RNA–Protein interactions for RNA: ENST00000494776.1

LIME1-209, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 5

Gene LIME1, Length 391 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-209ENST00000494776 UAP1Q16222 522 aaPredicted RBP15.3■□□□□ 0.04
LIME1-209ENST00000494776 PHKG1Q16816 387 aa15.3■□□□□ 0.04
LIME1-209ENST00000494776 ICE2Q659A1 982 aa15.3■□□□□ 0.04
LIME1-209ENST00000494776 AGTRAPQ6RW13 159 aa15.3■□□□□ 0.04
LIME1-209ENST00000494776 TMEM207Q6UWW9 146 aa15.3■□□□□ 0.04
LIME1-209ENST00000494776 MBOAT1Q6ZNC8 495 aa15.3■□□□□ 0.04
LIME1-209ENST00000494776 ADCK2Q7Z695 626 aa15.3■□□□□ 0.04
LIME1-209ENST00000494776 CEP97Q8IW35 865 aa15.3■□□□□ 0.04
LIME1-209ENST00000494776 DSELQ8IZU8 1212 aa15.3■□□□□ 0.04
LIME1-209ENST00000494776 ZNF655Q8N720 491 aaPredicted RBP15.3■□□□□ 0.04
LIME1-209ENST00000494776 SLC38A9Q8NBW4 561 aa15.3■□□□□ 0.04
LIME1-209ENST00000494776 CT55Q8WUE5 264 aa15.3■□□□□ 0.04
LIME1-209ENST00000494776 SLC45A3Q96JT2 553 aa15.3■□□□□ 0.04
LIME1-209ENST00000494776 GPR22Q99680 433 aa15.3■□□□□ 0.04
LIME1-209ENST00000494776 SELENOSQ9BQE4 189 aa15.3■□□□□ 0.04
LIME1-209ENST00000494776 MCMBPQ9BTE3 642 aa15.3■□□□□ 0.04
LIME1-209ENST00000494776 NDC1Q9BTX1 674 aa15.3■□□□□ 0.04
LIME1-209ENST00000494776 PCBD2Q9H0N5 130 aa15.3■□□□□ 0.04
LIME1-209ENST00000494776 ATG10Q9H0Y0 220 aa15.3■□□□□ 0.04
LIME1-209ENST00000494776 TXLNGQ9NUQ3 528 aa15.3■□□□□ 0.04
LIME1-209ENST00000494776 NINJ2Q9NZG7 142 aa15.3■□□□□ 0.04
LIME1-209ENST00000494776 AHCTF1Q8WYP5 2266 aa15.29■□□□□ 0.04
LIME1-209ENST00000494776 A0A0J9YVX5 310 aa15.29■□□□□ 0.04
LIME1-209ENST00000494776 NPEPPSL1A6NEC2 478 aa15.29■□□□□ 0.04
LIME1-209ENST00000494776 C21orf140B9A014 251 aa15.29■□□□□ 0.04
LIME1-209ENST00000494776 PHGDHO43175 533 aaKnown RBP15.29■□□□□ 0.04
LIME1-209ENST00000494776 FAM155BO75949 473 aa15.29■□□□□ 0.04
LIME1-209ENST00000494776 ACSL3O95573 720 aa15.29■□□□□ 0.04
LIME1-209ENST00000494776 GUCA1CO95843 209 aa15.29■□□□□ 0.04
LIME1-209ENST00000494776 ATXN8OSP0DMR3 200 aa15.29■□□□□ 0.04
LIME1-209ENST00000494776 PRKAR1AP10644 381 aa15.29■□□□□ 0.04
LIME1-209ENST00000494776 VSX2P58304 361 aaPredicted RBP15.29■□□□□ 0.04
LIME1-209ENST00000494776 TBPL1P62380 186 aa15.29■□□□□ 0.04
LIME1-209ENST00000494776 CYP4F2P78329 520 aa15.29■□□□□ 0.04
LIME1-209ENST00000494776 ABATP80404 500 aa15.29■□□□□ 0.04
LIME1-209ENST00000494776 NAE1Q13564 534 aa15.29■□□□□ 0.04
LIME1-209ENST00000494776 DNASE1L3Q13609 305 aa15.29■□□□□ 0.04
LIME1-209ENST00000494776 SLMAPQ14BN4 828 aa15.29■□□□□ 0.04
LIME1-209ENST00000494776 EFTUD2Q15029 972 aaKnown RBP eCLIP15.29■□□□□ 0.044e-13■■■■■ 32.6
LIME1-209ENST00000494776 TAF1BQ53T94 588 aaPredicted RBP15.29■□□□□ 0.04
LIME1-209ENST00000494776 TCTE1Q5JU00 501 aa15.29■□□□□ 0.04
LIME1-209ENST00000494776 PRAMEF13Q5VWM6 474 aa15.29■□□□□ 0.04
LIME1-209ENST00000494776 C16orf46Q6P387 395 aa15.29■□□□□ 0.04
LIME1-209ENST00000494776 RAPH1Q70E73 1250 aa15.29■□□□□ 0.04
LIME1-209ENST00000494776 FRA10AC1Q70Z53 315 aa15.29■□□□□ 0.04
LIME1-209ENST00000494776 RELL1Q8IUW5 271 aa15.29■□□□□ 0.04
LIME1-209ENST00000494776 TTC29Q8NA56 475 aaPredicted RBP15.29■□□□□ 0.04
LIME1-209ENST00000494776 ATL1Q8WXF7 558 aa15.29■□□□□ 0.04
LIME1-209ENST00000494776 STARD8Q92502 1023 aa15.29■□□□□ 0.04
LIME1-209ENST00000494776 LRFN5Q96NI6 719 aa15.29■□□□□ 0.04
LIME1-209ENST00000494776 UBL7Q96S82 380 aaPredicted RBP15.29■□□□□ 0.04
LIME1-209ENST00000494776 CYTH2Q99418 400 aa15.29■□□□□ 0.04
LIME1-209ENST00000494776 PLCD4Q9BRC7 762 aa15.29■□□□□ 0.04
LIME1-209ENST00000494776 AKIRIN1Q9H9L7 192 aaPredicted RBP15.29■□□□□ 0.04
LIME1-209ENST00000494776 SLC6A20Q9NP91 592 aa15.29■□□□□ 0.04
LIME1-209ENST00000494776 PCMTD2Q9NV79 361 aa15.29■□□□□ 0.04
LIME1-209ENST00000494776 ANKMY1Q9P2S6 941 aa15.29■□□□□ 0.04
LIME1-209ENST00000494776 CTNNAL1Q9UBT7 734 aa15.29■□□□□ 0.04
LIME1-209ENST00000494776 NFU1Q9UMS0 254 aa15.29■□□□□ 0.04
LIME1-209ENST00000494776 SNX7Q9UNH6 387 aa15.29■□□□□ 0.04
LIME1-209ENST00000494776 SRPK3Q9UPE1 567 aa15.29■□□□□ 0.04
LIME1-209ENST00000494776 KLK4Q9Y5K2 254 aa15.29■□□□□ 0.04
LIME1-209ENST00000494776 MRPS18BQ9Y676 258 aaKnown RBP15.29■□□□□ 0.04
LIME1-209ENST00000494776 ATRXP46100 2492 aa15.28■□□□□ 0.04
LIME1-209ENST00000494776 CDC7O00311 574 aa15.28■□□□□ 0.04
LIME1-209ENST00000494776 NKX2-8O15522 239 aa15.28■□□□□ 0.04
LIME1-209ENST00000494776 SRPX2O60687 465 aaPredicted RBP15.28■□□□□ 0.04
LIME1-209ENST00000494776 CTSVO60911 334 aa15.28■□□□□ 0.04
LIME1-209ENST00000494776 C1QAP02745 245 aa15.28■□□□□ 0.04
LIME1-209ENST00000494776 EIF2S1P05198 315 aaKnown RBP15.28■□□□□ 0.04
LIME1-209ENST00000494776 CTSBP07858 339 aa15.28■□□□□ 0.04
LIME1-209ENST00000494776 ALAS2P22557 587 aa15.28■□□□□ 0.04
LIME1-209ENST00000494776 F8A1P23610 371 aa15.28■□□□□ 0.04
LIME1-209ENST00000494776 CCND1P24385 295 aa15.28■□□□□ 0.04
LIME1-209ENST00000494776 RAB10P61026 200 aa15.28■□□□□ 0.04
LIME1-209ENST00000494776 YBX1P67809 324 aaKnown RBP15.28■□□□□ 0.04
LIME1-209ENST00000494776 GRM7Q14831 915 aa15.28■□□□□ 0.04
LIME1-209ENST00000494776 PTCHD3Q3KNS1 767 aa15.28■□□□□ 0.04
LIME1-209ENST00000494776 C1orf189Q5VU69 101 aa15.28■□□□□ 0.04
LIME1-209ENST00000494776 CAPN13Q6MZZ7 669 aaPredicted RBP15.28■□□□□ 0.04
LIME1-209ENST00000494776 LRRC56Q8IYG6 542 aaPredicted RBP15.28■□□□□ 0.04
LIME1-209ENST00000494776 ANKRD49Q8WVL7 239 aa15.28■□□□□ 0.04
LIME1-209ENST00000494776 ANKRD7Q92527 254 aa15.28■□□□□ 0.04
LIME1-209ENST00000494776 EGFL8Q99944 293 aa15.28■□□□□ 0.04
LIME1-209ENST00000494776 ZFYVE21Q9BQ24 234 aa15.28■□□□□ 0.04
LIME1-209ENST00000494776 DPH2Q9BQC3 489 aaPredicted RBP15.28■□□□□ 0.04
LIME1-209ENST00000494776 GPR87Q9BY21 358 aa15.28■□□□□ 0.04
LIME1-209ENST00000494776 CHST8Q9H2A9 424 aa15.28■□□□□ 0.04
LIME1-209ENST00000494776 CDC42EP4Q9H3Q1 356 aaKnown RBP15.28■□□□□ 0.04
LIME1-209ENST00000494776 STARD5Q9NSY2 213 aa15.28■□□□□ 0.04
LIME1-209ENST00000494776 NDOR1Q9UHB4 597 aa15.28■□□□□ 0.04
LIME1-209ENST00000494776 NOVA2Q9UNW9 492 aaKnown RBP15.28■□□□□ 0.04
LIME1-209ENST00000494776 OR2A25A4D2G3 310 aa15.27■□□□□ 0.04
LIME1-209ENST00000494776 C9J4A7 227 aa15.27■□□□□ 0.04
LIME1-209ENST00000494776 CCDC166P0CW27 439 aa15.27■□□□□ 0.04
LIME1-209ENST00000494776 ECHS1P30084 290 aa15.27■□□□□ 0.04
LIME1-209ENST00000494776 RORAP35398 523 aa15.27■□□□□ 0.04
LIME1-209ENST00000494776 ARSFP54793 590 aa15.27■□□□□ 0.04
LIME1-209ENST00000494776 COL9A2Q14055 689 aaPredicted RBP15.27■□□□□ 0.04
LIME1-209ENST00000494776 WASHC2DQ5SRD0 308 aa15.27■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms