RNA–Protein interactions for RNA: ENST00000496043.5

PTPRF-214, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 415 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-214ENST00000496043 ZNF549Q6P9A3 640 aa12.19□□□□□ -0.46
PTPRF-214ENST00000496043 SUSD1Q6UWL2 747 aa12.19□□□□□ -0.46
PTPRF-214ENST00000496043 CYHR1Q6ZMK1 362 aa12.19□□□□□ -0.46
PTPRF-214ENST00000496043 PPP1R32Q7Z5V6 425 aa12.19□□□□□ -0.46
PTPRF-214ENST00000496043 PCGF5Q86SE9 256 aa12.19□□□□□ -0.46
PTPRF-214ENST00000496043 OR4N4Q8N0Y3 316 aa12.19□□□□□ -0.46
PTPRF-214ENST00000496043 SERBP1Q8NC51 408 aaKnown RBP eCLIP12.19□□□□□ -0.46
PTPRF-214ENST00000496043 FBXO15Q8NCQ5 510 aaPredicted RBP12.19□□□□□ -0.46
PTPRF-214ENST00000496043 GALNT11Q8NCW6 608 aa12.19□□□□□ -0.46
PTPRF-214ENST00000496043 GABPB2Q8TAK5 448 aaPredicted RBP12.19□□□□□ -0.46
PTPRF-214ENST00000496043 ASB11Q8WXH4 323 aa12.19□□□□□ -0.46
PTPRF-214ENST00000496043 KCNJ9Q92806 393 aa12.19□□□□□ -0.46
PTPRF-214ENST00000496043 COL26A1Q96A83 441 aa12.19□□□□□ -0.46
PTPRF-214ENST00000496043 VPS50Q96JG6 964 aa12.19□□□□□ -0.46
PTPRF-214ENST00000496043 SLC30A3Q99726 388 aa12.19□□□□□ -0.46
PTPRF-214ENST00000496043 ZFYVE21Q9BQ24 234 aa12.19□□□□□ -0.46
PTPRF-214ENST00000496043 SLC26A1Q9H2B4 701 aa12.19□□□□□ -0.46
PTPRF-214ENST00000496043 GRPEL1Q9HAV7 217 aa12.19□□□□□ -0.46
PTPRF-214ENST00000496043 ZNF304Q9HCX3 659 aa12.19□□□□□ -0.46
PTPRF-214ENST00000496043 TRMT1Q9NXH9 659 aaKnown RBP12.19□□□□□ -0.46
PTPRF-214ENST00000496043 ANKMY1Q9P2S6 941 aa12.19□□□□□ -0.46
PTPRF-214ENST00000496043 CDC23Q9UJX2 597 aa12.19□□□□□ -0.46
PTPRF-214ENST00000496043 NXT1Q9UKK6 140 aaKnown RBP12.19□□□□□ -0.46
PTPRF-214ENST00000496043 FBXO5Q9UKT4 447 aa12.19□□□□□ -0.46
PTPRF-214ENST00000496043 SNX12Q9UMY4 172 aa12.19□□□□□ -0.46
PTPRF-214ENST00000496043 MAP4K5Q9Y4K4 846 aa12.19□□□□□ -0.46
PTPRF-214ENST00000496043 OR2A25A4D2G3 310 aa12.18□□□□□ -0.46
PTPRF-214ENST00000496043 GFYI3L273 518 aa12.18□□□□□ -0.46
PTPRF-214ENST00000496043 VPS26AO75436 327 aa12.18□□□□□ -0.46
PTPRF-214ENST00000496043 IPO13O94829 963 aaKnown RBP12.18□□□□□ -0.46
PTPRF-214ENST00000496043 CCNDBP1O95273 360 aa12.18□□□□□ -0.46
PTPRF-214ENST00000496043 SYF2O95926 243 aaKnown RBP12.18□□□□□ -0.46
PTPRF-214ENST00000496043 ERVK-10P10266 1014 aa12.18□□□□□ -0.46
PTPRF-214ENST00000496043 ITGAXP20702 1163 aa12.18□□□□□ -0.46
PTPRF-214ENST00000496043 SLC1A2P43004 574 aa12.18□□□□□ -0.46
PTPRF-214ENST00000496043 FOXL2P58012 376 aa12.18□□□□□ -0.46
PTPRF-214ENST00000496043 YBX1P67809 324 aaKnown RBP12.18□□□□□ -0.46
PTPRF-214ENST00000496043 AIMP2Q13155 320 aaKnown RBP12.18□□□□□ -0.46
PTPRF-214ENST00000496043 PTK6Q13882 451 aa12.18□□□□□ -0.46
PTPRF-214ENST00000496043 INPP5JQ15735 1006 aaPredicted RBP12.18□□□□□ -0.46
PTPRF-214ENST00000496043 HSP90AA5PQ58FG0 334 aa12.18□□□□□ -0.46
PTPRF-214ENST00000496043 EEF1AKMT2Q5JPI9 291 aaKnown RBP12.18□□□□□ -0.46
PTPRF-214ENST00000496043 RNASEH2BQ5TBB1 312 aaKnown RBP12.18□□□□□ -0.46
PTPRF-214ENST00000496043 UGT3A1Q6NUS8 523 aa12.18□□□□□ -0.46
PTPRF-214ENST00000496043 PRMT9Q6P2P2 845 aa12.18□□□□□ -0.46
PTPRF-214ENST00000496043 RNF44Q7L0R7 432 aa12.18□□□□□ -0.46
PTPRF-214ENST00000496043 RBMXL3Q8N7X1 1067 aaKnown RBP12.18□□□□□ -0.46
PTPRF-214ENST00000496043 ZDHHC19Q8WVZ1 309 aaPredicted RBP12.18□□□□□ -0.46
PTPRF-214ENST00000496043 PNPLA2Q96AD5 504 aa12.18□□□□□ -0.46
PTPRF-214ENST00000496043 PLCD4Q9BRC7 762 aa12.18□□□□□ -0.46
PTPRF-214ENST00000496043 FAM167BQ9BTA0 163 aa12.18□□□□□ -0.46
PTPRF-214ENST00000496043 SEMA3GQ9NS98 782 aa12.18□□□□□ -0.46
PTPRF-214ENST00000496043 IARS2Q9NSE4 1012 aaKnown RBP12.18□□□□□ -0.46
PTPRF-214ENST00000496043 CDC14AQ9UNH5 594 aa12.18□□□□□ -0.46
PTPRF-214ENST00000496043 MAU2Q9Y6X3 613 aa12.18□□□□□ -0.46
PTPRF-214ENST00000496043 VSTM2BA6NLU5 285 aa12.17□□□□□ -0.46
PTPRF-214ENST00000496043 E7ENX8 843 aa12.17□□□□□ -0.46
PTPRF-214ENST00000496043 H0YGG7 62 aa12.17□□□□□ -0.46
PTPRF-214ENST00000496043 SORBS2O94875 1100 aaKnown RBP12.17□□□□□ -0.46
PTPRF-214ENST00000496043 TTC4O95801 387 aa12.17□□□□□ -0.46
PTPRF-214ENST00000496043 SLC16A8O95907 504 aa12.17□□□□□ -0.46
PTPRF-214ENST00000496043 F7P08709 466 aaPredicted RBP12.17□□□□□ -0.46
PTPRF-214ENST00000496043 TCP1P17987 556 aaKnown RBP12.17□□□□□ -0.46
PTPRF-214ENST00000496043 PGAM1P18669 254 aa12.17□□□□□ -0.46
PTPRF-214ENST00000496043 SKIV2L2P42285 1042 aaKnown RBP12.17□□□□□ -0.46
PTPRF-214ENST00000496043 EMP3P54852 163 aa12.17□□□□□ -0.46
PTPRF-214ENST00000496043 ARF3P61204 181 aaPredicted RBP12.17□□□□□ -0.46
PTPRF-214ENST00000496043 ABATP80404 500 aa12.17□□□□□ -0.46
PTPRF-214ENST00000496043 TAP2Q03519 686 aa12.17□□□□□ -0.46
PTPRF-214ENST00000496043 RELAQ04206 551 aa12.17□□□□□ -0.46
PTPRF-214ENST00000496043 OCA2Q04671 838 aa12.17□□□□□ -0.46
PTPRF-214ENST00000496043 CUL1Q13616 776 aa12.17□□□□□ -0.46
PTPRF-214ENST00000496043 MUM1Q2TAK8 710 aa12.17□□□□□ -0.46
PTPRF-214ENST00000496043 ICE2Q659A1 982 aa12.17□□□□□ -0.46
PTPRF-214ENST00000496043 SLC6A19Q695T7 634 aa12.17□□□□□ -0.46
PTPRF-214ENST00000496043 IGFL3Q6UXB1 125 aa12.17□□□□□ -0.46
PTPRF-214ENST00000496043 COX15Q7KZN9 410 aa12.17□□□□□ -0.46
PTPRF-214ENST00000496043 KCNMB4Q86W47 210 aa12.17□□□□□ -0.46
PTPRF-214ENST00000496043 TMEM151BQ8IW70 566 aa12.17□□□□□ -0.46
PTPRF-214ENST00000496043 AGGF1Q8N302 714 aaeCLIP12.17□□□□□ -0.46
PTPRF-214ENST00000496043 ZADH2Q8N4Q0 377 aa12.17□□□□□ -0.46
PTPRF-214ENST00000496043 FAM26EQ8N5C1 309 aa12.17□□□□□ -0.46
PTPRF-214ENST00000496043 ZNF480Q8WV37 535 aa12.17□□□□□ -0.46
PTPRF-214ENST00000496043 TM9SF4Q92544 642 aa12.17□□□□□ -0.46
PTPRF-214ENST00000496043 SPSB2Q99619 263 aa12.17□□□□□ -0.46
PTPRF-214ENST00000496043 GPR21Q99679 349 aa12.17□□□□□ -0.46
PTPRF-214ENST00000496043 EBNA1BP2Q99848 306 aaKnown RBP12.17□□□□□ -0.46
PTPRF-214ENST00000496043 NAT9Q9BTE0 207 aa12.17□□□□□ -0.46
PTPRF-214ENST00000496043 AARSD1Q9BTE6 412 aaKnown RBP12.17□□□□□ -0.46
PTPRF-214ENST00000496043 SOX17Q9H6I2 414 aaPredicted RBP12.17□□□□□ -0.46
PTPRF-214ENST00000496043 ZNF552Q9H707 407 aaPredicted RBP12.17□□□□□ -0.46
PTPRF-214ENST00000496043 SLC6A20Q9NP91 592 aa12.17□□□□□ -0.46
PTPRF-214ENST00000496043 ASIC3Q9UHC3 531 aa12.17□□□□□ -0.46
PTPRF-214ENST00000496043 MED16Q9Y2X0 877 aa12.17□□□□□ -0.46
PTPRF-214ENST00000496043 CLEC18AA5D8T8 446 aa12.16□□□□□ -0.46
PTPRF-214ENST00000496043 MASP2O00187 686 aa12.16□□□□□ -0.46
PTPRF-214ENST00000496043 SMAPO00193 183 aa12.16□□□□□ -0.46
PTPRF-214ENST00000496043 EIF3FO00303 357 aaPredicted RBP12.16□□□□□ -0.46
PTPRF-214ENST00000496043 TXNDC9O14530 226 aa12.16□□□□□ -0.46
PTPRF-214ENST00000496043 SOCS6O14544 535 aa12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 99.1 ms