RNA–Protein interactions for RNA: ENST00000535375.1

PRKDC-205, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 3

Gene PRKDC, Length 464 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-205ENST00000535375 LETM2Q2VYF4 491 aa4.34□□□□□ -1.71
PRKDC-205ENST00000535375 C2CD6Q53TS8 623 aa4.34□□□□□ -1.71
PRKDC-205ENST00000535375 PRR27Q6MZM9 219 aa4.34□□□□□ -1.71
PRKDC-205ENST00000535375 UGT3A1Q6NUS8 523 aa4.34□□□□□ -1.71
PRKDC-205ENST00000535375 DET1Q7L5Y6 550 aa4.34□□□□□ -1.71
PRKDC-205ENST00000535375 OR4K1Q8NGD4 311 aa4.34□□□□□ -1.71
PRKDC-205ENST00000535375 SNRNP27Q8WVK2 155 aaKnown RBP4.34□□□□□ -1.71
PRKDC-205ENST00000535375 ARSGQ96EG1 525 aa4.34□□□□□ -1.71
PRKDC-205ENST00000535375 ZNF486Q96H40 463 aaPredicted RBP4.34□□□□□ -1.71
PRKDC-205ENST00000535375 ZMYND12Q9H0C1 365 aa4.34□□□□□ -1.71
PRKDC-205ENST00000535375 THAP2Q9H0W7 228 aa4.34□□□□□ -1.71
PRKDC-205ENST00000535375 TLE6Q9H808 572 aa4.34□□□□□ -1.71
PRKDC-205ENST00000535375 NUDT4Q9NZJ9 180 aa4.34□□□□□ -1.71
PRKDC-205ENST00000535375 FAM169AQ9Y6X4 670 aa4.34□□□□□ -1.71
PRKDC-205ENST00000535375 PASKQ96RG2 1323 aa4.33□□□□□ -1.72
PRKDC-205ENST00000535375 VTNP04004 478 aa4.33□□□□□ -1.72
PRKDC-205ENST00000535375 ZSCAN5DPP0CG00 497 aa4.33□□□□□ -1.72
PRKDC-205ENST00000535375 CYP2A7P20853 494 aa4.33□□□□□ -1.72
PRKDC-205ENST00000535375 PTGER4P35408 488 aa4.33□□□□□ -1.72
PRKDC-205ENST00000535375 LMO4P61968 165 aa4.33□□□□□ -1.72
PRKDC-205ENST00000535375 HNRNPKP61978 463 aaKnown RBP eCLIP4.33□□□□□ -1.72
PRKDC-205ENST00000535375 MYL7Q01449 175 aa4.33□□□□□ -1.72
PRKDC-205ENST00000535375 ELAVL2Q12926 359 aaKnown RBP4.33□□□□□ -1.72
PRKDC-205ENST00000535375 RAPSNQ13702 412 aa4.33□□□□□ -1.72
PRKDC-205ENST00000535375 PTPRCAPQ14761 206 aa4.33□□□□□ -1.72
PRKDC-205ENST00000535375 FASTKD3Q14CZ7 662 aaKnown RBP4.33□□□□□ -1.72
PRKDC-205ENST00000535375 Q6ZRP5 223 aa4.33□□□□□ -1.72
PRKDC-205ENST00000535375 SPEM1Q8N4L4 309 aa4.33□□□□□ -1.72
PRKDC-205ENST00000535375 TC2NQ8N9U0 490 aa4.33□□□□□ -1.72
PRKDC-205ENST00000535375 GOLGA6L2Q8N9W4 650 aaPredicted RBP4.33□□□□□ -1.72
PRKDC-205ENST00000535375 NUP37Q8NFH4 326 aa4.33□□□□□ -1.72
PRKDC-205ENST00000535375 SERINC2Q96SA4 455 aa4.33□□□□□ -1.72
PRKDC-205ENST00000535375 LRRC61Q9BV99 259 aa4.33□□□□□ -1.72
PRKDC-205ENST00000535375 CNOT10Q9H9A5 744 aaKnown RBP4.33□□□□□ -1.72
PRKDC-205ENST00000535375 CLIC5Q9NZA1 410 aa4.33□□□□□ -1.72
PRKDC-205ENST00000535375 ANAPC2Q9UJX6 822 aa4.33□□□□□ -1.72
PRKDC-205ENST00000535375 CHKBQ9Y259 395 aa4.33□□□□□ -1.72
PRKDC-205ENST00000535375 R4GN57 208 aa4.33□□□□□ -1.72
PRKDC-205ENST00000535375 TRIM77I1YAP6 450 aa4.32□□□□□ -1.72
PRKDC-205ENST00000535375 TIMM44O43615 452 aa4.32□□□□□ -1.72
PRKDC-205ENST00000535375 C22orf31O95567 290 aa4.32□□□□□ -1.72
PRKDC-205ENST00000535375 SAGP10523 405 aaPredicted RBP4.32□□□□□ -1.72
PRKDC-205ENST00000535375 NR2F1P10589 423 aa4.32□□□□□ -1.72
PRKDC-205ENST00000535375 EEF1B2P24534 225 aaKnown RBP4.32□□□□□ -1.72
PRKDC-205ENST00000535375 HLA-FP30511 346 aa4.32□□□□□ -1.72
PRKDC-205ENST00000535375 ASCL1P50553 236 aa4.32□□□□□ -1.72
PRKDC-205ENST00000535375 CCR3P51677 355 aa4.32□□□□□ -1.72
PRKDC-205ENST00000535375 IFI35P80217 286 aaPredicted RBP4.32□□□□□ -1.72
PRKDC-205ENST00000535375 ITGA7Q13683 1181 aa4.32□□□□□ -1.72
PRKDC-205ENST00000535375 ENPP2Q13822 863 aa4.32□□□□□ -1.72
PRKDC-205ENST00000535375 SNTB1Q13884 538 aaKnown RBP4.32□□□□□ -1.72
PRKDC-205ENST00000535375 ZNF74Q16587 644 aa4.32□□□□□ -1.72
PRKDC-205ENST00000535375 MTHFSDQ2M296 383 aaKnown RBP4.32□□□□□ -1.72
PRKDC-205ENST00000535375 SNAI3Q3KNW1 292 aa4.32□□□□□ -1.72
PRKDC-205ENST00000535375 ZBTB49Q6ZSB9 765 aa4.32□□□□□ -1.72
PRKDC-205ENST00000535375 P2RY8Q86VZ1 359 aa4.32□□□□□ -1.72
PRKDC-205ENST00000535375 POGLUT1Q8NBL1 392 aa4.32□□□□□ -1.72
PRKDC-205ENST00000535375 SLC4A11Q8NBS3 891 aa4.32□□□□□ -1.72
PRKDC-205ENST00000535375 APOBEC4Q8WW27 367 aaKnown RBP4.32□□□□□ -1.72
PRKDC-205ENST00000535375 SECISBP2LQ93073 1101 aaKnown RBP4.32□□□□□ -1.72
PRKDC-205ENST00000535375 FAM71F1Q96KD3 344 aaPredicted RBP4.32□□□□□ -1.72
PRKDC-205ENST00000535375 SPAG5Q96R06 1193 aa4.32□□□□□ -1.72
PRKDC-205ENST00000535375 ZNF300Q96RE9 604 aaPredicted RBP4.32□□□□□ -1.72
PRKDC-205ENST00000535375 LPAR4Q99677 370 aa4.32□□□□□ -1.72
PRKDC-205ENST00000535375 EGFL8Q99944 293 aa4.32□□□□□ -1.72
PRKDC-205ENST00000535375 GPATCH1Q9BRR8 931 aaKnown RBP4.32□□□□□ -1.72
PRKDC-205ENST00000535375 DCTN5Q9BTE1 182 aa4.32□□□□□ -1.72
PRKDC-205ENST00000535375 NYXQ9GZU5 481 aa4.32□□□□□ -1.72
PRKDC-205ENST00000535375 CDH20Q9HBT6 801 aa4.32□□□□□ -1.72
PRKDC-205ENST00000535375 TEX10Q9NXF1 929 aaPredicted RBP4.32□□□□□ -1.72
PRKDC-205ENST00000535375 THEGQ9P2T0 379 aa4.32□□□□□ -1.72
PRKDC-205ENST00000535375 RNF150Q9ULK6 438 aa4.32□□□□□ -1.72
PRKDC-205ENST00000535375 CACNA1FO60840 1977 aa4.32□□□□□ -1.72
PRKDC-205ENST00000535375 A0A1W2PR80 420 aa4.31□□□□□ -1.72
PRKDC-205ENST00000535375 H0YAE9 185 aa4.31□□□□□ -1.72
PRKDC-205ENST00000535375 O00370 1275 aa4.31□□□□□ -1.72
PRKDC-205ENST00000535375 IGHEP01854 428 aa4.31□□□□□ -1.72
PRKDC-205ENST00000535375 HSP90AA1P07900 732 aaKnown RBP4.31□□□□□ -1.72
PRKDC-205ENST00000535375 CAPZA2P47755 286 aa4.31□□□□□ -1.72
PRKDC-205ENST00000535375 LHX1P48742 406 aa4.31□□□□□ -1.72
PRKDC-205ENST00000535375 VAMP7P51809 220 aa4.31□□□□□ -1.72
PRKDC-205ENST00000535375 CSE1LP55060 971 aaKnown RBP4.31□□□□□ -1.72
PRKDC-205ENST00000535375 DSCR10P59022 87 aa4.31□□□□□ -1.72
PRKDC-205ENST00000535375 GUCY2DQ02846 1103 aa4.31□□□□□ -1.72
PRKDC-205ENST00000535375 CALD1Q05682 793 aaKnown RBP4.31□□□□□ -1.72
PRKDC-205ENST00000535375 ALCAMQ13740 583 aa4.31□□□□□ -1.72
PRKDC-205ENST00000535375 EFTUD2Q15029 972 aaKnown RBP eCLIP4.31□□□□□ -1.72
PRKDC-205ENST00000535375 VWC2Q2TAL6 325 aa4.31□□□□□ -1.72
PRKDC-205ENST00000535375 C9orf152Q5JTZ5 239 aa4.31□□□□□ -1.72
PRKDC-205ENST00000535375 KRT39Q6A163 491 aa4.31□□□□□ -1.72
PRKDC-205ENST00000535375 CENPVQ7Z7K6 275 aaPredicted RBP4.31□□□□□ -1.72
PRKDC-205ENST00000535375 IQCHQ86VS3 1027 aa4.31□□□□□ -1.72
PRKDC-205ENST00000535375 RYBPQ8N488 228 aaPredicted RBP4.31□□□□□ -1.72
PRKDC-205ENST00000535375 NOA1Q8NC60 698 aaKnown RBP4.31□□□□□ -1.72
PRKDC-205ENST00000535375 SLC37A3Q8NCC5 494 aa4.31□□□□□ -1.72
PRKDC-205ENST00000535375 OR7A2PQ8NGA2 310 aa4.31□□□□□ -1.72
PRKDC-205ENST00000535375 GATAD1Q8WUU5 269 aa4.31□□□□□ -1.72
PRKDC-205ENST00000535375 GTF3AQ92664 365 aaKnown RBP4.31□□□□□ -1.72
PRKDC-205ENST00000535375 OMA1Q96E52 524 aa4.31□□□□□ -1.72
PRKDC-205ENST00000535375 C4orf45Q96LM5 186 aa4.31□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms