RNA–Protein interactions for RNA: ENST00000523261.1

NKX3-1-202, Transcript of NK3 homeobox 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene NKX3-1, Length 713 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1-202ENST00000523261 A0A0A6YYK5 440 aaPredicted RBP13.11□□□□□ -0.31
NKX3-1-202ENST00000523261 USP27XA6NNY8 438 aa13.11□□□□□ -0.31
NKX3-1-202ENST00000523261 CFAP99D6REC4 459 aa13.11□□□□□ -0.31
NKX3-1-202ENST00000523261 H7C1Q1 480 aa13.11□□□□□ -0.31
NKX3-1-202ENST00000523261 SRPX2O60687 465 aaPredicted RBP13.11□□□□□ -0.31
NKX3-1-202ENST00000523261 SEC24DO94855 1032 aaPredicted RBP13.11□□□□□ -0.31
NKX3-1-202ENST00000523261 AP2A1O95782 977 aa13.11□□□□□ -0.31
NKX3-1-202ENST00000523261 XIAPP98170 497 aa13.11□□□□□ -0.31
NKX3-1-202ENST00000523261 TAZQ16635 292 aa13.11□□□□□ -0.31
NKX3-1-202ENST00000523261 MEP1AQ16819 746 aa13.11□□□□□ -0.31
NKX3-1-202ENST00000523261 BTBD16Q32M84 506 aa13.11□□□□□ -0.31
NKX3-1-202ENST00000523261 PLAG1Q6DJT9 500 aa13.11□□□□□ -0.31
NKX3-1-202ENST00000523261 FRMPD2BQ6IN97 320 aa13.11□□□□□ -0.31
NKX3-1-202ENST00000523261 LMNTD1Q8N9Z9 388 aa13.11□□□□□ -0.31
NKX3-1-202ENST00000523261 KCTD6Q8NC69 237 aa13.11□□□□□ -0.31
NKX3-1-202ENST00000523261 SIMC1Q8NDZ2 872 aa13.11□□□□□ -0.31
NKX3-1-202ENST00000523261 OR5K2Q8NHB8 316 aa13.11□□□□□ -0.31
NKX3-1-202ENST00000523261 MRGPRX2Q96LB1 330 aa13.11□□□□□ -0.31
NKX3-1-202ENST00000523261 COPS8Q99627 209 aa13.11□□□□□ -0.31
NKX3-1-202ENST00000523261 TGIF2Q9GZN2 237 aa13.11□□□□□ -0.31
NKX3-1-202ENST00000523261 VPS37BQ9H9H4 285 aa13.11□□□□□ -0.31
NKX3-1-202ENST00000523261 INTS7Q9NVH2 962 aaKnown RBP13.11□□□□□ -0.31
NKX3-1-202ENST00000523261 CAMSAP3Q9P1Y5 1249 aaPredicted RBP13.11□□□□□ -0.31
NKX3-1-202ENST00000523261 ZC3H7BQ9UGR2 993 aaKnown RBP13.11□□□□□ -0.31
NKX3-1-202ENST00000523261 FAM153AQ9UHL3 310 aa13.11□□□□□ -0.31
NKX3-1-202ENST00000523261 CRLS1Q9UJA2 301 aa13.11□□□□□ -0.31
NKX3-1-202ENST00000523261 ARL5AQ9Y689 179 aa13.11□□□□□ -0.31
NKX3-1-202ENST00000523261 IGLV3-16A0A075B6K0 115 aa13.1□□□□□ -0.31
NKX3-1-202ENST00000523261 DDX3XO00571 662 aaKnown RBP eCLIP13.1□□□□□ -0.31
NKX3-1-202ENST00000523261 NME2P1O60361 137 aa13.1□□□□□ -0.31
NKX3-1-202ENST00000523261 SUN1O94901 812 aa13.1□□□□□ -0.31
NKX3-1-202ENST00000523261 MYBL1P10243 752 aa13.1□□□□□ -0.31
NKX3-1-202ENST00000523261 CDK11BP21127 795 aaKnown RBP13.1□□□□□ -0.31
NKX3-1-202ENST00000523261 NME2P22392 152 aa13.1□□□□□ -0.31
NKX3-1-202ENST00000523261 PKLRP30613 574 aa13.1□□□□□ -0.31
NKX3-1-202ENST00000523261 GJC1P36383 396 aa13.1□□□□□ -0.31
NKX3-1-202ENST00000523261 OC90Q02509 493 aaPredicted RBP13.1□□□□□ -0.31
NKX3-1-202ENST00000523261 PDK2Q15119 407 aa13.1□□□□□ -0.31
NKX3-1-202ENST00000523261 SLC1A5Q15758 541 aa13.1□□□□□ -0.31
NKX3-1-202ENST00000523261 MAPKAPK3Q16644 382 aa13.1□□□□□ -0.31
NKX3-1-202ENST00000523261 MUM1Q2TAK8 710 aa13.1□□□□□ -0.31
NKX3-1-202ENST00000523261 TEX44Q53QW1 395 aa13.1□□□□□ -0.31
NKX3-1-202ENST00000523261 HORMAD2Q8N7B1 307 aa13.1□□□□□ -0.31
NKX3-1-202ENST00000523261 PLD5Q8N7P1 536 aa13.1□□□□□ -0.31
NKX3-1-202ENST00000523261 AMER3Q8N944 861 aa13.1□□□□□ -0.31
NKX3-1-202ENST00000523261 OR4K2Q8NGD2 314 aa13.1□□□□□ -0.31
NKX3-1-202ENST00000523261 HEXDCQ8WVB3 486 aa13.1□□□□□ -0.31
NKX3-1-202ENST00000523261 ULK4Q96C45 1275 aa13.1□□□□□ -0.31
NKX3-1-202ENST00000523261 TRIM11Q96F44 468 aa13.1□□□□□ -0.31
NKX3-1-202ENST00000523261 YIPF2Q9BWQ6 316 aa13.1□□□□□ -0.31
NKX3-1-202ENST00000523261 HEY1Q9Y5J3 304 aa13.1□□□□□ -0.31
NKX3-1-202ENST00000523261 LOC105369274A0A096LPK9 316 aa13.09□□□□□ -0.31
NKX3-1-202ENST00000523261 IGHV3-20A0A0C4DH32 117 aa13.09□□□□□ -0.31
NKX3-1-202ENST00000523261 LOC102723532A0A0G2JNH3 316 aa13.09□□□□□ -0.31
NKX3-1-202ENST00000523261 GABRR3A8MPY1 467 aa13.09□□□□□ -0.31
NKX3-1-202ENST00000523261 SLC25A12O75746 678 aa13.09□□□□□ -0.31
NKX3-1-202ENST00000523261 C8orf89P0DMQ9 161 aa13.09□□□□□ -0.31
NKX3-1-202ENST00000523261 TFEBP19484 476 aa13.09□□□□□ -0.31
NKX3-1-202ENST00000523261 CD68P34810 354 aaPredicted RBP13.09□□□□□ -0.31
NKX3-1-202ENST00000523261 SSR1P43307 286 aaKnown RBP13.09□□□□□ -0.31
NKX3-1-202ENST00000523261 DCAF7P61962 342 aa13.09□□□□□ -0.31
NKX3-1-202ENST00000523261 HADHQ16836 314 aaKnown RBP13.09□□□□□ -0.31
NKX3-1-202ENST00000523261 CMPK2Q5EBM0 449 aa13.09□□□□□ -0.31
NKX3-1-202ENST00000523261 UNC5DQ6UXZ4 953 aa13.09□□□□□ -0.31
NKX3-1-202ENST00000523261 LIX1LQ8IVB5 337 aa13.09□□□□□ -0.31
NKX3-1-202ENST00000523261 OR4N4Q8N0Y3 316 aa13.09□□□□□ -0.31
NKX3-1-202ENST00000523261 C2orf73Q8N5S3 287 aaPredicted RBP13.09□□□□□ -0.31
NKX3-1-202ENST00000523261 TEKT5Q96M29 485 aa13.09□□□□□ -0.31
NKX3-1-202ENST00000523261 MENTQ9BUN1 341 aa13.09□□□□□ -0.31
NKX3-1-202ENST00000523261 SLC6A16Q9GZN6 736 aa13.09□□□□□ -0.31
NKX3-1-202ENST00000523261 FAM96AQ9H5X1 160 aa13.09□□□□□ -0.31
NKX3-1-202ENST00000523261 KCNK13Q9HB14 408 aa13.09□□□□□ -0.31
NKX3-1-202ENST00000523261 MKKSQ9NPJ1 570 aaPredicted RBP13.09□□□□□ -0.31
NKX3-1-202ENST00000523261 PLSCR2Q9NRY7 297 aa13.09□□□□□ -0.31
NKX3-1-202ENST00000523261 IP6K2Q9UHH9 426 aa13.09□□□□□ -0.31
NKX3-1-202ENST00000523261 CBLCQ9ULV8 474 aa13.09□□□□□ -0.31
NKX3-1-202ENST00000523261 ALG6Q9Y672 507 aa13.09□□□□□ -0.31
NKX3-1-202ENST00000523261 FAM169AQ9Y6X4 670 aa13.09□□□□□ -0.31
NKX3-1-202ENST00000523261 ZNF407Q9C0G0 2248 aa13.09□□□□□ -0.31
NKX3-1-202ENST00000523261 CHD3Q12873 2000 aaKnown RBP13.08□□□□□ -0.31
NKX3-1-202ENST00000523261 LIN7AO14910 233 aaPredicted RBP13.08□□□□□ -0.32
NKX3-1-202ENST00000523261 TFECO14948 347 aaPredicted RBP13.08□□□□□ -0.32
NKX3-1-202ENST00000523261 CDC40O60508 579 aaKnown RBP eCLIP13.08□□□□□ -0.32
NKX3-1-202ENST00000523261 GSTM1P09488 218 aa13.08□□□□□ -0.32
NKX3-1-202ENST00000523261 CD53P19397 219 aa13.08□□□□□ -0.32
NKX3-1-202ENST00000523261 PTPN3P26045 913 aa13.08□□□□□ -0.32
NKX3-1-202ENST00000523261 ZFP36L2P47974 494 aaKnown RBP13.08□□□□□ -0.32
NKX3-1-202ENST00000523261 GSTM4Q03013 218 aa13.08□□□□□ -0.32
NKX3-1-202ENST00000523261 FLYWCH1Q4VC44 716 aa13.08□□□□□ -0.32
NKX3-1-202ENST00000523261 ZNF468Q5VIY5 522 aaPredicted RBP13.08□□□□□ -0.32
NKX3-1-202ENST00000523261 CDKAL1Q5VV42 579 aa13.08□□□□□ -0.32
NKX3-1-202ENST00000523261 ZNF571Q7Z3V5 609 aaPredicted RBP13.08□□□□□ -0.32
NKX3-1-202ENST00000523261 TAX1BP1Q86VP1 789 aa13.08□□□□□ -0.32
NKX3-1-202ENST00000523261 ZNF227Q86WZ6 799 aa13.08□□□□□ -0.32
NKX3-1-202ENST00000523261 CPNE8Q86YQ8 564 aa13.08□□□□□ -0.32
NKX3-1-202ENST00000523261 MAP7D3Q8IWC1 876 aa13.08□□□□□ -0.32
NKX3-1-202ENST00000523261 ZC3H7AQ8IWR0 971 aaKnown RBP13.08□□□□□ -0.32
NKX3-1-202ENST00000523261 CLDN19Q8N6F1 224 aa13.08□□□□□ -0.32
NKX3-1-202ENST00000523261 POGLUT1Q8NBL1 392 aa13.08□□□□□ -0.32
NKX3-1-202ENST00000523261 SLC22A18Q96BI1 424 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms