RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 CEP57L1Q8IYX8 460 aa3.12□□□□□ -1.91
VPS50-219ENST00000495039 ARHGAP24Q8N264 748 aa3.12□□□□□ -1.91
VPS50-219ENST00000495039 C17orf47Q8NEP4 570 aa3.12□□□□□ -1.91
VPS50-219ENST00000495039 OR1J1Q8NGS3 322 aa3.12□□□□□ -1.91
VPS50-219ENST00000495039 OR13J1Q8NGT2 312 aa3.12□□□□□ -1.91
VPS50-219ENST00000495039 OR4C3Q8NH37 302 aa3.12□□□□□ -1.91
VPS50-219ENST00000495039 CCDC107Q8WV48 283 aa3.12□□□□□ -1.91
VPS50-219ENST00000495039 SNRNP27Q8WVK2 155 aaKnown RBP3.12□□□□□ -1.91
VPS50-219ENST00000495039 ATL1Q8WXF7 558 aa3.12□□□□□ -1.91
VPS50-219ENST00000495039 IRGQQ8WZA9 623 aa3.12□□□□□ -1.91
VPS50-219ENST00000495039 HSD17B8Q92506 261 aa3.12□□□□□ -1.91
VPS50-219ENST00000495039 SLCO2A1Q92959 643 aa3.12□□□□□ -1.91
VPS50-219ENST00000495039 SPDL1Q96EA4 605 aa3.12□□□□□ -1.91
VPS50-219ENST00000495039 PUS3Q9BZE2 481 aaKnown RBP3.12□□□□□ -1.91
VPS50-219ENST00000495039 GPR88Q9GZN0 384 aa3.12□□□□□ -1.91
VPS50-219ENST00000495039 ARRDC1-AS1Q9H2J1 176 aa3.12□□□□□ -1.91
VPS50-219ENST00000495039 ANKZF1Q9H8Y5 726 aa3.12□□□□□ -1.91
VPS50-219ENST00000495039 THEGQ9P2T0 379 aa3.12□□□□□ -1.91
VPS50-219ENST00000495039 B3GAT1Q9P2W7 334 aa3.12□□□□□ -1.91
VPS50-219ENST00000495039 PADI2Q9Y2J8 665 aa3.12□□□□□ -1.91
VPS50-219ENST00000495039 SOS1Q07889 1333 aaPredicted RBP3.12□□□□□ -1.91
VPS50-219ENST00000495039 ZNF646O15015 1829 aaPredicted RBP3.12□□□□□ -1.91
VPS50-219ENST00000495039 EDDM13A0A1B0GTR0 161 aa3.11□□□□□ -1.91
VPS50-219ENST00000495039 TMEM221A6NGB7 291 aa3.11□□□□□ -1.91
VPS50-219ENST00000495039 OR10H2O60403 315 aa3.11□□□□□ -1.91
VPS50-219ENST00000495039 TADA2AO75478 443 aa3.11□□□□□ -1.91
VPS50-219ENST00000495039 PRKRAO75569 313 aaKnown RBP3.11□□□□□ -1.91
VPS50-219ENST00000495039 MYBL1P10243 752 aa3.11□□□□□ -1.91
VPS50-219ENST00000495039 EEF1DP29692 281 aaKnown RBP3.11□□□□□ -1.91
VPS50-219ENST00000495039 PCGF2P35227 344 aa3.11□□□□□ -1.91
VPS50-219ENST00000495039 MMP12P39900 470 aa3.11□□□□□ -1.91
VPS50-219ENST00000495039 PDX1P52945 283 aa3.11□□□□□ -1.91
VPS50-219ENST00000495039 CSE1LP55060 971 aaKnown RBP3.11□□□□□ -1.91
VPS50-219ENST00000495039 RALGDSQ12967 914 aa3.11□□□□□ -1.91
VPS50-219ENST00000495039 PTPRCAPQ14761 206 aa3.11□□□□□ -1.91
VPS50-219ENST00000495039 C15orf32Q32M92 178 aa3.11□□□□□ -1.91
VPS50-219ENST00000495039 DCAF10Q5QP82 559 aa3.11□□□□□ -1.91
VPS50-219ENST00000495039 ARMC4Q5T2S8 1044 aa3.11□□□□□ -1.91
VPS50-219ENST00000495039 KRT80Q6KB66 452 aa3.11□□□□□ -1.91
VPS50-219ENST00000495039 RAPH1Q70E73 1250 aa3.11□□□□□ -1.91
VPS50-219ENST00000495039 PIGZQ86VD9 579 aa3.11□□□□□ -1.91
VPS50-219ENST00000495039 MARCH9Q86YJ5 346 aa3.11□□□□□ -1.91
VPS50-219ENST00000495039 FGFRL1Q8N441 504 aa3.11□□□□□ -1.91
VPS50-219ENST00000495039 MARVELD2Q8N4S9 558 aa3.11□□□□□ -1.91
VPS50-219ENST00000495039 TRIML1Q8N9V2 468 aa3.11□□□□□ -1.91
VPS50-219ENST00000495039 ZNF519Q8TB69 540 aa3.11□□□□□ -1.91
VPS50-219ENST00000495039 ARSGQ96EG1 525 aa3.11□□□□□ -1.91
VPS50-219ENST00000495039 PGAP3Q96FM1 320 aaPredicted RBP3.11□□□□□ -1.91
VPS50-219ENST00000495039 GAL3ST4Q96RP7 486 aa3.11□□□□□ -1.91
VPS50-219ENST00000495039 S1PR5Q9H228 398 aa3.11□□□□□ -1.91
VPS50-219ENST00000495039 RABEP2Q9H5N1 569 aa3.11□□□□□ -1.91
VPS50-219ENST00000495039 CNOT10Q9H9A5 744 aaKnown RBP3.11□□□□□ -1.91
VPS50-219ENST00000495039 SERINC1Q9NRX5 453 aa3.11□□□□□ -1.91
VPS50-219ENST00000495039 PRMT7Q9NVM4 692 aaPredicted RBP3.11□□□□□ -1.91
VPS50-219ENST00000495039 A0A1W2PN81 502 aa3.1□□□□□ -1.91
VPS50-219ENST00000495039 FEZF1A0PJY2 475 aa3.1□□□□□ -1.91
VPS50-219ENST00000495039 MSGN1A6NI15 193 aa3.1□□□□□ -1.91
VPS50-219ENST00000495039 RNASEH1O60930 286 aaKnown RBP3.1□□□□□ -1.91
VPS50-219ENST00000495039 KRTAP5-8O75690 187 aa3.1□□□□□ -1.91
VPS50-219ENST00000495039 WDPCPO95876 746 aa3.1□□□□□ -1.91
VPS50-219ENST00000495039 EFNA1P20827 205 aaPredicted RBP3.1□□□□□ -1.91
VPS50-219ENST00000495039 CPT2P23786 658 aa3.1□□□□□ -1.91
VPS50-219ENST00000495039 MC5RP33032 325 aa3.1□□□□□ -1.91
VPS50-219ENST00000495039 CHRNA7P36544 502 aa3.1□□□□□ -1.91
VPS50-219ENST00000495039 KYNUQ16719 465 aa3.1□□□□□ -1.91
VPS50-219ENST00000495039 FAM166AQ6J272 317 aa3.1□□□□□ -1.91
VPS50-219ENST00000495039 MFSD12Q6NUT3 480 aa3.1□□□□□ -1.91
VPS50-219ENST00000495039 RPUSD3Q6P087 351 aaKnown RBP3.1□□□□□ -1.91
VPS50-219ENST00000495039 HOGA1Q86XE5 327 aa3.1□□□□□ -1.91
VPS50-219ENST00000495039 TMEM139Q8IV31 216 aa3.1□□□□□ -1.91
VPS50-219ENST00000495039 TDRD5Q8NAT2 981 aaKnown RBP3.1□□□□□ -1.91
VPS50-219ENST00000495039 CCDC191Q8NCU4 936 aa3.1□□□□□ -1.91
VPS50-219ENST00000495039 KBTBD8Q8NFY9 601 aa3.1□□□□□ -1.91
VPS50-219ENST00000495039 SSMEM1Q8WWF3 244 aa3.1□□□□□ -1.91
VPS50-219ENST00000495039 SYN2Q92777 582 aaPredicted RBP3.1□□□□□ -1.91
VPS50-219ENST00000495039 DHX58Q96C10 678 aa3.1□□□□□ -1.91
VPS50-219ENST00000495039 ERP27Q96DN0 273 aa3.1□□□□□ -1.91
VPS50-219ENST00000495039 SERINC2Q96SA4 455 aa3.1□□□□□ -1.91
VPS50-219ENST00000495039 MIS12Q9H081 205 aa3.1□□□□□ -1.91
VPS50-219ENST00000495039 A4GALTQ9NPC4 353 aa3.1□□□□□ -1.91
VPS50-219ENST00000495039 WDR35Q9P2L0 1181 aa3.1□□□□□ -1.91
VPS50-219ENST00000495039 MTUS1Q9ULD2 1270 aa3.1□□□□□ -1.91
VPS50-219ENST00000495039 ABT1Q9ULW3 272 aaKnown RBP3.1□□□□□ -1.91
VPS50-219ENST00000495039 PPP1R3CQ9UQK1 317 aa3.1□□□□□ -1.91
VPS50-219ENST00000495039 KAT6BQ8WYB5 2073 aa3.1□□□□□ -1.91
VPS50-219ENST00000495039 ANKRD61A6NGH8 418 aa3.09□□□□□ -1.91
VPS50-219ENST00000495039 UBE2CO00762 179 aa3.09□□□□□ -1.91
VPS50-219ENST00000495039 SPRY1O43609 319 aaPredicted RBP3.09□□□□□ -1.91
VPS50-219ENST00000495039 TIMM44O43615 452 aa3.09□□□□□ -1.91
VPS50-219ENST00000495039 DIAPH2O60879 1101 aa3.09□□□□□ -1.91
VPS50-219ENST00000495039 GGPS1O95749 300 aa3.09□□□□□ -1.91
VPS50-219ENST00000495039 GPIP06744 558 aa3.09□□□□□ -1.91
VPS50-219ENST00000495039 RAB40ALP0C0E4 278 aa3.09□□□□□ -1.91
VPS50-219ENST00000495039 SMIM18P0DKX4 95 aa3.09□□□□□ -1.91
VPS50-219ENST00000495039 HSPA8P11142 646 aaKnown RBP3.09□□□□□ -1.91
VPS50-219ENST00000495039 RAB28P51157 221 aa3.09□□□□□ -1.91
VPS50-219ENST00000495039 PRKCZQ05513 592 aa3.09□□□□□ -1.91
VPS50-219ENST00000495039 CALCOCO2Q13137 446 aa3.09□□□□□ -1.91
VPS50-219ENST00000495039 PHLDA2Q53GA4 152 aa3.09□□□□□ -1.91
VPS50-219ENST00000495039 KLHL26Q53HC5 615 aa3.09□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms