□□□ -0.58
CBX3P4-202ENST00000540428 RNF187Q5TA31 235 aaPredicted RBP11.43□□□□□ -0.58
CBX3P4-202ENST00000540428 GARNL3Q5VVW2 1013 aa11.43□□□□□ -0.58
CBX3P4-202ENST00000540428 MRNIPQ6NTE8 343 aa11.43□□□□□ -0.58
CBX3P4-202ENST00000540428 CNSTQ6PJW8 725 aa11.43□□□□□ -0.58
CBX3P4-202ENST00000540428 C4orf22Q6V702 233 aa11.43□□□□□ -0.58
CBX3P4-202ENST00000540428 SLC13A5Q86YT5 568 aaPredicted RBP11.43□□□□□ -0.58
CBX3P4-202ENST00000540428 TMEM139Q8IV31 216 aa11.43□□□□□ -0.58
CBX3P4-202ENST00000540428 PRSS58Q8IYP2 241 aa11.43□□□□□ -0.58
CBX3P4-202ENST00000540428 OR9A1PQ8NGU1 263 aa11.43□□□□□ -0.58
CBX3P4-202ENST00000540428 SMPDL3AQ92484 453 aa11.43□□□□□ -0.58
CBX3P4-202ENST00000540428 NR4A3Q92570 626 aa11.43□□□□□ -0.58
CBX3P4-202ENST00000540428 MARVELD3Q96A59 401 aa11.43□□□□□ -0.58
CBX3P4-202ENST00000540428 C8orf44Q96CB5 159 aa11.43□□□□□ -0.58
CBX3P4-202ENST00000540428 CABS1Q96KC9 395 aa11.43□□□□□ -0.58
CBX3P4-202ENST00000540428 BIRC8Q96P09 236 aa11.43□□□□□ -0.58
CBX3P4-202ENST00000540428 TCF12Q99081 682 aa11.43□□□□□ -0.58
CBX3P4-202ENST00000540428 PLCD4Q9BRC7 762 aa11.43□□□□□ -0.58
CBX3P4-202ENST00000540428 TGIF2Q9GZN2 237 aa11.43□□□□□ -0.58
CBX3P4-202ENST00000540428 RNF32Q9H0A6 362 aa11.43□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 83.3 ms