RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 SRPK3Q9UPE1 567 aa7.76□□□□□ -1.17
USP40-216ENST00000485943 WASF3Q9UPY6 502 aa7.76□□□□□ -1.17
USP40-216ENST00000485943 PADI2Q9Y2J8 665 aa7.76□□□□□ -1.17
USP40-216ENST00000485943 ANGPTL3Q9Y5C1 460 aa7.76□□□□□ -1.17
USP40-216ENST00000485943 ACACAQ13085 2346 aa7.76□□□□□ -1.17
USP40-216ENST00000485943 NCOR2Q9Y618 2525 aa7.75□□□□□ -1.17
USP40-216ENST00000485943 CASC3O15234 703 aaKnown RBP7.75□□□□□ -1.17
USP40-216ENST00000485943 FANCGO15287 622 aa7.75□□□□□ -1.17
USP40-216ENST00000485943 SLC16A5O15375 505 aa7.75□□□□□ -1.17
USP40-216ENST00000485943 H2AFYO75367 372 aaKnown RBP7.75□□□□□ -1.17
USP40-216ENST00000485943 KRT37O76014 449 aa7.75□□□□□ -1.17
USP40-216ENST00000485943 NTRK1P04629 796 aa7.75□□□□□ -1.17
USP40-216ENST00000485943 SERPIND1P05546 499 aa7.75□□□□□ -1.17
USP40-216ENST00000485943 CD63P08962 238 aa7.75□□□□□ -1.17
USP40-216ENST00000485943 PVRP15151 417 aa7.75□□□□□ -1.17
USP40-216ENST00000485943 PCSK2P16519 638 aa7.75□□□□□ -1.17
USP40-216ENST00000485943 MAGP20916 626 aa7.75□□□□□ -1.17
USP40-216ENST00000485943 ALAS2P22557 587 aa7.75□□□□□ -1.17
USP40-216ENST00000485943 TYK2P29597 1187 aa7.75□□□□□ -1.17
USP40-216ENST00000485943 ETV5P41161 510 aa7.75□□□□□ -1.17
USP40-216ENST00000485943 SERPINB9P50453 376 aa7.75□□□□□ -1.17
USP40-216ENST00000485943 CLCN7P51798 805 aa7.75□□□□□ -1.17
USP40-216ENST00000485943 AP1S2P56377 157 aa7.75□□□□□ -1.17
USP40-216ENST00000485943 PPP1CAP62136 330 aa7.75□□□□□ -1.17
USP40-216ENST00000485943 IFFO1Q0D2I5 559 aa7.75□□□□□ -1.17
USP40-216ENST00000485943 FRG1Q14331 258 aaKnown RBP7.75□□□□□ -1.17
USP40-216ENST00000485943 GPR19Q15760 415 aa7.75□□□□□ -1.17
USP40-216ENST00000485943 NDUFA9Q16795 377 aa7.75□□□□□ -1.17
USP40-216ENST00000485943 SLC5A12Q1EHB4 618 aa7.75□□□□□ -1.17
USP40-216ENST00000485943 DEFB110Q30KQ9 67 aa7.75□□□□□ -1.17
USP40-216ENST00000485943 KBTBD12Q3ZCT8 623 aa7.75□□□□□ -1.17
USP40-216ENST00000485943 TCTE1Q5JU00 501 aa7.75□□□□□ -1.17
USP40-216ENST00000485943 RBM20Q5T481 1227 aaKnown RBP7.75□□□□□ -1.17
USP40-216ENST00000485943 SAMD5Q5TGI4 173 aa7.75□□□□□ -1.17
USP40-216ENST00000485943 PRAMEF13Q5VWM6 474 aa7.75□□□□□ -1.17
USP40-216ENST00000485943 TLDC1Q6P9B6 456 aa7.75□□□□□ -1.17
USP40-216ENST00000485943 SUSD1Q6UWL2 747 aa7.75□□□□□ -1.17
USP40-216ENST00000485943 CLEC14AQ86T13 490 aa7.75□□□□□ -1.17
USP40-216ENST00000485943 ADAMTSL2Q86TH1 951 aa7.75□□□□□ -1.17
USP40-216ENST00000485943 TRIM73Q86UV7 250 aa7.75□□□□□ -1.17
USP40-216ENST00000485943 C17orf64Q86WR6 236 aa7.75□□□□□ -1.17
USP40-216ENST00000485943 IGDCC3Q8IVU1 814 aa7.75□□□□□ -1.17
USP40-216ENST00000485943 SPACA3Q8IXA5 215 aa7.75□□□□□ -1.17
USP40-216ENST00000485943 ADGRF3Q8IZF5 1079 aa7.75□□□□□ -1.17
USP40-216ENST00000485943 CNPY4Q8N129 248 aa7.75□□□□□ -1.17
USP40-216ENST00000485943 NOA1Q8NC60 698 aaKnown RBP7.75□□□□□ -1.17
USP40-216ENST00000485943 UHMK1Q8TAS1 419 aaKnown RBP7.75□□□□□ -1.17
USP40-216ENST00000485943 EEF1AKMT1Q8WVE0 214 aa7.75□□□□□ -1.17
USP40-216ENST00000485943 KLHL6Q8WZ60 621 aa7.75□□□□□ -1.17
USP40-216ENST00000485943 SEC14L1Q92503 715 aa7.75□□□□□ -1.17
USP40-216ENST00000485943 VPS50Q96JG6 964 aa7.75□□□□□ -1.17
USP40-216ENST00000485943 RBBP8Q99708 897 aa7.75□□□□□ -1.17
USP40-216ENST00000485943 SELENOSQ9BQE4 189 aa7.75□□□□□ -1.17
USP40-216ENST00000485943 HAUS8Q9BT25 410 aa7.75□□□□□ -1.17
USP40-216ENST00000485943 B3GNT4Q9C0J1 378 aa7.75□□□□□ -1.17
USP40-216ENST00000485943 ACTR5Q9H9F9 607 aaPredicted RBP7.75□□□□□ -1.17
USP40-216ENST00000485943 PARVBQ9HBI1 364 aa7.75□□□□□ -1.17
USP40-216ENST00000485943 ASCL3Q9NQ33 180 aa7.75□□□□□ -1.17
USP40-216ENST00000485943 GRHL1Q9NZI5 618 aa7.75□□□□□ -1.17
USP40-216ENST00000485943 CD274Q9NZQ7 290 aa7.75□□□□□ -1.17
USP40-216ENST00000485943 OGFRQ9NZT2 677 aa7.75□□□□□ -1.17
USP40-216ENST00000485943 FOXJ2Q9P0K8 574 aa7.75□□□□□ -1.17
USP40-216ENST00000485943 SLC17A6Q9P2U8 582 aa7.75□□□□□ -1.17
USP40-216ENST00000485943 KCND3Q9UK17 655 aa7.75□□□□□ -1.17
USP40-216ENST00000485943 PADI1Q9ULC6 663 aa7.75□□□□□ -1.17
USP40-216ENST00000485943 RNF112Q9ULX5 631 aa7.75□□□□□ -1.17
USP40-216ENST00000485943 PLCL2Q9UPR0 1127 aa7.75□□□□□ -1.17
USP40-216ENST00000485943 AP1M2Q9Y6Q5 423 aa7.75□□□□□ -1.17
USP40-216ENST00000485943 CACNA1AO00555 2505 aa7.75□□□□□ -1.17
USP40-216ENST00000485943 A0A0J9YVX5 310 aa7.74□□□□□ -1.17
USP40-216ENST00000485943 NCF1BA6NI72 391 aaPredicted RBP7.74□□□□□ -1.17
USP40-216ENST00000485943 PRR19A6NJB7 356 aa7.74□□□□□ -1.17
USP40-216ENST00000485943 SYCE1LA8MT33 242 aa7.74□□□□□ -1.17
USP40-216ENST00000485943 ZNF891A8MT65 544 aaPredicted RBP7.74□□□□□ -1.17
USP40-216ENST00000485943 NCF1CA8MVU1 366 aaPredicted RBP7.74□□□□□ -1.17
USP40-216ENST00000485943 ARHGEF33A8MVX0 844 aa7.74□□□□□ -1.17
USP40-216ENST00000485943 CDRT15L2A8MXV6 281 aa7.74□□□□□ -1.17
USP40-216ENST00000485943 SUPT3HB4E1H0 165 aa7.74□□□□□ -1.17
USP40-216ENST00000485943 C9orf172C9J069 976 aa7.74□□□□□ -1.17
USP40-216ENST00000485943 TXNDC9O14530 226 aa7.74□□□□□ -1.17
USP40-216ENST00000485943 PRPF4O43172 522 aaKnown RBP eCLIP7.74□□□□□ -1.17
USP40-216ENST00000485943 TLX3O43711 291 aaPredicted RBP7.74□□□□□ -1.17
USP40-216ENST00000485943 MAN1A2O60476 641 aa7.74□□□□□ -1.17
USP40-216ENST00000485943 PSIP1O75475 530 aaKnown RBP7.74□□□□□ -1.17
USP40-216ENST00000485943 SUPT3HO75486 399 aa7.74□□□□□ -1.17
USP40-216ENST00000485943 SLU7O95391 586 aaKnown RBP7.74□□□□□ -1.17
USP40-216ENST00000485943 MATN4O95460 622 aa7.74□□□□□ -1.17
USP40-216ENST00000485943 RECKO95980 971 aa7.74□□□□□ -1.17
USP40-216ENST00000485943 RPLP1P05386 114 aaKnown RBP7.74□□□□□ -1.17
USP40-216ENST00000485943 ENO2P09104 434 aaPredicted RBP7.74□□□□□ -1.17
USP40-216ENST00000485943 NCF1P14598 390 aaPredicted RBP7.74□□□□□ -1.17
USP40-216ENST00000485943 FOLR1P15328 257 aa7.74□□□□□ -1.17
USP40-216ENST00000485943 ST6GAL1P15907 406 aa7.74□□□□□ -1.17
USP40-216ENST00000485943 TCN2P20062 427 aa7.74□□□□□ -1.17
USP40-216ENST00000485943 ITGAXP20702 1163 aa7.74□□□□□ -1.17
USP40-216ENST00000485943 HRH2P25021 359 aa7.74□□□□□ -1.17
USP40-216ENST00000485943 CRABP2P29373 138 aa7.74□□□□□ -1.17
USP40-216ENST00000485943 DLSTP36957 453 aa7.74□□□□□ -1.17
USP40-216ENST00000485943 SERPINB8P50452 374 aa7.74□□□□□ -1.17
USP40-216ENST00000485943 PMS2P54278 862 aa7.74□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms