RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 GSTO2Q9H4Y5 243 aa11.74□□□□□ -0.53
LIMCH1-213ENST00000511496 GPBP1L1Q9HC44 474 aaPredicted RBP11.74□□□□□ -0.53
LIMCH1-213ENST00000511496 VNN3Q9NY84 501 aa11.74□□□□□ -0.53
LIMCH1-213ENST00000511496 COA4Q9NYJ1 87 aa11.74□□□□□ -0.53
LIMCH1-213ENST00000511496 A0A087WZ62 844 aa11.74□□□□□ -0.53
LIMCH1-213ENST00000511496 PRAMEF33A0A0G2JMD5 474 aa11.74□□□□□ -0.53
LIMCH1-213ENST00000511496 INMT-MINDY4F8WBC2 141 aa11.74□□□□□ -0.53
LIMCH1-213ENST00000511496 ORC5O43913 435 aa11.74□□□□□ -0.53
LIMCH1-213ENST00000511496 PRAMEF10O60809 474 aa11.74□□□□□ -0.53
LIMCH1-213ENST00000511496 SIX3O95343 332 aaPredicted RBP11.74□□□□□ -0.53
LIMCH1-213ENST00000511496 DAPP51397 102 aa11.74□□□□□ -0.53
LIMCH1-213ENST00000511496 POLR2JP52435 117 aaKnown RBP11.74□□□□□ -0.53
LIMCH1-213ENST00000511496 DNAJB13P59910 316 aa11.74□□□□□ -0.53
LIMCH1-213ENST00000511496 ZNF124Q15973 351 aa11.74□□□□□ -0.53
LIMCH1-213ENST00000511496 SWI5Q1ZZU3 235 aa11.74□□□□□ -0.53
LIMCH1-213ENST00000511496 COL28A1Q2UY09 1125 aa11.74□□□□□ -0.53
LIMCH1-213ENST00000511496 GCNT7Q6ZNI0 430 aa11.74□□□□□ -0.53
LIMCH1-213ENST00000511496 GALNT10Q86SR1 603 aa11.74□□□□□ -0.53
LIMCH1-213ENST00000511496 OR2T12Q8NG77 320 aa11.74□□□□□ -0.53
LIMCH1-213ENST00000511496 AHCYL2Q96HN2 611 aaKnown RBP11.74□□□□□ -0.53
LIMCH1-213ENST00000511496 SORCS2Q96PQ0 1159 aa11.74□□□□□ -0.53
LIMCH1-213ENST00000511496 CGRRF1Q99675 332 aa11.74□□□□□ -0.53
LIMCH1-213ENST00000511496 MED28Q9H204 178 aa11.74□□□□□ -0.53
LIMCH1-213ENST00000511496 ALG9Q9H6U8 611 aa11.74□□□□□ -0.53
LIMCH1-213ENST00000511496 ERVK-19Q9WJR5 959 aa11.74□□□□□ -0.53
LIMCH1-213ENST00000511496 MAB21L2Q9Y586 359 aa11.74□□□□□ -0.53
LIMCH1-213ENST00000511496 COL24A1Q17RW2 1714 aa11.74□□□□□ -0.53
LIMCH1-213ENST00000511496 SMCHD1A6NHR9 2005 aa11.74□□□□□ -0.53
LIMCH1-213ENST00000511496 INPPL1O15357 1258 aa11.74□□□□□ -0.53
LIMCH1-213ENST00000511496 ST8SIA5O15466 376 aa11.74□□□□□ -0.53
LIMCH1-213ENST00000511496 TRIM3O75382 744 aaPredicted RBP11.74□□□□□ -0.53
LIMCH1-213ENST00000511496 SLC22A3O75751 556 aa11.74□□□□□ -0.53
LIMCH1-213ENST00000511496 TOXO94900 526 aa11.74□□□□□ -0.53
LIMCH1-213ENST00000511496 ITGAMP11215 1152 aa11.74□□□□□ -0.53
LIMCH1-213ENST00000511496 GGT1P19440 569 aa11.74□□□□□ -0.53
LIMCH1-213ENST00000511496 EFNA1P20827 205 aaPredicted RBP11.74□□□□□ -0.53
LIMCH1-213ENST00000511496 ADAM15Q13444 863 aa11.74□□□□□ -0.53
LIMCH1-213ENST00000511496 GPR153Q6NV75 609 aa11.74□□□□□ -0.53
LIMCH1-213ENST00000511496 BRINP3Q76B58 766 aa11.74□□□□□ -0.53
LIMCH1-213ENST00000511496 CEP68Q76N32 757 aa11.74□□□□□ -0.53
LIMCH1-213ENST00000511496 LRRTM3Q86VH5 581 aa11.74□□□□□ -0.53
LIMCH1-213ENST00000511496 PYROXD2Q8N2H3 581 aa11.74□□□□□ -0.53
LIMCH1-213ENST00000511496 PGBD5Q8N414 524 aa11.74□□□□□ -0.53
LIMCH1-213ENST00000511496 SERPINB11Q96P15 392 aa11.74□□□□□ -0.53
LIMCH1-213ENST00000511496 C3orf14Q9HBI5 128 aa11.74□□□□□ -0.53
LIMCH1-213ENST00000511496 MRM3Q9HC36 420 aaKnown RBP11.74□□□□□ -0.53
LIMCH1-213ENST00000511496 HCN3Q9P1Z3 774 aa11.74□□□□□ -0.53
LIMCH1-213ENST00000511496 POLG2Q9UHN1 485 aa11.74□□□□□ -0.53
LIMCH1-213ENST00000511496 CMAHPQ9Y471 501 aa11.74□□□□□ -0.53
LIMCH1-213ENST00000511496 A0A1B0GVM2 712 aa11.73□□□□□ -0.53
LIMCH1-213ENST00000511496 KPNA5O15131 536 aa11.73□□□□□ -0.53
LIMCH1-213ENST00000511496 GOT1P17174 413 aa11.73□□□□□ -0.53
LIMCH1-213ENST00000511496 RPP38P78345 283 aaKnown RBP11.73□□□□□ -0.53
LIMCH1-213ENST00000511496 CYP4F8P98187 520 aa11.73□□□□□ -0.53
LIMCH1-213ENST00000511496 NRG1Q02297 640 aaPredicted RBP11.73□□□□□ -0.53
LIMCH1-213ENST00000511496 NKX1-1Q15270 411 aaPredicted RBP11.73□□□□□ -0.53
LIMCH1-213ENST00000511496 SYPL2Q5VXT5 272 aa11.73□□□□□ -0.53
LIMCH1-213ENST00000511496 RNF180Q86T96 592 aa11.73□□□□□ -0.53
LIMCH1-213ENST00000511496 SULF1Q8IWU6 871 aa11.73□□□□□ -0.53
LIMCH1-213ENST00000511496 TP53INP2Q8IXH6 220 aa11.73□□□□□ -0.53
LIMCH1-213ENST00000511496 ATP6V1C2Q8NEY4 427 aa11.73□□□□□ -0.53
LIMCH1-213ENST00000511496 LPCAT1Q8NF37 534 aa11.73□□□□□ -0.53
LIMCH1-213ENST00000511496 COPS5Q92905 334 aa11.73□□□□□ -0.53
LIMCH1-213ENST00000511496 LPPQ93052 612 aa11.73□□□□□ -0.53
LIMCH1-213ENST00000511496 PELOQ9BRX2 385 aaKnown RBP11.73□□□□□ -0.53
LIMCH1-213ENST00000511496 OLA1Q9NTK5 396 aaKnown RBP11.73□□□□□ -0.53
LIMCH1-213ENST00000511496 TNS2Q63HR2 1409 aa11.73□□□□□ -0.53
LIMCH1-213ENST00000511496 A0A075B6Q4 140 aa11.73□□□□□ -0.53
LIMCH1-213ENST00000511496 MED7O43513 233 aa11.73□□□□□ -0.53
LIMCH1-213ENST00000511496 KDM4BO94953 1096 aa11.73□□□□□ -0.53
LIMCH1-213ENST00000511496 MYCLP12524 364 aaPredicted RBP11.73□□□□□ -0.53
LIMCH1-213ENST00000511496 MAPKAPK2P49137 400 aa11.73□□□□□ -0.53
LIMCH1-213ENST00000511496 HNMTP50135 292 aa11.73□□□□□ -0.53
LIMCH1-213ENST00000511496 DEFA5Q01523 94 aa11.73□□□□□ -0.53
LIMCH1-213ENST00000511496 SP4Q02446 784 aa11.73□□□□□ -0.53
LIMCH1-213ENST00000511496 UGT8Q16880 541 aa11.73□□□□□ -0.53
LIMCH1-213ENST00000511496 FBXO43Q4G163 708 aa11.73□□□□□ -0.53
LIMCH1-213ENST00000511496 SPOUT1Q5T280 376 aaKnown RBP11.73□□□□□ -0.53
LIMCH1-213ENST00000511496 CAPN13Q6MZZ7 669 aaPredicted RBP11.73□□□□□ -0.53
LIMCH1-213ENST00000511496 SLC16A13Q7RTY0 426 aa11.73□□□□□ -0.53
LIMCH1-213ENST00000511496 CCDC71Q8IV32 467 aaPredicted RBP11.73□□□□□ -0.53
LIMCH1-213ENST00000511496 OR8D4Q8NGM9 314 aa11.73□□□□□ -0.53
LIMCH1-213ENST00000511496 UTP15Q8TED0 518 aaKnown RBP11.73□□□□□ -0.53
LIMCH1-213ENST00000511496 MYDGFQ969H8 173 aa11.73□□□□□ -0.53
LIMCH1-213ENST00000511496 OR5M11Q96RB7 305 aa11.73□□□□□ -0.53
LIMCH1-213ENST00000511496 MRPL45Q9BRJ2 306 aaKnown RBP11.73□□□□□ -0.53
LIMCH1-213ENST00000511496 ZNF670Q9BS34 389 aa11.73□□□□□ -0.53
LIMCH1-213ENST00000511496 HAPLN2Q9GZV7 340 aa11.73□□□□□ -0.53
LIMCH1-213ENST00000511496 PDP1Q9P0J1 537 aaPredicted RBP11.73□□□□□ -0.53
LIMCH1-213ENST00000511496 SLC22A7Q9Y694 548 aa11.73□□□□□ -0.53
LIMCH1-213ENST00000511496 DDX60LQ5H9U9 1706 aaKnown RBP11.73□□□□□ -0.53
LIMCH1-213ENST00000511496 A0A1W2PQL4 384 aaPredicted RBP11.73□□□□□ -0.53
LIMCH1-213ENST00000511496 FAM74A7A6NL05 159 aa11.73□□□□□ -0.53
LIMCH1-213ENST00000511496 AZIN1O14977 448 aa11.73□□□□□ -0.53
LIMCH1-213ENST00000511496 MICAL2O94851 1124 aa11.73□□□□□ -0.53
LIMCH1-213ENST00000511496 APOL3O95236 402 aa11.73□□□□□ -0.53
LIMCH1-213ENST00000511496 CHRM5P08912 532 aaPredicted RBP11.73□□□□□ -0.53
LIMCH1-213ENST00000511496 ITGB5P18084 799 aa11.73□□□□□ -0.53
LIMCH1-213ENST00000511496 APEX1P27695 318 aaKnown RBP11.73□□□□□ -0.53
LIMCH1-213ENST00000511496 RORCP51449 518 aa11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms