RNA–Protein interactions for RNA: ENST00000527889.5

CD44-226, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-226ENST00000527889 KLHL18O94889 574 aa4.1□□□□□ -1.75
CD44-226ENST00000527889 PGLSO95336 258 aa4.1□□□□□ -1.75
CD44-226ENST00000527889 NFATC1O95644 943 aa4.1□□□□□ -1.75
CD44-226ENST00000527889 GUCA1CO95843 209 aa4.1□□□□□ -1.75
CD44-226ENST00000527889 GSRP00390 522 aa4.1□□□□□ -1.75
CD44-226ENST00000527889 GOT2P00505 430 aaKnown RBP4.1□□□□□ -1.75
CD44-226ENST00000527889 ALDOAP04075 364 aaKnown RBP4.1□□□□□ -1.75
CD44-226ENST00000527889 CD1AP06126 327 aa4.1□□□□□ -1.75
CD44-226ENST00000527889 ITGA2BP08514 1039 aa4.1□□□□□ -1.75
CD44-226ENST00000527889 ITGA5P08648 1049 aa4.1□□□□□ -1.75
CD44-226ENST00000527889 ALPIP09923 528 aa4.1□□□□□ -1.75
CD44-226ENST00000527889 SFTPCP11686 197 aa4.1□□□□□ -1.75
CD44-226ENST00000527889 LAMP2P13473 410 aa4.1□□□□□ -1.75
CD44-226ENST00000527889 ALADP13716 330 aa4.1□□□□□ -1.75
CD44-226ENST00000527889 RPS2P15880 293 aaKnown RBP4.1□□□□□ -1.75
CD44-226ENST00000527889 HOXB8P17481 243 aaPredicted RBP4.1□□□□□ -1.75
CD44-226ENST00000527889 KRT4P19013 534 aa4.1□□□□□ -1.75
CD44-226ENST00000527889 SAT1P21673 171 aa4.1□□□□□ -1.75
CD44-226ENST00000527889 CA4P22748 312 aa4.1□□□□□ -1.75
CD44-226ENST00000527889 CNTFP26441 200 aa4.1□□□□□ -1.75
CD44-226ENST00000527889 GABRB3P28472 473 aa4.1□□□□□ -1.75
CD44-226ENST00000527889 GDI1P31150 447 aa4.1□□□□□ -1.75
CD44-226ENST00000527889 GALNSP34059 522 aa4.1□□□□□ -1.75
CD44-226ENST00000527889 CRHR1P34998 444 aa4.1□□□□□ -1.75
CD44-226ENST00000527889 RPA3P35244 121 aaPredicted RBP4.1□□□□□ -1.75
CD44-226ENST00000527889 GP5P40197 560 aa4.1□□□□□ -1.75
CD44-226ENST00000527889 MDH1P40925 334 aaKnown RBP4.1□□□□□ -1.75
CD44-226ENST00000527889 MTHFRP42898 656 aa4.1□□□□□ -1.75
CD44-226ENST00000527889 ARCN1P48444 511 aaKnown RBP4.1□□□□□ -1.75
CD44-226ENST00000527889 SERPINB9P50453 376 aa4.1□□□□□ -1.75
CD44-226ENST00000527889 CCNHP51946 323 aaPredicted RBP4.1□□□□□ -1.75
CD44-226ENST00000527889 SEC24CP53992 1094 aa4.1□□□□□ -1.75
CD44-226ENST00000527889 CLNS1AP54105 237 aaKnown RBP4.1□□□□□ -1.75
CD44-226ENST00000527889 AP1S1P61966 158 aa4.1□□□□□ -1.75
CD44-226ENST00000527889 SNRPD1P62314 119 aaKnown RBP4.1□□□□□ -1.75
CD44-226ENST00000527889 PRAMEP78395 509 aa4.1□□□□□ -1.75
CD44-226ENST00000527889 IRX4P78413 519 aa4.1□□□□□ -1.75
CD44-226ENST00000527889 PDE1BQ01064 536 aa4.1□□□□□ -1.75
CD44-226ENST00000527889 SLC18A2Q05940 514 aa4.1□□□□□ -1.75
CD44-226ENST00000527889 SULT2A1Q06520 285 aa4.1□□□□□ -1.75
CD44-226ENST00000527889 BCL2L1Q07817 233 aa4.1□□□□□ -1.75
CD44-226ENST00000527889 SF3A3Q12874 501 aaKnown RBP eCLIP4.1□□□□□ -1.75
CD44-226ENST00000527889 NAB1Q13506 487 aa4.1□□□□□ -1.75
CD44-226ENST00000527889 FRG1Q14331 258 aaKnown RBP4.1□□□□□ -1.75
CD44-226ENST00000527889 SEMA3AQ14563 771 aa4.1□□□□□ -1.75
CD44-226ENST00000527889 DMC1Q14565 340 aa4.1□□□□□ -1.75
CD44-226ENST00000527889 RTP5Q14D33 572 aa4.1□□□□□ -1.75
CD44-226ENST00000527889 PDGFRLQ15198 375 aa4.1□□□□□ -1.75
CD44-226ENST00000527889 RASA2Q15283 850 aa4.1□□□□□ -1.75
CD44-226ENST00000527889 MYLK3Q32MK0 819 aa4.1□□□□□ -1.75
CD44-226ENST00000527889 POM121L1PQ3SYA9 428 aa4.1□□□□□ -1.75
CD44-226ENST00000527889 PREPLQ4J6C6 727 aaPredicted RBP4.1□□□□□ -1.75
CD44-226ENST00000527889 CARD16Q5EG05 197 aa4.1□□□□□ -1.75
CD44-226ENST00000527889 ZNF789Q5FWF6 425 aa4.1□□□□□ -1.75
CD44-226ENST00000527889 ARMC12Q5T9G4 340 aa4.1□□□□□ -1.75
CD44-226ENST00000527889 HHATQ5VTY9 493 aa4.1□□□□□ -1.75
CD44-226ENST00000527889 ZNF470Q6ECI4 717 aa4.1□□□□□ -1.75
CD44-226ENST00000527889 KIAA0930Q6ICG6 404 aaPredicted RBP4.1□□□□□ -1.75
CD44-226ENST00000527889 CNSTQ6PJW8 725 aa4.1□□□□□ -1.75
CD44-226ENST00000527889 PARM1Q6UWI2 310 aa4.1□□□□□ -1.75
CD44-226ENST00000527889 DPY19L3Q6ZPD9 716 aa4.1□□□□□ -1.75
CD44-226ENST00000527889 PRR23BQ6ZRT6 265 aa4.1□□□□□ -1.75
CD44-226ENST00000527889 PTAR1Q7Z6K3 402 aaPredicted RBP4.1□□□□□ -1.75
CD44-226ENST00000527889 CMC1Q7Z7K0 106 aa4.1□□□□□ -1.75
CD44-226ENST00000527889 MOGAT3Q86VF5 341 aa4.1□□□□□ -1.75
CD44-226ENST00000527889 ZSWIM9Q86XI8 627 aa4.1□□□□□ -1.75
CD44-226ENST00000527889 MFSD6LQ8IWD5 586 aa4.1□□□□□ -1.75
CD44-226ENST00000527889 YAF2Q8IY57 180 aa4.1□□□□□ -1.75
CD44-226ENST00000527889 PEX5LQ8IYB4 626 aa4.1□□□□□ -1.75
CD44-226ENST00000527889 PCDH20Q8N6Y1 951 aaKnown RBP4.1□□□□□ -1.75
CD44-226ENST00000527889 DDX51Q8N8A6 666 aaKnown RBP eCLIP4.1□□□□□ -1.75
CD44-226ENST00000527889 GBP7Q8N8V2 638 aaPredicted RBP4.1□□□□□ -1.75
CD44-226ENST00000527889 SIMC1Q8NDZ2 872 aa4.1□□□□□ -1.75
CD44-226ENST00000527889 ACVR1CQ8NER5 493 aa4.1□□□□□ -1.75
CD44-226ENST00000527889 OR4K2Q8NGD2 314 aa4.1□□□□□ -1.75
CD44-226ENST00000527889 OR2AP1Q8NGE2 309 aa4.1□□□□□ -1.75
CD44-226ENST00000527889 TCP10LQ8TDR4 215 aa4.1□□□□□ -1.75
CD44-226ENST00000527889 PIH1D2Q8WWB5 315 aa4.1□□□□□ -1.75
CD44-226ENST00000527889 STON2Q8WXE9 905 aa4.1□□□□□ -1.75
CD44-226ENST00000527889 VOPP1Q96AW1 172 aa4.1□□□□□ -1.75
CD44-226ENST00000527889 CHFRQ96EP1 664 aa4.1□□□□□ -1.75
CD44-226ENST00000527889 RBM18Q96H35 190 aaKnown RBP4.1□□□□□ -1.75
CD44-226ENST00000527889 APOPT1Q96IL0 206 aa4.1□□□□□ -1.75
CD44-226ENST00000527889 VPS39Q96JC1 886 aa4.1□□□□□ -1.75
CD44-226ENST00000527889 SMC6Q96SB8 1091 aa4.1□□□□□ -1.75
CD44-226ENST00000527889 RBBP8Q99708 897 aa4.1□□□□□ -1.75
CD44-226ENST00000527889 BARD1Q99728 777 aaKnown RBP4.1□□□□□ -1.75
CD44-226ENST00000527889 SYT3Q9BQG1 590 aa4.1□□□□□ -1.75
CD44-226ENST00000527889 CNPPD1Q9BV87 410 aa4.1□□□□□ -1.75
CD44-226ENST00000527889 SLC2A11Q9BYW1 496 aa4.1□□□□□ -1.75
CD44-226ENST00000527889 ATP13A3Q9H7F0 1226 aa4.1□□□□□ -1.75
CD44-226ENST00000527889 CNOT10Q9H9A5 744 aaKnown RBP4.1□□□□□ -1.75
CD44-226ENST00000527889 TRPV4Q9HBA0 871 aa4.1□□□□□ -1.75
CD44-226ENST00000527889 BPIFA1Q9NP55 256 aa4.1□□□□□ -1.75
CD44-226ENST00000527889 WASH6PQ9NQA3 447 aa4.1□□□□□ -1.75
CD44-226ENST00000527889 FBXO6Q9NRD1 293 aaPredicted RBP4.1□□□□□ -1.75
CD44-226ENST00000527889 ABCF3Q9NUQ8 709 aa4.1□□□□□ -1.75
CD44-226ENST00000527889 TMEM140Q9NV12 185 aa4.1□□□□□ -1.75
CD44-226ENST00000527889 INTS9Q9NV88 658 aaKnown RBP4.1□□□□□ -1.75
CD44-226ENST00000527889 ETAA1Q9NY74 926 aa4.1□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms