RNA–Protein interactions for RNA: ENST00000511040.5

DDX41-212, Transcript of DEAD-box helicase 41, humanhuman

TSL 3

Gene DDX41, Length 721 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-212ENST00000511040 SLC12A2P55011 1212 aa13.41□□□□□ -0.26
DDX41-212ENST00000511040 RPS18P62269 152 aaKnown RBP13.41□□□□□ -0.26
DDX41-212ENST00000511040 SP140Q13342 867 aa13.41□□□□□ -0.26
DDX41-212ENST00000511040 USP10Q14694 798 aaKnown RBP13.41□□□□□ -0.26
DDX41-212ENST00000511040 SOWAHCQ53LP3 525 aaPredicted RBP13.41□□□□□ -0.26
DDX41-212ENST00000511040 TAF1BQ53T94 588 aaPredicted RBP13.41□□□□□ -0.26
DDX41-212ENST00000511040 ICE2Q659A1 982 aa13.41□□□□□ -0.26
DDX41-212ENST00000511040 LRRC56Q8IYG6 542 aaPredicted RBP13.41□□□□□ -0.26
DDX41-212ENST00000511040 DSELQ8IZU8 1212 aa13.41□□□□□ -0.26
DDX41-212ENST00000511040 ANKRD49Q8WVL7 239 aa13.41□□□□□ -0.26
DDX41-212ENST00000511040 TTC9Q92623 222 aa13.41□□□□□ -0.26
DDX41-212ENST00000511040 EXTL1Q92935 676 aa13.41□□□□□ -0.26
DDX41-212ENST00000511040 MED8Q96G25 268 aa13.41□□□□□ -0.26
DDX41-212ENST00000511040 CCDC138Q96M89 665 aa13.41□□□□□ -0.26
DDX41-212ENST00000511040 UBL7Q96S82 380 aaPredicted RBP13.41□□□□□ -0.26
DDX41-212ENST00000511040 RBBP8Q99708 897 aa13.41□□□□□ -0.26
DDX41-212ENST00000511040 SELENOSQ9BQE4 189 aa13.41□□□□□ -0.26
DDX41-212ENST00000511040 EFHD1Q9BUP0 239 aa13.41□□□□□ -0.26
DDX41-212ENST00000511040 ATG10Q9H0Y0 220 aa13.41□□□□□ -0.26
DDX41-212ENST00000511040 UTP6Q9NYH9 597 aaKnown RBP13.41□□□□□ -0.26
DDX41-212ENST00000511040 NINJ2Q9NZG7 142 aa13.41□□□□□ -0.26
DDX41-212ENST00000511040 MTRF1LQ9UGC7 380 aaKnown RBP13.41□□□□□ -0.26
DDX41-212ENST00000511040 CHD6Q8TD26 2715 aa13.4□□□□□ -0.26
DDX41-212ENST00000511040 LOC105369274A0A096LPK9 316 aa13.4□□□□□ -0.26
DDX41-212ENST00000511040 IGKV1-8A0A0C4DH67 115 aa13.4□□□□□ -0.26
DDX41-212ENST00000511040 LOC102723532A0A0G2JNH3 316 aa13.4□□□□□ -0.26
DDX41-212ENST00000511040 TARM1B6A8C7 271 aa13.4□□□□□ -0.26
DDX41-212ENST00000511040 CDC7O00311 574 aa13.4□□□□□ -0.26
DDX41-212ENST00000511040 GUCA1CO95843 209 aa13.4□□□□□ -0.26
DDX41-212ENST00000511040 HIST1H2AGP0C0S8 130 aaPredicted RBP13.4□□□□□ -0.26
DDX41-212ENST00000511040 HIST1H2ADP20671 130 aa13.4□□□□□ -0.26
DDX41-212ENST00000511040 ECHS1P30084 290 aa13.4□□□□□ -0.26
DDX41-212ENST00000511040 GMPRP36959 345 aa13.4□□□□□ -0.26
DDX41-212ENST00000511040 VSX2P58304 361 aaPredicted RBP13.4□□□□□ -0.26
DDX41-212ENST00000511040 TBPL1P62380 186 aa13.4□□□□□ -0.26
DDX41-212ENST00000511040 NFKB2Q00653 900 aa13.4□□□□□ -0.26
DDX41-212ENST00000511040 RHDQ02161 417 aa13.4□□□□□ -0.26
DDX41-212ENST00000511040 NAE1Q13564 534 aa13.4□□□□□ -0.26
DDX41-212ENST00000511040 ERV3-1Q14264 604 aa13.4□□□□□ -0.26
DDX41-212ENST00000511040 TBR1Q16650 682 aa13.4□□□□□ -0.26
DDX41-212ENST00000511040 GLE1Q53GS7 698 aaKnown RBP13.4□□□□□ -0.26
DDX41-212ENST00000511040 ZC3H12BQ5HYM0 836 aaKnown RBP13.4□□□□□ -0.26
DDX41-212ENST00000511040 FAM69BQ5VUD6 431 aa13.4□□□□□ -0.26
DDX41-212ENST00000511040 FRMPD2BQ6IN97 320 aa13.4□□□□□ -0.26
DDX41-212ENST00000511040 TLDC1Q6P9B6 456 aa13.4□□□□□ -0.26
DDX41-212ENST00000511040 AGTRAPQ6RW13 159 aa13.4□□□□□ -0.26
DDX41-212ENST00000511040 PCSK4Q6UW60 755 aa13.4□□□□□ -0.26
DDX41-212ENST00000511040 CYS1Q717R9 158 aa13.4□□□□□ -0.26
DDX41-212ENST00000511040 ADCK2Q7Z695 626 aa13.4□□□□□ -0.26
DDX41-212ENST00000511040 OR4N4Q8N0Y3 316 aa13.4□□□□□ -0.26
DDX41-212ENST00000511040 SPATA6LQ8N4H0 392 aa13.4□□□□□ -0.26
DDX41-212ENST00000511040 ZUFSPQ96AP4 578 aa13.4□□□□□ -0.26
DDX41-212ENST00000511040 HIST1H2AHQ96KK5 128 aa13.4□□□□□ -0.26
DDX41-212ENST00000511040 HIST1H2AJQ99878 128 aa13.4□□□□□ -0.26
DDX41-212ENST00000511040 H2AFJQ9BTM1 129 aa13.4□□□□□ -0.26
DDX41-212ENST00000511040 NDC1Q9BTX1 674 aa13.4□□□□□ -0.26
DDX41-212ENST00000511040 ACTL8Q9H568 366 aa13.4□□□□□ -0.26
DDX41-212ENST00000511040 CCDC177Q9NQR7 707 aaPredicted RBP13.4□□□□□ -0.26
DDX41-212ENST00000511040 CUEDC1Q9NWM3 386 aaPredicted RBP13.4□□□□□ -0.26
DDX41-212ENST00000511040 ARL15Q9NXU5 204 aa13.4□□□□□ -0.26
DDX41-212ENST00000511040 DHCR7Q9UBM7 475 aaKnown RBP13.4□□□□□ -0.26
DDX41-212ENST00000511040 SH2B3Q9UQQ2 575 aa13.4□□□□□ -0.26
DDX41-212ENST00000511040 AP1M2Q9Y6Q5 423 aa13.4□□□□□ -0.26
DDX41-212ENST00000511040 OR2A25A4D2G3 310 aa13.39□□□□□ -0.27
DDX41-212ENST00000511040 PABPN1LA6NDY0 278 aaKnown RBP13.39□□□□□ -0.27
DDX41-212ENST00000511040 CCNDBP1O95273 360 aa13.39□□□□□ -0.27
DDX41-212ENST00000511040 ACSL3O95573 720 aa13.39□□□□□ -0.27
DDX41-212ENST00000511040 EIF2S1P05198 315 aaKnown RBP13.39□□□□□ -0.27
DDX41-212ENST00000511040 HBQ1P09105 142 aa13.39□□□□□ -0.27
DDX41-212ENST00000511040 RHOXF2BP0C7M4 288 aa13.39□□□□□ -0.27
DDX41-212ENST00000511040 POU4F1Q01851 419 aa13.39□□□□□ -0.27
DDX41-212ENST00000511040 PRDX1Q06830 199 aaKnown RBP13.39□□□□□ -0.27
DDX41-212ENST00000511040 CDC20Q12834 499 aa13.39□□□□□ -0.27
DDX41-212ENST00000511040 SLC9A5Q14940 896 aa13.39□□□□□ -0.27
DDX41-212ENST00000511040 PRAMEF13Q5VWM6 474 aa13.39□□□□□ -0.27
DDX41-212ENST00000511040 FBXO42Q6P3S6 717 aa13.39□□□□□ -0.27
DDX41-212ENST00000511040 FAM198BQ6UWH4 519 aa13.39□□□□□ -0.27
DDX41-212ENST00000511040 SBSNQ6UWP8 590 aa13.39□□□□□ -0.27
DDX41-212ENST00000511040 PAQR7Q86WK9 346 aa13.39□□□□□ -0.27
DDX41-212ENST00000511040 PLD3Q8IV08 490 aa13.39□□□□□ -0.27
DDX41-212ENST00000511040 NKAPQ8N5F7 415 aaKnown RBP13.39□□□□□ -0.27
DDX41-212ENST00000511040 PDLIM5Q96HC4 596 aaKnown RBP13.39□□□□□ -0.27
DDX41-212ENST00000511040 LRFN5Q96NI6 719 aa13.39□□□□□ -0.27
DDX41-212ENST00000511040 FMO2Q99518 471 aa13.39□□□□□ -0.27
DDX41-212ENST00000511040 GPR22Q99680 433 aa13.39□□□□□ -0.27
DDX41-212ENST00000511040 RHOXF2Q9BQY4 288 aa13.39□□□□□ -0.27
DDX41-212ENST00000511040 PLCD4Q9BRC7 762 aa13.39□□□□□ -0.27
DDX41-212ENST00000511040 TRIM54Q9BYV2 358 aa13.39□□□□□ -0.27
DDX41-212ENST00000511040 SYNPO2LQ9H987 977 aa13.39□□□□□ -0.27
DDX41-212ENST00000511040 GPAMQ9HCL2 828 aa13.39□□□□□ -0.27
DDX41-212ENST00000511040 KCND3Q9UK17 655 aa13.39□□□□□ -0.27
DDX41-212ENST00000511040 KLK4Q9Y5K2 254 aa13.39□□□□□ -0.27
DDX41-212ENST00000511040 LOC400499M0QZD8 3231 aa13.39□□□□□ -0.27
DDX41-212ENST00000511040 FAM208BQ5VWN6 2430 aa13.39□□□□□ -0.27
DDX41-212ENST00000511040 CDC14CA4D256 554 aa13.38□□□□□ -0.27
DDX41-212ENST00000511040 C21orf140B9A014 251 aa13.38□□□□□ -0.27
DDX41-212ENST00000511040 H0YGG7 62 aa13.38□□□□□ -0.27
DDX41-212ENST00000511040 H7BY64 318 aa13.38□□□□□ -0.27
DDX41-212ENST00000511040 ERVH48-1M5A8F1 160 aa13.38□□□□□ -0.27
DDX41-212ENST00000511040 ATXN7O15265 892 aaPredicted RBP13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms