RNA–Protein interactions for RNA: ENST00000477935.1

VPS50-214, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2

Gene VPS50, Length 760 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-214ENST00000477935 KLHL29Q96CT2 875 aa4.51□□□□□ -1.69
VPS50-214ENST00000477935 BICD1Q96G01 975 aa4.51□□□□□ -1.69
VPS50-214ENST00000477935 GCNAQ96QF7 691 aa4.51□□□□□ -1.69
VPS50-214ENST00000477935 CSF3RQ99062 836 aa4.51□□□□□ -1.69
VPS50-214ENST00000477935 RIT2Q99578 217 aa4.51□□□□□ -1.69
VPS50-214ENST00000477935 NFKBIZQ9BYH8 718 aa4.51□□□□□ -1.69
VPS50-214ENST00000477935 NXF3Q9H4D5 531 aaKnown RBP4.51□□□□□ -1.69
VPS50-214ENST00000477935 RETREG1Q9H6L5 497 aa4.51□□□□□ -1.69
VPS50-214ENST00000477935 ESRP2Q9H6T0 727 aaKnown RBP4.51□□□□□ -1.69
VPS50-214ENST00000477935 DCTPP1Q9H773 170 aa4.51□□□□□ -1.69
VPS50-214ENST00000477935 MKKSQ9NPJ1 570 aaPredicted RBP4.51□□□□□ -1.69
VPS50-214ENST00000477935 FBXL5Q9UKA1 691 aa4.51□□□□□ -1.69
VPS50-214ENST00000477935 RCOR1Q9UKL0 485 aa4.51□□□□□ -1.69
VPS50-214ENST00000477935 SARDHQ9UL12 918 aa4.51□□□□□ -1.69
VPS50-214ENST00000477935 A4GNTQ9UNA3 340 aa4.51□□□□□ -1.69
VPS50-214ENST00000477935 CRYL1Q9Y2S2 319 aa4.51□□□□□ -1.69
VPS50-214ENST00000477935 LSM4Q9Y4Z0 139 aaKnown RBP4.51□□□□□ -1.69
VPS50-214ENST00000477935 CYP46A1Q9Y6A2 500 aa4.51□□□□□ -1.69
VPS50-214ENST00000477935 STON1Q9Y6Q2 735 aa4.51□□□□□ -1.69
VPS50-214ENST00000477935 TSC2P49815 1807 aa4.51□□□□□ -1.69
VPS50-214ENST00000477935 EML5Q05BV3 1969 aa4.51□□□□□ -1.69
VPS50-214ENST00000477935 NBASA2RRP1 2371 aa4.5□□□□□ -1.69
VPS50-214ENST00000477935 CABIN1Q9Y6J0 2220 aa4.5□□□□□ -1.69
VPS50-214ENST00000477935 BAZ2BQ9UIF8 2168 aaKnown RBP4.5□□□□□ -1.69
VPS50-214ENST00000477935 LRBAP50851 2863 aa4.5□□□□□ -1.69
VPS50-214ENST00000477935 SAA2-SAA4A0A096LPE2 208 aa4.5□□□□□ -1.69
VPS50-214ENST00000477935 A0A1W2PQM1 296 aa4.5□□□□□ -1.69
VPS50-214ENST00000477935 MAGEA13PA6NCF6 341 aa4.5□□□□□ -1.69
VPS50-214ENST00000477935 SOCS6O14544 535 aa4.5□□□□□ -1.69
VPS50-214ENST00000477935 IFIT3O14879 490 aaKnown RBP4.5□□□□□ -1.69
VPS50-214ENST00000477935 DFNA5O60443 496 aa4.5□□□□□ -1.69
VPS50-214ENST00000477935 CLDN14O95500 239 aa4.5□□□□□ -1.69
VPS50-214ENST00000477935 PRAMEF12O95522 483 aa4.5□□□□□ -1.69
VPS50-214ENST00000477935 PMS2P2O95744 297 aa4.5□□□□□ -1.69
VPS50-214ENST00000477935 F9P00740 461 aa4.5□□□□□ -1.69
VPS50-214ENST00000477935 GABRR2P28476 465 aa4.5□□□□□ -1.69
VPS50-214ENST00000477935 TUFMP49411 452 aaKnown RBP4.5□□□□□ -1.69
VPS50-214ENST00000477935 PTP4A2Q12974 167 aa4.5□□□□□ -1.69
VPS50-214ENST00000477935 OASLQ15646 514 aaKnown RBP4.5□□□□□ -1.69
VPS50-214ENST00000477935 NAB2Q15742 525 aa4.5□□□□□ -1.69
VPS50-214ENST00000477935 ATP13A5Q4VNC0 1218 aa4.5□□□□□ -1.69
VPS50-214ENST00000477935 STXBP5Q5T5C0 1151 aa4.5□□□□□ -1.69
VPS50-214ENST00000477935 ZNF280DQ6N043 979 aa4.5□□□□□ -1.69
VPS50-214ENST00000477935 LINGO2Q7L985 606 aa4.5□□□□□ -1.69
VPS50-214ENST00000477935 TRMT11Q7Z4G4 463 aaKnown RBP4.5□□□□□ -1.69
VPS50-214ENST00000477935 TMTC2Q8N394 836 aa4.5□□□□□ -1.69
VPS50-214ENST00000477935 ZBTB2Q8N680 514 aa4.5□□□□□ -1.69
VPS50-214ENST00000477935 CADM4Q8NFZ8 388 aa4.5□□□□□ -1.69
VPS50-214ENST00000477935 HUS1BQ8NHY5 278 aa4.5□□□□□ -1.69
VPS50-214ENST00000477935 SPATA20Q8TB22 786 aa4.5□□□□□ -1.69
VPS50-214ENST00000477935 KCNE4Q8WWG9 221 aa4.5□□□□□ -1.69
VPS50-214ENST00000477935 C3orf30Q96M34 536 aa4.5□□□□□ -1.69
VPS50-214ENST00000477935 IL17FQ96PD4 163 aa4.5□□□□□ -1.69
VPS50-214ENST00000477935 ZNF385AQ96PM9 386 aaKnown RBP4.5□□□□□ -1.69
VPS50-214ENST00000477935 HAUS8Q9BT25 410 aa4.5□□□□□ -1.69
VPS50-214ENST00000477935 TKTL2Q9H0I9 626 aa4.5□□□□□ -1.69
VPS50-214ENST00000477935 SLC25A18Q9H1K4 315 aa4.5□□□□□ -1.69
VPS50-214ENST00000477935 FZD8Q9H461 694 aa4.5□□□□□ -1.69
VPS50-214ENST00000477935 C17orf75Q9HAS0 396 aa4.5□□□□□ -1.69
VPS50-214ENST00000477935 DUS2Q9NX74 493 aaKnown RBP4.5□□□□□ -1.69
VPS50-214ENST00000477935 SMARCAL1Q9NZC9 954 aa4.5□□□□□ -1.69
VPS50-214ENST00000477935 YIPF1Q9Y548 306 aa4.5□□□□□ -1.69
VPS50-214ENST00000477935 SCINQ9Y6U3 715 aa4.5□□□□□ -1.69
VPS50-214ENST00000477935 VWA8A3KMH1 1905 aa4.5□□□□□ -1.69
VPS50-214ENST00000477935 NID2Q14112 1375 aa4.5□□□□□ -1.69
VPS50-214ENST00000477935 CSMD1Q96PZ7 3565 aa4.5□□□□□ -1.69
VPS50-214ENST00000477935 KNL1Q8NG31 2342 aa4.5□□□□□ -1.69
VPS50-214ENST00000477935 BOD1L1Q8NFC6 3051 aa4.49□□□□□ -1.69
VPS50-214ENST00000477935 BSNQ9UPA5 3926 aa4.49□□□□□ -1.69
VPS50-214ENST00000477935 COL5A1P20908 1838 aaPredicted RBP4.49□□□□□ -1.69
VPS50-214ENST00000477935 IGHV1OR15-9A0A0B4J2B8 117 aa4.49□□□□□ -1.69
VPS50-214ENST00000477935 A0A0D9SFI3 127 aa4.49□□□□□ -1.69
VPS50-214ENST00000477935 TCRBV21S2A2A0A5A6 115 aa4.49□□□□□ -1.69
VPS50-214ENST00000477935 TMEM202A6NGA9 273 aa4.49□□□□□ -1.69
VPS50-214ENST00000477935 SGK1O00141 431 aa4.49□□□□□ -1.69
VPS50-214ENST00000477935 PTGESO14684 152 aa4.49□□□□□ -1.69
VPS50-214ENST00000477935 SEC14L5O43304 696 aa4.49□□□□□ -1.69
VPS50-214ENST00000477935 PLRG1O43660 514 aaKnown RBP4.49□□□□□ -1.69
VPS50-214ENST00000477935 LDB3O75112 727 aa4.49□□□□□ -1.69
VPS50-214ENST00000477935 STBD1O95210 358 aa4.49□□□□□ -1.69
VPS50-214ENST00000477935 CALM1P0DP23 149 aa4.49□□□□□ -1.69
VPS50-214ENST00000477935 CALM2P0DP24 149 aa4.49□□□□□ -1.69
VPS50-214ENST00000477935 CALM3P0DP25 149 aa4.49□□□□□ -1.69
VPS50-214ENST00000477935 ARF4P18085 180 aaPredicted RBP4.49□□□□□ -1.69
VPS50-214ENST00000477935 MARCKSP29966 332 aaPredicted RBP4.49□□□□□ -1.69
VPS50-214ENST00000477935 RPL9P32969 192 aaKnown RBP4.49□□□□□ -1.69
VPS50-214ENST00000477935 ABCD1P33897 745 aa4.49□□□□□ -1.69
VPS50-214ENST00000477935 ARL1P40616 181 aaPredicted RBP4.49□□□□□ -1.69
VPS50-214ENST00000477935 EIF2DP41214 584 aaKnown RBP4.49□□□□□ -1.69
VPS50-214ENST00000477935 TNFRSF4P43489 277 aa4.49□□□□□ -1.69
VPS50-214ENST00000477935 GABRB2P47870 512 aa4.49□□□□□ -1.69
VPS50-214ENST00000477935 IFNAR2P48551 515 aa4.49□□□□□ -1.69
VPS50-214ENST00000477935 BRWD1-AS2P59051 145 aa4.49□□□□□ -1.69
VPS50-214ENST00000477935 PSMC5P62195 406 aa4.49□□□□□ -1.69
VPS50-214ENST00000477935 ASIC1P78348 528 aa4.49□□□□□ -1.69
VPS50-214ENST00000477935 FOXD4Q12950 439 aaPredicted RBP4.49□□□□□ -1.69
VPS50-214ENST00000477935 GPR17Q13304 367 aa4.49□□□□□ -1.69
VPS50-214ENST00000477935 C2orf68Q2NKX9 166 aa4.49□□□□□ -1.69
VPS50-214ENST00000477935 JAKMIP3Q5VZ66 844 aa4.49□□□□□ -1.69
VPS50-214ENST00000477935 ANO5Q75V66 913 aa4.49□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms