RNA–Protein interactions for RNA: ENST00000503057.5

LIMCH1-205, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-205ENST00000503057 KHKP50053 298 aa10.49□□□□□ -0.73
LIMCH1-205ENST00000503057 COPZ1P61923 177 aa10.49□□□□□ -0.73
LIMCH1-205ENST00000503057 MVKQ03426 396 aa10.49□□□□□ -0.73
LIMCH1-205ENST00000503057 CEP78Q5JTW2 689 aa10.49□□□□□ -0.73
LIMCH1-205ENST00000503057 TTC9BQ8N6N2 239 aa10.49□□□□□ -0.73
LIMCH1-205ENST00000503057 CELF5Q8N6W0 485 aaKnown RBP10.49□□□□□ -0.73
LIMCH1-205ENST00000503057 TTLQ8NG68 377 aa10.49□□□□□ -0.73
LIMCH1-205ENST00000503057 ZNF420Q8TAQ5 688 aaPredicted RBP10.49□□□□□ -0.73
LIMCH1-205ENST00000503057 CYB5D2Q8WUJ1 264 aa10.49□□□□□ -0.73
LIMCH1-205ENST00000503057 SMAD5Q99717 465 aaKnown RBP10.49□□□□□ -0.73
LIMCH1-205ENST00000503057 COPS4Q9BT78 406 aa10.49□□□□□ -0.73
LIMCH1-205ENST00000503057 ZDHHC7Q9NXF8 308 aa10.49□□□□□ -0.73
LIMCH1-205ENST00000503057 INSL6Q9Y581 213 aa10.49□□□□□ -0.73
LIMCH1-205ENST00000503057 C8BP07358 591 aa10.48□□□□□ -0.73
LIMCH1-205ENST00000503057 ACRP10323 421 aa10.48□□□□□ -0.73
LIMCH1-205ENST00000503057 RPS3P23396 243 aaKnown RBP eCLIP10.48□□□□□ -0.73
LIMCH1-205ENST00000503057 FMO3P31513 532 aa10.48□□□□□ -0.73
LIMCH1-205ENST00000503057 CCR8P51685 355 aa10.48□□□□□ -0.73
LIMCH1-205ENST00000503057 CREB5Q02930 508 aa10.48□□□□□ -0.73
LIMCH1-205ENST00000503057 SEMA3BQ13214 749 aa10.48□□□□□ -0.73
LIMCH1-205ENST00000503057 PRAMEF14Q5SWL7 426 aa10.48□□□□□ -0.73
LIMCH1-205ENST00000503057 C10orf62Q5T681 223 aaPredicted RBP10.48□□□□□ -0.73
LIMCH1-205ENST00000503057 PRAMEF13Q5VWM6 474 aa10.48□□□□□ -0.73
LIMCH1-205ENST00000503057 AGTRAPQ6RW13 159 aa10.48□□□□□ -0.73
LIMCH1-205ENST00000503057 OR10G2Q8NGC3 310 aa10.48□□□□□ -0.73
LIMCH1-205ENST00000503057 STON2Q8WXE9 905 aa10.48□□□□□ -0.73
LIMCH1-205ENST00000503057 EDDM13A0A1B0GTR0 161 aa10.48□□□□□ -0.73
LIMCH1-205ENST00000503057 PRORSD1PA6NEY8 169 aa10.48□□□□□ -0.73
LIMCH1-205ENST00000503057 A6NHS1 94 aa10.48□□□□□ -0.73
LIMCH1-205ENST00000503057 OR10H2O60403 315 aa10.48□□□□□ -0.73
LIMCH1-205ENST00000503057 FGF18O76093 207 aa10.48□□□□□ -0.73
LIMCH1-205ENST00000503057 C9P02748 559 aa10.48□□□□□ -0.73
LIMCH1-205ENST00000503057 GKP32189 559 aa10.48□□□□□ -0.73
LIMCH1-205ENST00000503057 YAP1P46937 504 aaKnown RBP10.48□□□□□ -0.73
LIMCH1-205ENST00000503057 ABRAXAS2Q15018 415 aa10.48□□□□□ -0.73
LIMCH1-205ENST00000503057 CYP4V2Q6ZWL3 525 aaPredicted RBP10.48□□□□□ -0.73
LIMCH1-205ENST00000503057 RGL4Q8IZJ4 473 aa10.48□□□□□ -0.73
LIMCH1-205ENST00000503057 GEMIN6Q8WXD5 167 aaKnown RBP10.48□□□□□ -0.73
LIMCH1-205ENST00000503057 SLC35G5Q96KT7 338 aa10.48□□□□□ -0.73
LIMCH1-205ENST00000503057 GALNT8Q9NY28 637 aa10.48□□□□□ -0.73
LIMCH1-205ENST00000503057 SPATA7Q9P0W8 599 aa10.48□□□□□ -0.73
LIMCH1-205ENST00000503057 HEBP2Q9Y5Z4 205 aa10.48□□□□□ -0.73
LIMCH1-205ENST00000503057 H3BNH8 94 aa10.48□□□□□ -0.73
LIMCH1-205ENST00000503057 SERPINI2O75830 405 aa10.48□□□□□ -0.73
LIMCH1-205ENST00000503057 RB1P06400 928 aa10.48□□□□□ -0.73
LIMCH1-205ENST00000503057 CCL5P13501 91 aa10.48□□□□□ -0.73
LIMCH1-205ENST00000503057 PRR5P85299 388 aa10.48□□□□□ -0.73
LIMCH1-205ENST00000503057 PCBP2Q15366 365 aaKnown RBP eCLIP10.48□□□□□ -0.73
LIMCH1-205ENST00000503057 ZNF730Q6ZMV8 503 aa10.48□□□□□ -0.73
LIMCH1-205ENST00000503057 FATE1Q969F0 183 aa10.48□□□□□ -0.73
LIMCH1-205ENST00000503057 PPP1R14BQ96C90 147 aa10.48□□□□□ -0.73
LIMCH1-205ENST00000503057 TOR3AQ9H497 397 aa10.48□□□□□ -0.73
LIMCH1-205ENST00000503057 SDR39U1Q9NRG7 319 aaPredicted RBP10.48□□□□□ -0.73
LIMCH1-205ENST00000503057 INTS7Q9NVH2 962 aaKnown RBP10.48□□□□□ -0.73
LIMCH1-205ENST00000503057 ARMC1Q9NVT9 282 aa10.48□□□□□ -0.73
LIMCH1-205ENST00000503057 ITM2BQ9Y287 266 aa10.48□□□□□ -0.73
LIMCH1-205ENST00000503057 POFUT2Q9Y2G5 429 aa10.48□□□□□ -0.73
LIMCH1-205ENST00000503057 SCN9AQ15858 1988 aa10.48□□□□□ -0.73
LIMCH1-205ENST00000503057 HHLA1C9JL84 531 aa10.48□□□□□ -0.73
LIMCH1-205ENST00000503057 AURKAO14965 403 aa10.48□□□□□ -0.73
LIMCH1-205ENST00000503057 ABCB7O75027 752 aa10.48□□□□□ -0.73
LIMCH1-205ENST00000503057 ARHGEF15O94989 841 aa10.48□□□□□ -0.73
LIMCH1-205ENST00000503057 RPLP0P05388 317 aaKnown RBP10.48□□□□□ -0.73
LIMCH1-205ENST00000503057 FYNP06241 537 aa10.48□□□□□ -0.73
LIMCH1-205ENST00000503057 BMP2P12643 396 aa10.48□□□□□ -0.73
LIMCH1-205ENST00000503057 GM2AP17900 193 aa10.48□□□□□ -0.73
LIMCH1-205ENST00000503057 CST5P28325 142 aaPredicted RBP10.48□□□□□ -0.73
LIMCH1-205ENST00000503057 STXBP1P61764 594 aaKnown RBP10.48□□□□□ -0.73
LIMCH1-205ENST00000503057 EGFLAMQ63HQ2 1017 aa10.48□□□□□ -0.73
LIMCH1-205ENST00000503057 OR13J1Q8NGT2 312 aa10.48□□□□□ -0.73
LIMCH1-205ENST00000503057 GTPBP3Q969Y2 492 aaKnown RBP10.48□□□□□ -0.73
LIMCH1-205ENST00000503057 C11orf49Q9H6J7 331 aa10.48□□□□□ -0.73
LIMCH1-205ENST00000503057 TMEM181Q9P2C4 612 aa10.48□□□□□ -0.73
LIMCH1-205ENST00000503057 COL11A2P13942 1736 aaPredicted RBP10.48□□□□□ -0.73
LIMCH1-205ENST00000503057 PDYNP01213 254 aa10.47□□□□□ -0.73
LIMCH1-205ENST00000503057 HOXC13P31276 330 aa10.47□□□□□ -0.73
LIMCH1-205ENST00000503057 ARCN1P48444 511 aaKnown RBP10.47□□□□□ -0.73
LIMCH1-205ENST00000503057 MCCD1P59942 119 aaPredicted RBP10.47□□□□□ -0.73
LIMCH1-205ENST00000503057 TEAD2Q15562 447 aa10.47□□□□□ -0.73
LIMCH1-205ENST00000503057 NPTX1Q15818 432 aa10.47□□□□□ -0.73
LIMCH1-205ENST00000503057 HLA-DQA1Q5Y7H0 255 aa10.47□□□□□ -0.73
LIMCH1-205ENST00000503057 USP43Q70EL4 1123 aa10.47□□□□□ -0.73
LIMCH1-205ENST00000503057 ZNF598Q86UK7 904 aaKnown RBP10.47□□□□□ -0.73
LIMCH1-205ENST00000503057 NUDT13Q86X67 352 aa10.47□□□□□ -0.73
LIMCH1-205ENST00000503057 NPAS3Q8IXF0 933 aa10.47□□□□□ -0.73
LIMCH1-205ENST00000503057 BTN2A2Q8WVV5 523 aa10.47□□□□□ -0.73
LIMCH1-205ENST00000503057 SLC38A4Q969I6 547 aa10.47□□□□□ -0.73
LIMCH1-205ENST00000503057 SLITRK2Q9H156 845 aa10.47□□□□□ -0.73
LIMCH1-205ENST00000503057 SPO11Q9Y5K1 396 aa10.47□□□□□ -0.73
LIMCH1-205ENST00000503057 PRSS51A0A1B0GVH4 220 aa10.47□□□□□ -0.73
LIMCH1-205ENST00000503057 SORBS2O94875 1100 aaKnown RBP10.47□□□□□ -0.73
LIMCH1-205ENST00000503057 ZNF140P52738 457 aaPredicted RBP10.47□□□□□ -0.73
LIMCH1-205ENST00000503057 DSTNP60981 165 aa10.47□□□□□ -0.73
LIMCH1-205ENST00000503057 LARS2Q15031 903 aaKnown RBP10.47□□□□□ -0.73
LIMCH1-205ENST00000503057 GPR153Q6NV75 609 aa10.47□□□□□ -0.73
LIMCH1-205ENST00000503057 TRAM1L1Q8N609 369 aa10.47□□□□□ -0.73
LIMCH1-205ENST00000503057 OTUB2Q96DC9 234 aa10.47□□□□□ -0.73
LIMCH1-205ENST00000503057 HSH2DQ96JZ2 352 aa10.47□□□□□ -0.73
LIMCH1-205ENST00000503057 MYRFLQ96LU7 910 aa10.47□□□□□ -0.73
LIMCH1-205ENST00000503057 TPT1P8Q9HAU6 139 aa10.47□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 75.4 ms