RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), human

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-223	ENST00000526553	CCDC188	H7C350	402 aa		4.07	□□□□□ -1.76
CD44-223	ENST00000526553	DCX	O43602	365 aa		4.07	□□□□□ -1.76
CD44-223	ENST00000526553	EXTL3	O43909	919 aa		4.07	□□□□□ -1.76
CD44-223	ENST00000526553	TRUB2	O95900	331 aa	Known RBP	4.07	□□□□□ -1.76
CD44-223	ENST00000526553	TBX6	O95947	436 aa	Predicted RBP	4.07	□□□□□ -1.76
CD44-223	ENST00000526553	IGHV2-70	P01814	119 aa		4.07	□□□□□ -1.76
CD44-223	ENST00000526553	RAB40AL	P0C0E4	278 aa		4.07	□□□□□ -1.76
CD44-223	ENST00000526553	HAPLN1	P10915	354 aa	Predicted RBP	4.07	□□□□□ -1.76
CD44-223	ENST00000526553	CDH3	P22223	829 aa		4.07	□□□□□ -1.76
CD44-223	ENST00000526553	PTPN3	P26045	913 aa		4.07	□□□□□ -1.76
CD44-223	ENST00000526553	OAS2	P29728	719 aa	Known RBP	4.07	□□□□□ -1.76
CD44-223	ENST00000526553	NKX2-1	P43699	371 aa	Predicted RBP	4.07	□□□□□ -1.76
CD44-223	ENST00000526553	KRTAP10-12	P60413	245 aa		4.07	□□□□□ -1.76
CD44-223	ENST00000526553	HNRNPK	P61978	463 aa	Known RBP eCLIP	4.07	□□□□□ -1.76
CD44-223	ENST00000526553	ZNF415	Q09FC8	603 aa		4.07	□□□□□ -1.76
CD44-223	ENST00000526553	RALGDS	Q12967	914 aa		4.07	□□□□□ -1.76
CD44-223	ENST00000526553	SGSM1	Q2NKQ1	1148 aa		4.07	□□□□□ -1.76
CD44-223	ENST00000526553	KLHL26	Q53HC5	615 aa		4.07	□□□□□ -1.76
CD44-223	ENST00000526553	ODF2	Q5BJF6	829 aa		4.07	□□□□□ -1.76
CD44-223	ENST00000526553	XKR6	Q5GH73	641 aa		4.07	□□□□□ -1.76
CD44-223	ENST00000526553	ADCK2	Q7Z695	626 aa		4.07	□□□□□ -1.76
CD44-223	ENST00000526553	RTN4RL2	Q86UN3	420 aa		4.07	□□□□□ -1.76
CD44-223	ENST00000526553	IQCA1	Q86XH1	822 aa		4.07	□□□□□ -1.76
CD44-223	ENST00000526553	CDK20	Q8IZL9	346 aa		4.07	□□□□□ -1.76
CD44-223	ENST00000526553	EID3	Q8N140	333 aa		4.07	□□□□□ -1.76
CD44-223	ENST00000526553	DCLK2	Q8N568	766 aa		4.07	□□□□□ -1.76
CD44-223	ENST00000526553	DBF4B	Q8NFT6	615 aa		4.07	□□□□□ -1.76
CD44-223	ENST00000526553	TEKT4	Q8WW24	435 aa		4.07	□□□□□ -1.76
CD44-223	ENST00000526553	MRPS27	Q92552	414 aa	Known RBP	4.07	□□□□□ -1.76
CD44-223	ENST00000526553	SYN2	Q92777	582 aa	Predicted RBP	4.07	□□□□□ -1.76
CD44-223	ENST00000526553	MOCOS	Q96EN8	888 aa		4.07	□□□□□ -1.76
CD44-223	ENST00000526553	OR2B2	Q9GZK3	357 aa		4.07	□□□□□ -1.76
CD44-223	ENST00000526553	GPR88	Q9GZN0	384 aa		4.07	□□□□□ -1.76
CD44-223	ENST00000526553	GOLPH3L	Q9H4A5	285 aa		4.07	□□□□□ -1.76
CD44-223	ENST00000526553	ATP13A3	Q9H7F0	1226 aa		4.07	□□□□□ -1.76
CD44-223	ENST00000526553	OLAH	Q9NV23	265 aa		4.07	□□□□□ -1.76
CD44-223	ENST00000526553	PRMT7	Q9NVM4	692 aa	Predicted RBP	4.07	□□□□□ -1.76
CD44-223	ENST00000526553	HAO2	Q9NYQ3	351 aa		4.07	□□□□□ -1.76
CD44-223	ENST00000526553	STUB1	Q9UNE7	303 aa		4.07	□□□□□ -1.76
CD44-223	ENST00000526553	NACAD	O15069	1562 aa		4.06	□□□□□ -1.76
CD44-223	ENST00000526553		A0A0J9YWU9	116 aa		4.06	□□□□□ -1.76
CD44-223	ENST00000526553	NEMP2	A6NFY4	417 aa		4.06	□□□□□ -1.76
CD44-223	ENST00000526553	ENO4	A6NNW6	628 aa		4.06	□□□□□ -1.76
CD44-223	ENST00000526553	TADA2A	O75478	443 aa		4.06	□□□□□ -1.76
CD44-223	ENST00000526553	SLU7	O95391	586 aa	Known RBP	4.06	□□□□□ -1.76
CD44-223	ENST00000526553	ATP5B	P06576	529 aa	Known RBP	4.06	□□□□□ -1.76
CD44-223	ENST00000526553	DPEP1	P16444	411 aa		4.06	□□□□□ -1.76
CD44-223	ENST00000526553	KRTAP10-5	P60370	271 aa		4.06	□□□□□ -1.76
CD44-223	ENST00000526553	SCN1B	Q07699	218 aa		4.06	□□□□□ -1.76
CD44-223	ENST00000526553	TAF10	Q12962	218 aa		4.06	□□□□□ -1.76
CD44-223	ENST00000526553	PTPRCAP	Q14761	206 aa		4.06	□□□□□ -1.76
CD44-223	ENST00000526553	CDC37	Q16543	378 aa	Predicted RBP	4.06	□□□□□ -1.76
CD44-223	ENST00000526553	ZNF613	Q6PF04	617 aa		4.06	□□□□□ -1.76
CD44-223	ENST00000526553	TRIM65	Q6PJ69	517 aa		4.06	□□□□□ -1.76
CD44-223	ENST00000526553	FIP1L1	Q6UN15	594 aa	Known RBP	4.06	□□□□□ -1.76
CD44-223	ENST00000526553	STXBP4	Q6ZWJ1	553 aa		4.06	□□□□□ -1.76
CD44-223	ENST00000526553	DNAJB7	Q7Z6W7	309 aa	Predicted RBP	4.06	□□□□□ -1.76
CD44-223	ENST00000526553	LACC1	Q8IV20	430 aa		4.06	□□□□□ -1.76
CD44-223	ENST00000526553	PI4KAP1	Q8N8J0	262 aa		4.06	□□□□□ -1.76
CD44-223	ENST00000526553	OR10G8	Q8NGN5	311 aa		4.06	□□□□□ -1.76
CD44-223	ENST00000526553	GDAP1	Q8TB36	358 aa		4.06	□□□□□ -1.76
CD44-223	ENST00000526553	SECISBP2L	Q93073	1101 aa	Known RBP	4.06	□□□□□ -1.76
CD44-223	ENST00000526553	SYT15	Q9BQS2	421 aa		4.06	□□□□□ -1.76
CD44-223	ENST00000526553	TRIM51	Q9BSJ1	452 aa		4.06	□□□□□ -1.76
CD44-223	ENST00000526553	THUMPD3	Q9BV44	507 aa	Known RBP	4.06	□□□□□ -1.76
CD44-223	ENST00000526553	C2orf40	Q9H1Z8	148 aa		4.06	□□□□□ -1.76
CD44-223	ENST00000526553	NOL11	Q9H8H0	719 aa	Known RBP	4.06	□□□□□ -1.76
CD44-223	ENST00000526553	TRPV4	Q9HBA0	871 aa		4.06	□□□□□ -1.76
CD44-223	ENST00000526553	FAM207A	Q9NSI2	230 aa	Predicted RBP	4.06	□□□□□ -1.76
CD44-223	ENST00000526553	EPHA6	Q9UF33	1036 aa		4.06	□□□□□ -1.76
CD44-223	ENST00000526553	WDR37	Q9Y2I8	494 aa		4.06	□□□□□ -1.76
CD44-223	ENST00000526553	MMP24	Q9Y5R2	645 aa		4.06	□□□□□ -1.76
CD44-223	ENST00000526553	IGLV7-46	A0A075B6I9	117 aa		4.05	□□□□□ -1.76
CD44-223	ENST00000526553		H7C423	109 aa		4.05	□□□□□ -1.76
CD44-223	ENST00000526553	STX6	O43752	255 aa		4.05	□□□□□ -1.76
CD44-223	ENST00000526553	GLRA3	O75311	464 aa		4.05	□□□□□ -1.76
CD44-223	ENST00000526553	C22orf31	O95567	290 aa		4.05	□□□□□ -1.76
CD44-223	ENST00000526553	SMIM18	P0DKX4	95 aa		4.05	□□□□□ -1.76
CD44-223	ENST00000526553	JAK1	P23458	1154 aa		4.05	□□□□□ -1.76
CD44-223	ENST00000526553	MPZ	P25189	248 aa		4.05	□□□□□ -1.76
CD44-223	ENST00000526553	MC5R	P33032	325 aa		4.05	□□□□□ -1.76
CD44-223	ENST00000526553	PCGF2	P35227	344 aa		4.05	□□□□□ -1.76
CD44-223	ENST00000526553	TCF7	P36402	384 aa	Predicted RBP	4.05	□□□□□ -1.76
CD44-223	ENST00000526553	CCR10	P46092	362 aa		4.05	□□□□□ -1.76
CD44-223	ENST00000526553	ALDH3A2	P51648	485 aa		4.05	□□□□□ -1.76
CD44-223	ENST00000526553	GSDMD	P57764	484 aa		4.05	□□□□□ -1.76
CD44-223	ENST00000526553	UGP2	Q16851	508 aa		4.05	□□□□□ -1.76
CD44-223	ENST00000526553	UGT3A2	Q3SY77	523 aa		4.05	□□□□□ -1.76
CD44-223	ENST00000526553	XKR3	Q5GH77	459 aa		4.05	□□□□□ -1.76
CD44-223	ENST00000526553	SLC25A53	Q5H9E4	307 aa		4.05	□□□□□ -1.76
CD44-223	ENST00000526553	MFSD12	Q6NUT3	480 aa		4.05	□□□□□ -1.76
CD44-223	ENST00000526553	MSANTD1	Q6ZTZ1	278 aa		4.05	□□□□□ -1.76
CD44-223	ENST00000526553	ARHGAP22	Q7Z5H3	698 aa		4.05	□□□□□ -1.76
CD44-223	ENST00000526553	GLRX5	Q86SX6	157 aa		4.05	□□□□□ -1.76
CD44-223	ENST00000526553	MFN1	Q8IWA4	741 aa		4.05	□□□□□ -1.76
CD44-223	ENST00000526553	CCAR2	Q8N163	923 aa	Known RBP	4.05	□□□□□ -1.76
CD44-223	ENST00000526553	IQUB	Q8NA54	791 aa		4.05	□□□□□ -1.76
CD44-223	ENST00000526553	CAMKV	Q8NCB2	501 aa		4.05	□□□□□ -1.76
CD44-223	ENST00000526553	OR13C3	Q8NGS6	347 aa		4.05	□□□□□ -1.76
CD44-223	ENST00000526553	ERO1A	Q96HE7	468 aa		4.05	□□□□□ -1.76

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