RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 MTSS1LQ765P7 747 aa8.2□□□□□ -1.1
LIMCH1-216ENST00000512820 ZNF598Q86UK7 904 aaKnown RBP8.2□□□□□ -1.1
LIMCH1-216ENST00000512820 HS3ST5Q8IZT8 346 aa8.2□□□□□ -1.1
LIMCH1-216ENST00000512820 LGALS12Q96DT0 336 aa8.2□□□□□ -1.1
LIMCH1-216ENST00000512820 CMTM7Q96FZ5 175 aa8.2□□□□□ -1.1
LIMCH1-216ENST00000512820 DMRTB1Q96MA1 342 aa8.2□□□□□ -1.1
LIMCH1-216ENST00000512820 GPR78Q96P69 363 aa8.2□□□□□ -1.1
LIMCH1-216ENST00000512820 ATOH8Q96SQ7 321 aa8.2□□□□□ -1.1
LIMCH1-216ENST00000512820 HERC2P3Q9BVR0 1158 aa8.2□□□□□ -1.1
LIMCH1-216ENST00000512820 PTGFRNQ9P2B2 879 aa8.2□□□□□ -1.1
LIMCH1-216ENST00000512820 MAP10Q9P2G4 905 aa8.2□□□□□ -1.1
LIMCH1-216ENST00000512820 TRPS1Q9UHF7 1281 aa8.2□□□□□ -1.1
LIMCH1-216ENST00000512820 CFL2Q9Y281 166 aa8.2□□□□□ -1.1
LIMCH1-216ENST00000512820 KRT87PA6NCN2 255 aa8.19□□□□□ -1.1
LIMCH1-216ENST00000512820 UBFD1O14562 309 aaKnown RBP8.19□□□□□ -1.1
LIMCH1-216ENST00000512820 GRM6O15303 877 aa8.19□□□□□ -1.1
LIMCH1-216ENST00000512820 MITFO75030 526 aaPredicted RBP8.19□□□□□ -1.1
LIMCH1-216ENST00000512820 ZNF623O75123 536 aa8.19□□□□□ -1.1
LIMCH1-216ENST00000512820 MTX2O75431 263 aa8.19□□□□□ -1.1
LIMCH1-216ENST00000512820 GSRP00390 522 aa8.19□□□□□ -1.1
LIMCH1-216ENST00000512820 RING1Q06587 406 aa8.19□□□□□ -1.1
LIMCH1-216ENST00000512820 GPR17Q13304 367 aa8.19□□□□□ -1.1
LIMCH1-216ENST00000512820 FBXO43Q4G163 708 aa8.19□□□□□ -1.1
LIMCH1-216ENST00000512820 PIWIL3Q7Z3Z3 882 aaKnown RBP8.19□□□□□ -1.1
LIMCH1-216ENST00000512820 FUNDC1Q8IVP5 155 aa8.19□□□□□ -1.1
LIMCH1-216ENST00000512820 CDK20Q8IZL9 346 aa8.19□□□□□ -1.1
LIMCH1-216ENST00000512820 C2orf73Q8N5S3 287 aaPredicted RBP8.19□□□□□ -1.1
LIMCH1-216ENST00000512820 C1orf52Q8N6N3 182 aaKnown RBP8.19□□□□□ -1.1
LIMCH1-216ENST00000512820 ZNF557Q8N988 423 aaPredicted RBP8.19□□□□□ -1.1
LIMCH1-216ENST00000512820 TEX47Q8TBZ9 253 aa8.19□□□□□ -1.1
LIMCH1-216ENST00000512820 OMA1Q96E52 524 aa8.19□□□□□ -1.1
LIMCH1-216ENST00000512820 HTATIP2Q9BUP3 242 aa8.19□□□□□ -1.1
LIMCH1-216ENST00000512820 CSNK1G1Q9HCP0 422 aa8.19□□□□□ -1.1
LIMCH1-216ENST00000512820 PAK1IP1Q9NWT1 392 aaPredicted RBP8.19□□□□□ -1.1
LIMCH1-216ENST00000512820 ZNF510Q9Y2H8 683 aa8.19□□□□□ -1.1
LIMCH1-216ENST00000512820 A0A1B0GTW7 788 aa8.19□□□□□ -1.1
LIMCH1-216ENST00000512820 GLTPD2A6NH11 291 aa8.19□□□□□ -1.1
LIMCH1-216ENST00000512820 ERAL1O75616 437 aaKnown RBP8.19□□□□□ -1.1
LIMCH1-216ENST00000512820 PCDH8O95206 1070 aa8.19□□□□□ -1.1
LIMCH1-216ENST00000512820 POP4O95707 220 aaKnown RBP8.19□□□□□ -1.1
LIMCH1-216ENST00000512820 CHRM5P08912 532 aaPredicted RBP8.19□□□□□ -1.1
LIMCH1-216ENST00000512820 CLTBP09497 229 aa8.19□□□□□ -1.1
LIMCH1-216ENST00000512820 PRKAR1AP10644 381 aa8.19□□□□□ -1.1
LIMCH1-216ENST00000512820 AGXTP21549 392 aa8.19□□□□□ -1.1
LIMCH1-216ENST00000512820 FEN1P39748 380 aaKnown RBP8.19□□□□□ -1.1
LIMCH1-216ENST00000512820 PTSQ03393 145 aa8.19□□□□□ -1.1
LIMCH1-216ENST00000512820 SCARB2Q14108 478 aa8.19□□□□□ -1.1
LIMCH1-216ENST00000512820 CLCA4Q14CN2 919 aa8.19□□□□□ -1.1
LIMCH1-216ENST00000512820 SNAPC1Q16533 368 aa8.19□□□□□ -1.1
LIMCH1-216ENST00000512820 GTDC1Q4AE62 458 aa8.19□□□□□ -1.1
LIMCH1-216ENST00000512820 FAM92BQ6ZTR7 304 aa8.19□□□□□ -1.1
LIMCH1-216ENST00000512820 CHST9Q7L1S5 443 aa8.19□□□□□ -1.1
LIMCH1-216ENST00000512820 MFSD6LQ8IWD5 586 aa8.19□□□□□ -1.1
LIMCH1-216ENST00000512820 YAF2Q8IY57 180 aa8.19□□□□□ -1.1
LIMCH1-216ENST00000512820 SPARTQ8N0X7 666 aa8.19□□□□□ -1.1
LIMCH1-216ENST00000512820 XAGE5Q8WWM1 108 aa8.19□□□□□ -1.1
LIMCH1-216ENST00000512820 ANKHQ9HCJ1 492 aa8.19□□□□□ -1.1
LIMCH1-216ENST00000512820 ACTL7AQ9Y615 435 aa8.19□□□□□ -1.1
LIMCH1-216ENST00000512820 NEDD8-MDP1E9PL57 170 aa8.19□□□□□ -1.1
LIMCH1-216ENST00000512820 ACOX3O15254 700 aa8.19□□□□□ -1.1
LIMCH1-216ENST00000512820 ZW10O43264 779 aa8.19□□□□□ -1.1
LIMCH1-216ENST00000512820 PCDH7O60245 1069 aa8.19□□□□□ -1.1
LIMCH1-216ENST00000512820 SERPINI2O75830 405 aa8.19□□□□□ -1.1
LIMCH1-216ENST00000512820 SNX4O95219 450 aa8.19□□□□□ -1.1
LIMCH1-216ENST00000512820 SELPP16109 830 aa8.19□□□□□ -1.1
LIMCH1-216ENST00000512820 ANKRD26P1Q6NSI1 321 aa8.19□□□□□ -1.1
LIMCH1-216ENST00000512820 C9orf43Q8TAL5 461 aaPredicted RBP8.19□□□□□ -1.1
LIMCH1-216ENST00000512820 CRELD1Q96HD1 420 aa8.19□□□□□ -1.1
LIMCH1-216ENST00000512820 COL21A1Q96P44 957 aa8.19□□□□□ -1.1
LIMCH1-216ENST00000512820 IL4I1Q96RQ9 567 aa8.19□□□□□ -1.1
LIMCH1-216ENST00000512820 MMP27Q9H306 513 aa8.19□□□□□ -1.1
LIMCH1-216ENST00000512820 HMX1Q9NP08 348 aaPredicted RBP8.19□□□□□ -1.1
LIMCH1-216ENST00000512820 POFUT2Q9Y2G5 429 aa8.19□□□□□ -1.1
LIMCH1-216ENST00000512820 OARD1Q9Y530 152 aa8.19□□□□□ -1.1
LIMCH1-216ENST00000512820 NME7Q9Y5B8 376 aa8.19□□□□□ -1.1
LIMCH1-216ENST00000512820 WNT9AO14904 365 aa8.19□□□□□ -1.1
LIMCH1-216ENST00000512820 CBSLP0DN79 551 aa8.19□□□□□ -1.1
LIMCH1-216ENST00000512820 DCKP27707 260 aa8.19□□□□□ -1.1
LIMCH1-216ENST00000512820 NOS3P29474 1203 aa8.19□□□□□ -1.1
LIMCH1-216ENST00000512820 CBSP35520 551 aa8.19□□□□□ -1.1
LIMCH1-216ENST00000512820 DCTP40126 519 aa8.19□□□□□ -1.1
LIMCH1-216ENST00000512820 MAGEA8P43361 318 aa8.19□□□□□ -1.1
LIMCH1-216ENST00000512820 RPP38P78345 283 aaKnown RBP8.19□□□□□ -1.1
LIMCH1-216ENST00000512820 TGM3Q08188 693 aa8.19□□□□□ -1.1
LIMCH1-216ENST00000512820 SEMA3AQ14563 771 aa8.19□□□□□ -1.1
LIMCH1-216ENST00000512820 MBOAT1Q6ZNC8 495 aa8.19□□□□□ -1.1
LIMCH1-216ENST00000512820 SPRED1Q7Z699 444 aa8.19□□□□□ -1.1
LIMCH1-216ENST00000512820 IGFN1Q86VF2 1251 aa8.19□□□□□ -1.1
LIMCH1-216ENST00000512820 DBF4BQ8NFT6 615 aa8.19□□□□□ -1.1
LIMCH1-216ENST00000512820 MYOCQ99972 504 aa8.19□□□□□ -1.1
LIMCH1-216ENST00000512820 FAIM2Q9BWQ8 316 aa8.19□□□□□ -1.1
LIMCH1-216ENST00000512820 FAM120CQ9NX05 1096 aaKnown RBP8.19□□□□□ -1.1
LIMCH1-216ENST00000512820 VAPAQ9P0L0 249 aa8.19□□□□□ -1.1
LIMCH1-216ENST00000512820 PCDHGA8Q9Y5G5 932 aa8.19□□□□□ -1.1
LIMCH1-216ENST00000512820 FAM240BA0A1B0GVZ2 78 aa8.18□□□□□ -1.1
LIMCH1-216ENST00000512820 M0QX08 132 aa8.18□□□□□ -1.1
LIMCH1-216ENST00000512820 SAP18O00422 153 aaKnown RBP8.18□□□□□ -1.1
LIMCH1-216ENST00000512820 PDYNP01213 254 aa8.18□□□□□ -1.1
LIMCH1-216ENST00000512820 ITGB1P05556 798 aa8.18□□□□□ -1.1
LIMCH1-216ENST00000512820 ARNTP27540 789 aa8.18□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms