RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 BCAP31P51572 246 aa7.68□□□□□ -1.18
LIMCH1-219ENST00000514096 GFERP55789 205 aa7.68□□□□□ -1.18
LIMCH1-219ENST00000514096 NCALDP61601 193 aa7.68□□□□□ -1.18
LIMCH1-219ENST00000514096 SRSF6Q13247 344 aaKnown RBP7.68□□□□□ -1.18
LIMCH1-219ENST00000514096 THOC5Q13769 683 aaKnown RBP7.68□□□□□ -1.18
LIMCH1-219ENST00000514096 PRKD1Q15139 912 aaPredicted RBP7.68□□□□□ -1.18
LIMCH1-219ENST00000514096 AKIRIN2Q53H80 203 aa7.68□□□□□ -1.18
LIMCH1-219ENST00000514096 FASTKD1Q53R41 847 aaKnown RBP7.68□□□□□ -1.18
LIMCH1-219ENST00000514096 AFMIDQ63HM1 303 aa7.68□□□□□ -1.18
LIMCH1-219ENST00000514096 CYP20A1Q6UW02 462 aa7.68□□□□□ -1.18
LIMCH1-219ENST00000514096 C6orf89Q6UWU4 347 aa7.68□□□□□ -1.18
LIMCH1-219ENST00000514096 AKAP14Q86UN6 197 aa7.68□□□□□ -1.18
LIMCH1-219ENST00000514096 PIM3Q86V86 326 aa7.68□□□□□ -1.18
LIMCH1-219ENST00000514096 IL22RA1Q8N6P7 574 aa7.68□□□□□ -1.18
LIMCH1-219ENST00000514096 GIMAP5Q96F15 307 aa7.68□□□□□ -1.18
LIMCH1-219ENST00000514096 MED30Q96HR3 178 aa7.68□□□□□ -1.18
LIMCH1-219ENST00000514096 C9orf72Q96LT7 481 aa7.68□□□□□ -1.18
LIMCH1-219ENST00000514096 COPS8Q99627 209 aa7.68□□□□□ -1.18
LIMCH1-219ENST00000514096 C20orf96Q9NUD7 363 aaPredicted RBP7.68□□□□□ -1.18
LIMCH1-219ENST00000514096 MAP10Q9P2G4 905 aa7.68□□□□□ -1.18
LIMCH1-219ENST00000514096 DAPK2Q9UIK4 370 aa7.68□□□□□ -1.18
LIMCH1-219ENST00000514096 VPS4AQ9UN37 437 aa7.68□□□□□ -1.18
LIMCH1-219ENST00000514096 H0YJX3 145 aa7.68□□□□□ -1.18
LIMCH1-219ENST00000514096 PPM1DO15297 605 aa7.68□□□□□ -1.18
LIMCH1-219ENST00000514096 HTRA2O43464 458 aaPredicted RBP7.68□□□□□ -1.18
LIMCH1-219ENST00000514096 SERPIND1P05546 499 aa7.68□□□□□ -1.18
LIMCH1-219ENST00000514096 HTR7P34969 479 aa7.68□□□□□ -1.18
LIMCH1-219ENST00000514096 HSD17B2P37059 387 aa7.68□□□□□ -1.18
LIMCH1-219ENST00000514096 GABREP78334 506 aa7.68□□□□□ -1.18
LIMCH1-219ENST00000514096 DHX34Q14147 1143 aaKnown RBP7.68□□□□□ -1.18
LIMCH1-219ENST00000514096 INAVAQ3KP66 663 aa7.68□□□□□ -1.18
LIMCH1-219ENST00000514096 METTL11BQ5VVY1 283 aa7.68□□□□□ -1.18
LIMCH1-219ENST00000514096 DENND6AQ8IWF6 608 aa7.68□□□□□ -1.18
LIMCH1-219ENST00000514096 LNX2Q8N448 690 aa7.68□□□□□ -1.18
LIMCH1-219ENST00000514096 ZCCHC14Q8WYQ9 949 aaKnown RBP7.68□□□□□ -1.18
LIMCH1-219ENST00000514096 TSGA13Q96PP4 275 aa7.68□□□□□ -1.18
LIMCH1-219ENST00000514096 NDOR1Q9UHB4 597 aa7.68□□□□□ -1.18
LIMCH1-219ENST00000514096 ERVK-19Q9WJR5 959 aa7.68□□□□□ -1.18
LIMCH1-219ENST00000514096 UTP11Q9Y3A2 253 aaKnown RBP7.68□□□□□ -1.18
LIMCH1-219ENST00000514096 NYNRINQ9P2P1 1898 aaKnown RBP7.68□□□□□ -1.18
LIMCH1-219ENST00000514096 AKAP6Q13023 2319 aa7.68□□□□□ -1.18
LIMCH1-219ENST00000514096 A8MUA0 341 aa7.68□□□□□ -1.18
LIMCH1-219ENST00000514096 SLC7A4O43246 635 aa7.68□□□□□ -1.18
LIMCH1-219ENST00000514096 MTSS1O43312 755 aa7.68□□□□□ -1.18
LIMCH1-219ENST00000514096 TNFSF14O43557 240 aa7.68□□□□□ -1.18
LIMCH1-219ENST00000514096 RFPL3O75679 317 aa7.68□□□□□ -1.18
LIMCH1-219ENST00000514096 SCO1O75880 301 aa7.68□□□□□ -1.18
LIMCH1-219ENST00000514096 DNAJB5O75953 348 aa7.68□□□□□ -1.18
LIMCH1-219ENST00000514096 SRP72O76094 671 aaKnown RBP7.68□□□□□ -1.18
LIMCH1-219ENST00000514096 TNFSF15O95150 251 aa7.68□□□□□ -1.18
LIMCH1-219ENST00000514096 CLPTM1O96005 669 aa7.68□□□□□ -1.18
LIMCH1-219ENST00000514096 GOT2P00505 430 aaKnown RBP7.68□□□□□ -1.18
LIMCH1-219ENST00000514096 ABCB1P08183 1280 aaPredicted RBP7.68□□□□□ -1.18
LIMCH1-219ENST00000514096 ALOX5P09917 674 aa7.68□□□□□ -1.18
LIMCH1-219ENST00000514096 CBX5P45973 191 aa7.68□□□□□ -1.18
LIMCH1-219ENST00000514096 STC1P52823 247 aa7.68□□□□□ -1.18
LIMCH1-219ENST00000514096 RAPSNQ13702 412 aa7.68□□□□□ -1.18
LIMCH1-219ENST00000514096 TUBB2AQ13885 445 aa7.68□□□□□ -1.18
LIMCH1-219ENST00000514096 GLE1Q53GS7 698 aaKnown RBP7.68□□□□□ -1.18
LIMCH1-219ENST00000514096 IZUMO3Q5VZ72 239 aa7.68□□□□□ -1.18
LIMCH1-219ENST00000514096 WDR93Q6P2C0 686 aa7.68□□□□□ -1.18
LIMCH1-219ENST00000514096 MACC1Q6ZN28 852 aa7.68□□□□□ -1.18
LIMCH1-219ENST00000514096 TMPRSS9Q7Z410 1059 aa7.68□□□□□ -1.18
LIMCH1-219ENST00000514096 ABI3BPQ7Z7G0 1075 aa7.68□□□□□ -1.18
LIMCH1-219ENST00000514096 AMZ2Q86W34 360 aa7.68□□□□□ -1.18
LIMCH1-219ENST00000514096 IFT20Q8IY31 132 aa7.68□□□□□ -1.18
LIMCH1-219ENST00000514096 TUBB2BQ9BVA1 445 aa7.68□□□□□ -1.18
LIMCH1-219ENST00000514096 GSDMCQ9BYG8 508 aa7.68□□□□□ -1.18
LIMCH1-219ENST00000514096 CAB39Q9Y376 341 aaPredicted RBP7.68□□□□□ -1.18
LIMCH1-219ENST00000514096 NCF1BA6NI72 391 aaPredicted RBP7.67□□□□□ -1.18
LIMCH1-219ENST00000514096 NCF1CA8MVU1 366 aaPredicted RBP7.67□□□□□ -1.18
LIMCH1-219ENST00000514096 FFAR3O14843 346 aa7.67□□□□□ -1.18
LIMCH1-219ENST00000514096 GPR42O15529 346 aa7.67□□□□□ -1.18
LIMCH1-219ENST00000514096 NTRK1P04629 796 aa7.67□□□□□ -1.18
LIMCH1-219ENST00000514096 NCF1P14598 390 aaPredicted RBP7.67□□□□□ -1.18
LIMCH1-219ENST00000514096 NME1P15531 152 aaKnown RBP7.67□□□□□ -1.18
LIMCH1-219ENST00000514096 NR4A2P43354 598 aa7.67□□□□□ -1.18
LIMCH1-219ENST00000514096 PFN3P60673 137 aa7.67□□□□□ -1.18
LIMCH1-219ENST00000514096 OLR1P78380 273 aa7.67□□□□□ -1.18
LIMCH1-219ENST00000514096 IFI35P80217 286 aaPredicted RBP7.67□□□□□ -1.18
LIMCH1-219ENST00000514096 ZMYND11Q15326 602 aa7.67□□□□□ -1.18
LIMCH1-219ENST00000514096 MAPK11Q15759 364 aa7.67□□□□□ -1.18
LIMCH1-219ENST00000514096 ZNF470Q6ECI4 717 aa7.67□□□□□ -1.18
LIMCH1-219ENST00000514096 PGM2L1Q6PCE3 622 aa7.67□□□□□ -1.18
LIMCH1-219ENST00000514096 KYAT3Q6YP21 454 aaKnown RBP7.67□□□□□ -1.18
LIMCH1-219ENST00000514096 CCDC28AQ8IWP9 274 aa7.67□□□□□ -1.18
LIMCH1-219ENST00000514096 ARL14Q8N4G2 192 aa7.67□□□□□ -1.18
LIMCH1-219ENST00000514096 LSM14AQ8ND56 463 aaKnown RBP7.67□□□□□ -1.18
LIMCH1-219ENST00000514096 MAML1Q92585 1016 aa7.67□□□□□ -1.18
LIMCH1-219ENST00000514096 RSC1A1Q92681 617 aa7.67□□□□□ -1.18
LIMCH1-219ENST00000514096 FCRL5Q96RD9 977 aa7.67□□□□□ -1.18
LIMCH1-219ENST00000514096 MCCC2Q9HCC0 563 aa7.67□□□□□ -1.18
LIMCH1-219ENST00000514096 IARS2Q9NSE4 1012 aaKnown RBP7.67□□□□□ -1.18
LIMCH1-219ENST00000514096 MARCH4Q9P2E8 410 aaPredicted RBP7.67□□□□□ -1.18
LIMCH1-219ENST00000514096 TRHDEQ9UKU6 1024 aa7.67□□□□□ -1.18
LIMCH1-219ENST00000514096 LRRC42Q9Y546 428 aa7.67□□□□□ -1.18
LIMCH1-219ENST00000514096 PCDH15Q96QU1 1955 aa7.67□□□□□ -1.18
LIMCH1-219ENST00000514096 POM121CA8CG34 1229 aa7.67□□□□□ -1.18
LIMCH1-219ENST00000514096 J3QRK9 145 aa7.67□□□□□ -1.18
LIMCH1-219ENST00000514096 K7EPI3 171 aa7.67□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms