RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 DDX58O95786 925 aaKnown RBP2.04□□□□□ -2.08
NUP54-208ENST00000508604 AOC1P19801 751 aa2.04□□□□□ -2.08
NUP54-208ENST00000508604 PTMSP20962 102 aa2.04□□□□□ -2.08
NUP54-208ENST00000508604 LMOD3Q0VAK6 560 aa2.04□□□□□ -2.08
NUP54-208ENST00000508604 CRYMQ14894 314 aa2.04□□□□□ -2.08
NUP54-208ENST00000508604 ZNF146Q15072 292 aa2.04□□□□□ -2.08
NUP54-208ENST00000508604 PTPN14Q15678 1187 aa2.04□□□□□ -2.08
NUP54-208ENST00000508604 AGAP7PQ5VUJ5 663 aa2.04□□□□□ -2.08
NUP54-208ENST00000508604 C11orf63Q6NUN7 778 aa2.04□□□□□ -2.08
NUP54-208ENST00000508604 FIGLAQ6QHK4 219 aa2.04□□□□□ -2.08
NUP54-208ENST00000508604 REG3GQ6UW15 175 aa2.04□□□□□ -2.08
NUP54-208ENST00000508604 OR52B6Q8NGF0 335 aa2.04□□□□□ -2.08
NUP54-208ENST00000508604 MRAPQ8TCY5 172 aa2.04□□□□□ -2.08
NUP54-208ENST00000508604 DHX58Q96C10 678 aa2.04□□□□□ -2.08
NUP54-208ENST00000508604 CMTM3Q96MX0 182 aa2.04□□□□□ -2.08
NUP54-208ENST00000508604 KIFC3Q9BVG8 833 aa2.04□□□□□ -2.08
NUP54-208ENST00000508604 DIAPH3Q9NSV4 1193 aa2.04□□□□□ -2.08
NUP54-208ENST00000508604 STK26Q9P289 416 aa2.04□□□□□ -2.08
NUP54-208ENST00000508604 BAIAP2L1Q9UHR4 511 aa2.04□□□□□ -2.08
NUP54-208ENST00000508604 PCDH11YQ9BZA8 1340 aa2.04□□□□□ -2.08
NUP54-208ENST00000508604 A8MZ25 164 aa2.03□□□□□ -2.08
NUP54-208ENST00000508604 E9PAM4 449 aa2.03□□□□□ -2.08
NUP54-208ENST00000508604 CREB3O43889 395 aa2.03□□□□□ -2.08
NUP54-208ENST00000508604 KRT33AO76009 404 aa2.03□□□□□ -2.08
NUP54-208ENST00000508604 IGKV3-11P04433 115 aa2.03□□□□□ -2.08
NUP54-208ENST00000508604 PCP11498 1178 aaKnown RBP2.03□□□□□ -2.08
NUP54-208ENST00000508604 JAK1P23458 1154 aa2.03□□□□□ -2.08
NUP54-208ENST00000508604 KHKP50053 298 aa2.03□□□□□ -2.08
NUP54-208ENST00000508604 ARSEP51690 589 aa2.03□□□□□ -2.08
NUP54-208ENST00000508604 FKBP3Q00688 224 aaKnown RBP2.03□□□□□ -2.08
NUP54-208ENST00000508604 TMEM132DQ14C87 1099 aa2.03□□□□□ -2.08
NUP54-208ENST00000508604 GARNL3Q5VVW2 1013 aa2.03□□□□□ -2.08
NUP54-208ENST00000508604 VASH2Q86V25 355 aa2.03□□□□□ -2.08
NUP54-208ENST00000508604 ZC3H3Q8IXZ2 948 aaKnown RBP2.03□□□□□ -2.08
NUP54-208ENST00000508604 CSNK1G2-AS1Q8NCQ2 148 aa2.03□□□□□ -2.08
NUP54-208ENST00000508604 EXD1Q8NHP7 514 aa2.03□□□□□ -2.08
NUP54-208ENST00000508604 KCNK15Q9H427 330 aa2.03□□□□□ -2.08
NUP54-208ENST00000508604 HACL1Q9UJ83 578 aa2.03□□□□□ -2.08
NUP54-208ENST00000508604 IQCMA0A1B0GVH7 501 aa2.02□□□□□ -2.09
NUP54-208ENST00000508604 FAM168BA1KXE4 195 aa2.02□□□□□ -2.09
NUP54-208ENST00000508604 PTMAP06454 111 aaKnown RBP2.02□□□□□ -2.09
NUP54-208ENST00000508604 GABRA5P31644 462 aa2.02□□□□□ -2.09
NUP54-208ENST00000508604 DNA2P51530 1060 aa2.02□□□□□ -2.09
NUP54-208ENST00000508604 TMF1P82094 1093 aa2.02□□□□□ -2.09
NUP54-208ENST00000508604 KLC1Q07866 573 aa2.02□□□□□ -2.09
NUP54-208ENST00000508604 ZNF415Q09FC8 603 aa2.02□□□□□ -2.09
NUP54-208ENST00000508604 Q1RN00 199 aa2.02□□□□□ -2.09
NUP54-208ENST00000508604 KIAA0930Q6ICG6 404 aaPredicted RBP2.02□□□□□ -2.09
NUP54-208ENST00000508604 TMUB2Q71RG4 321 aa2.02□□□□□ -2.09
NUP54-208ENST00000508604 CEP57L1Q8IYX8 460 aa2.02□□□□□ -2.09
NUP54-208ENST00000508604 C4orf32Q8N8J7 132 aa2.02□□□□□ -2.09
NUP54-208ENST00000508604 OR7A2PQ8NGA2 310 aa2.02□□□□□ -2.09
NUP54-208ENST00000508604 OR4D10Q8NGI6 311 aa2.02□□□□□ -2.09
NUP54-208ENST00000508604 C4orf45Q96LM5 186 aa2.02□□□□□ -2.09
NUP54-208ENST00000508604 NAP1L2Q9ULW6 460 aaPredicted RBP2.02□□□□□ -2.09
NUP54-208ENST00000508604 R4GN57 208 aa2.02□□□□□ -2.09
NUP54-208ENST00000508604 TDRD6O60522 2096 aaKnown RBP2.02□□□□□ -2.09
NUP54-208ENST00000508604 DCAF1Q9Y4B6 1507 aa2.02□□□□□ -2.09
NUP54-208ENST00000508604 IGKV6-21A0A0C4DH24 114 aa2.02□□□□□ -2.09
NUP54-208ENST00000508604 CCDC189A1A4V9 331 aa2.02□□□□□ -2.09
NUP54-208ENST00000508604 NPIPB9F8W1W9 429 aa2.02□□□□□ -2.09
NUP54-208ENST00000508604 PDHXO00330 501 aa2.02□□□□□ -2.09
NUP54-208ENST00000508604 SURF4O15260 269 aa2.02□□□□□ -2.09
NUP54-208ENST00000508604 HDAC3O15379 428 aa2.02□□□□□ -2.09
NUP54-208ENST00000508604 RNASEH2AO75792 299 aaKnown RBP2.02□□□□□ -2.09
NUP54-208ENST00000508604 RB1P06400 928 aa2.02□□□□□ -2.09
NUP54-208ENST00000508604 OR2T7P0C7T2 308 aa2.02□□□□□ -2.09
NUP54-208ENST00000508604 RARGP13631 454 aa2.02□□□□□ -2.09
NUP54-208ENST00000508604 ANPEPP15144 967 aa2.02□□□□□ -2.09
NUP54-208ENST00000508604 GJA1P17302 382 aa2.02□□□□□ -2.09
NUP54-208ENST00000508604 ELAVL4P26378 380 aaKnown RBP2.02□□□□□ -2.09
NUP54-208ENST00000508604 RPL34P49207 117 aaKnown RBP2.02□□□□□ -2.09
NUP54-208ENST00000508604 ATP4BP51164 291 aa2.02□□□□□ -2.09
NUP54-208ENST00000508604 ERVK-16P61578 105 aa2.02□□□□□ -2.09
NUP54-208ENST00000508604 SIRPAP78324 504 aa2.02□□□□□ -2.09
NUP54-208ENST00000508604 ITGA7Q13683 1181 aa2.02□□□□□ -2.09
NUP54-208ENST00000508604 PHKG1Q16816 387 aa2.02□□□□□ -2.09
NUP54-208ENST00000508604 MAML2Q8IZL2 1156 aaPredicted RBP2.02□□□□□ -2.09
NUP54-208ENST00000508604 CHURC1Q8WUH1 139 aa2.02□□□□□ -2.09
NUP54-208ENST00000508604 CCDC34Q96HJ3 373 aa2.02□□□□□ -2.09
NUP54-208ENST00000508604 RADILQ96JH8 1075 aa2.02□□□□□ -2.09
NUP54-208ENST00000508604 UBN1Q9NPG3 1134 aa2.02□□□□□ -2.09
NUP54-208ENST00000508604 IL17BQ9UHF5 180 aa2.02□□□□□ -2.09
NUP54-208ENST00000508604 CORO1CQ9ULV4 474 aaPredicted RBP2.02□□□□□ -2.09
NUP54-208ENST00000508604 CRYL1Q9Y2S2 319 aa2.02□□□□□ -2.09
NUP54-208ENST00000508604 RTN3O95197 1032 aaPredicted RBP2.01□□□□□ -2.09
NUP54-208ENST00000508604 CLTBP09497 229 aa2.01□□□□□ -2.09
NUP54-208ENST00000508604 MMP9P14780 707 aa2.01□□□□□ -2.09
NUP54-208ENST00000508604 ZNF32P17041 273 aa2.01□□□□□ -2.09
NUP54-208ENST00000508604 OR3A2P47893 321 aa2.01□□□□□ -2.09
NUP54-208ENST00000508604 IGLV3-21P80748 117 aaPredicted RBP2.01□□□□□ -2.09
NUP54-208ENST00000508604 FCRLAQ7L513 359 aa2.01□□□□□ -2.09
NUP54-208ENST00000508604 SERINC5Q86VE9 423 aa2.01□□□□□ -2.09
NUP54-208ENST00000508604 FAM89BQ8N5H3 189 aa2.01□□□□□ -2.09
NUP54-208ENST00000508604 SPPL2AQ8TCT8 520 aa2.01□□□□□ -2.09
NUP54-208ENST00000508604 SSMEM1Q8WWF3 244 aa2.01□□□□□ -2.09
NUP54-208ENST00000508604 THOC1Q96FV9 657 aaKnown RBP2.01□□□□□ -2.09
NUP54-208ENST00000508604 C2orf48Q96LS8 159 aa2.01□□□□□ -2.09
NUP54-208ENST00000508604 APOL2Q9BQE5 337 aa2.01□□□□□ -2.09
NUP54-208ENST00000508604 SPATC1LQ9H0A9 340 aa2.01□□□□□ -2.09
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms