RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 RFPL2O75678 378 aa16.07■□□□□ 0.16
CCDC88B-210ENST00000494566 PORP16435 677 aaPredicted RBP16.07■□□□□ 0.16
CCDC88B-210ENST00000494566 HALP42357 657 aa16.07■□□□□ 0.16
CCDC88B-210ENST00000494566 NSG1P42857 185 aa16.07■□□□□ 0.16
CCDC88B-210ENST00000494566 MASP1P48740 699 aa16.07■□□□□ 0.16
CCDC88B-210ENST00000494566 SLC13A2Q13183 592 aa16.07■□□□□ 0.16
CCDC88B-210ENST00000494566 SLC14A1Q13336 389 aa16.07■□□□□ 0.16
CCDC88B-210ENST00000494566 DDX53Q86TM3 631 aaKnown RBP16.07■□□□□ 0.16
CCDC88B-210ENST00000494566 CYB5D2Q8WUJ1 264 aa16.07■□□□□ 0.16
CCDC88B-210ENST00000494566 NODALQ96S42 347 aa16.07■□□□□ 0.16
CCDC88B-210ENST00000494566 BRD9Q9H8M2 597 aa16.07■□□□□ 0.16
CCDC88B-210ENST00000494566 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP16.07■□□□□ 0.168e-8■■■□□ 16.5
CCDC88B-210ENST00000494566 SLC22A14Q9Y267 594 aa16.07■□□□□ 0.16
CCDC88B-210ENST00000494566 HCFC2Q9Y5Z7 792 aa16.07■□□□□ 0.16
CCDC88B-210ENST00000494566 TMEM202A6NGA9 273 aa16.06■□□□□ 0.16
CCDC88B-210ENST00000494566 PRAMEF4O60810 478 aa16.06■□□□□ 0.16
CCDC88B-210ENST00000494566 CBFA2T3O75081 653 aa16.06■□□□□ 0.16
CCDC88B-210ENST00000494566 SEC14L2O76054 403 aa16.06■□□□□ 0.16
CCDC88B-210ENST00000494566 ABCB1P08183 1280 aaPredicted RBP16.06■□□□□ 0.16
CCDC88B-210ENST00000494566 ANXA5P08758 320 aa16.06■□□□□ 0.16
CCDC88B-210ENST00000494566 GGT1P19440 569 aa16.06■□□□□ 0.16
CCDC88B-210ENST00000494566 CDKN2CP42773 168 aa16.06■□□□□ 0.16
CCDC88B-210ENST00000494566 PTCHD3Q3KNS1 767 aa16.06■□□□□ 0.16
CCDC88B-210ENST00000494566 IRAK1BP1Q5VVH5 260 aa16.06■□□□□ 0.16
CCDC88B-210ENST00000494566 PRAMEF9Q5VWM5 478 aa16.06■□□□□ 0.16
CCDC88B-210ENST00000494566 CES5AQ6NT32 575 aa16.06■□□□□ 0.16
CCDC88B-210ENST00000494566 NEK5Q6P3R8 708 aa16.06■□□□□ 0.16
CCDC88B-210ENST00000494566 VTCN1Q7Z7D3 282 aa16.06■□□□□ 0.16
CCDC88B-210ENST00000494566 PROSER1Q86XN7 944 aa16.06■□□□□ 0.16
CCDC88B-210ENST00000494566 ALDH16A1Q8IZ83 802 aa16.06■□□□□ 0.16
CCDC88B-210ENST00000494566 ZNF420Q8TAQ5 688 aaPredicted RBP16.06■□□□□ 0.16
CCDC88B-210ENST00000494566 DPH2Q9BQC3 489 aaPredicted RBP16.06■□□□□ 0.16
CCDC88B-210ENST00000494566 ZDHHC3Q9NYG2 299 aa16.06■□□□□ 0.16
CCDC88B-210ENST00000494566 MAGEL2Q9UJ55 1249 aa16.06■□□□□ 0.16
CCDC88B-210ENST00000494566 BLOC1S6Q9UL45 172 aa16.06■□□□□ 0.16
CCDC88B-210ENST00000494566 TRAV19A0A0A6YYK7 116 aa16.06■□□□□ 0.16
CCDC88B-210ENST00000494566 M0R3G1 203 aa16.06■□□□□ 0.16
CCDC88B-210ENST00000494566 ARNTLO00327 626 aa16.06■□□□□ 0.16
CCDC88B-210ENST00000494566 CLDN9O95484 217 aa16.06■□□□□ 0.16
CCDC88B-210ENST00000494566 HPCAL1P37235 193 aa16.06■□□□□ 0.16
CCDC88B-210ENST00000494566 TTLL9Q3SXZ7 439 aa16.06■□□□□ 0.16
CCDC88B-210ENST00000494566 CACHD1Q5VU97 1274 aa16.06■□□□□ 0.16
CCDC88B-210ENST00000494566 SLC16A12Q6ZSM3 486 aa16.06■□□□□ 0.16
CCDC88B-210ENST00000494566 USP45Q70EL2 814 aa16.06■□□□□ 0.16
CCDC88B-210ENST00000494566 ANKRD33Q7Z3H0 272 aa16.06■□□□□ 0.16
CCDC88B-210ENST00000494566 LILRA3Q8N6C8 439 aaPredicted RBP16.06■□□□□ 0.16
CCDC88B-210ENST00000494566 ADAMTS16Q8TE57 1224 aa16.06■□□□□ 0.16
CCDC88B-210ENST00000494566 P2RY13Q9BPV8 354 aa16.06■□□□□ 0.16
CCDC88B-210ENST00000494566 KCTD5Q9NXV2 234 aa16.06■□□□□ 0.16
CCDC88B-210ENST00000494566 PCDHB14Q9Y5E9 798 aa16.06■□□□□ 0.16
CCDC88B-210ENST00000494566 DENND4CQ5VZ89 1909 aa16.06■□□□□ 0.16
CCDC88B-210ENST00000494566 M0R129 80 aa16.05■□□□□ 0.16
CCDC88B-210ENST00000494566 SLC1A7O00341 560 aa16.05■□□□□ 0.16
CCDC88B-210ENST00000494566 FGF18O76093 207 aa16.05■□□□□ 0.16
CCDC88B-210ENST00000494566 MNX1P50219 401 aaPredicted RBP16.05■□□□□ 0.16
CCDC88B-210ENST00000494566 DDX39BQ13838 428 aaKnown RBP16.05■□□□□ 0.16
CCDC88B-210ENST00000494566 CEP68Q76N32 757 aa16.05■□□□□ 0.16
CCDC88B-210ENST00000494566 LMNTD1Q8N9Z9 388 aa16.05■□□□□ 0.16
CCDC88B-210ENST00000494566 PAPD5Q8NDF8 572 aaKnown RBP16.05■□□□□ 0.16
CCDC88B-210ENST00000494566 APIPQ96GX9 242 aa16.05■□□□□ 0.16
CCDC88B-210ENST00000494566 PARVBQ9HBI1 364 aa16.05■□□□□ 0.16
CCDC88B-210ENST00000494566 ERGIC3Q9Y282 383 aa16.05■□□□□ 0.16
CCDC88B-210ENST00000494566 EBLN1P0CF75 366 aa16.05■□□□□ 0.16
CCDC88B-210ENST00000494566 EMX1Q04741 257 aaPredicted RBP16.05■□□□□ 0.16
CCDC88B-210ENST00000494566 MADCAM1Q13477 382 aa16.05■□□□□ 0.16
CCDC88B-210ENST00000494566 PON2Q15165 354 aa16.05■□□□□ 0.16
CCDC88B-210ENST00000494566 ADPRMQ3LIE5 342 aa16.05■□□□□ 0.16
CCDC88B-210ENST00000494566 GPR33Q49SQ1 333 aa16.05■□□□□ 0.16
CCDC88B-210ENST00000494566 CYP27C1Q4G0S4 372 aa16.05■□□□□ 0.16
CCDC88B-210ENST00000494566 USP39Q53GS9 565 aaKnown RBP16.05■□□□□ 0.16
CCDC88B-210ENST00000494566 SOWAHCQ53LP3 525 aaPredicted RBP16.05■□□□□ 0.16
CCDC88B-210ENST00000494566 SLC7A5P1Q8MH63 180 aa16.05■□□□□ 0.16
CCDC88B-210ENST00000494566 Q8N9G6 341 aaPredicted RBP16.05■□□□□ 0.16
CCDC88B-210ENST00000494566 ZNF548Q8NEK5 533 aaPredicted RBP16.05■□□□□ 0.16
CCDC88B-210ENST00000494566 PSMA8Q8TAA3 256 aa16.05■□□□□ 0.16
CCDC88B-210ENST00000494566 SH3YL1Q96HL8 342 aaPredicted RBP16.05■□□□□ 0.16
CCDC88B-210ENST00000494566 DOK1Q99704 481 aa16.05■□□□□ 0.16
CCDC88B-210ENST00000494566 HEPHQ9BQS7 1158 aa16.05■□□□□ 0.16
CCDC88B-210ENST00000494566 KLHL25Q9H0H3 589 aa16.05■□□□□ 0.16
CCDC88B-210ENST00000494566 RC3H2Q9HBD1 1191 aaKnown RBP16.05■□□□□ 0.16
CCDC88B-210ENST00000494566 ABCB10Q9NRK6 738 aa16.05■□□□□ 0.16
CCDC88B-210ENST00000494566 WDR70Q9NW82 654 aa16.05■□□□□ 0.16
CCDC88B-210ENST00000494566 C1orf109Q9NX04 203 aa16.05■□□□□ 0.16
CCDC88B-210ENST00000494566 GPRC5BQ9NZH0 403 aa16.05■□□□□ 0.16
CCDC88B-210ENST00000494566 ABCG2Q9UNQ0 655 aa16.05■□□□□ 0.16
CCDC88B-210ENST00000494566 ELOVL7A1L3X0 281 aa16.05■□□□□ 0.16
CCDC88B-210ENST00000494566 SLC28A1O00337 649 aa16.05■□□□□ 0.16
CCDC88B-210ENST00000494566 IFRD1O00458 451 aaPredicted RBP16.05■□□□□ 0.16
CCDC88B-210ENST00000494566 KDM1AO60341 852 aa16.05■□□□□ 0.16
CCDC88B-210ENST00000494566 TMED10P49755 219 aaKnown RBP16.05■□□□□ 0.16
CCDC88B-210ENST00000494566 CYP4F2P78329 520 aa16.05■□□□□ 0.16
CCDC88B-210ENST00000494566 INAQ16352 499 aa16.05■□□□□ 0.16
CCDC88B-210ENST00000494566 GTF2IRD2BQ6EKJ0 949 aa16.05■□□□□ 0.16
CCDC88B-210ENST00000494566 NCCRP1Q6ZVX7 275 aaPredicted RBP16.05■□□□□ 0.16
CCDC88B-210ENST00000494566 GTF2IRD2Q86UP8 949 aa16.05■□□□□ 0.16
CCDC88B-210ENST00000494566 LSRQ86X29 649 aaPredicted RBP16.05■□□□□ 0.16
CCDC88B-210ENST00000494566 APOLD1Q96LR9 279 aa16.05■□□□□ 0.16
CCDC88B-210ENST00000494566 NTMT1Q9BV86 223 aa16.05■□□□□ 0.16
CCDC88B-210ENST00000494566 ELOVL6Q9H5J4 265 aa16.05■□□□□ 0.16
CCDC88B-210ENST00000494566 MARCH7Q9H992 704 aa16.05■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms