RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 IP6K3Q96PC2 410 aa15.05■□□□□ -0
CCDC88B-205ENST00000472524 FAM114A2Q9NRY5 505 aa15.05■□□□□ -0
CCDC88B-205ENST00000472524 LUZP4Q9P127 313 aa15.05■□□□□ -0
CCDC88B-205ENST00000472524 ASIC3Q9UHC3 531 aa15.05■□□□□ -0
CCDC88B-205ENST00000472524 MAP4K5Q9Y4K4 846 aa15.05■□□□□ -0
CCDC88B-205ENST00000472524 SCN3AQ9NY46 2000 aa15.04■□□□□ -0
CCDC88B-205ENST00000472524 MYO1CO00159 1063 aa15.04■□□□□ -0
CCDC88B-205ENST00000472524 MASP2O00187 686 aa15.04■□□□□ -0
CCDC88B-205ENST00000472524 SEMA7AO75326 666 aa15.04■□□□□ -0
CCDC88B-205ENST00000472524 SYF2O95926 243 aaKnown RBP15.04■□□□□ -0
CCDC88B-205ENST00000472524 EIF2S1P05198 315 aaKnown RBP15.04■□□□□ -0
CCDC88B-205ENST00000472524 UMODP07911 640 aa15.04■□□□□ -0
CCDC88B-205ENST00000472524 ERGP11308 486 aa15.04■□□□□ -0
CCDC88B-205ENST00000472524 RPA3P35244 121 aaPredicted RBP15.04■□□□□ -0
CCDC88B-205ENST00000472524 HSP90AA5PQ58FG0 334 aa15.04■□□□□ -0
CCDC88B-205ENST00000472524 WASHC2DQ5SRD0 308 aa15.04■□□□□ -0
CCDC88B-205ENST00000472524 RNASEH2BQ5TBB1 312 aaKnown RBP15.04■□□□□ -0
CCDC88B-205ENST00000472524 FHL5Q5TD97 284 aa15.04■□□□□ -0
CCDC88B-205ENST00000472524 ZNF549Q6P9A3 640 aa15.04■□□□□ -0
CCDC88B-205ENST00000472524 PPP1R32Q7Z5V6 425 aa15.04■□□□□ -0
CCDC88B-205ENST00000472524 DTWD1Q8N5C7 304 aa15.04■□□□□ -0
CCDC88B-205ENST00000472524 SERBP1Q8NC51 408 aaKnown RBP eCLIP15.04■□□□□ -0
CCDC88B-205ENST00000472524 PPFIBP2Q8ND30 876 aa15.04■□□□□ -0
CCDC88B-205ENST00000472524 CALML6Q8TD86 181 aa15.04■□□□□ -0
CCDC88B-205ENST00000472524 FKBP10Q96AY3 582 aa15.04■□□□□ -0
CCDC88B-205ENST00000472524 PTERQ96BW5 349 aa15.04■□□□□ -0
CCDC88B-205ENST00000472524 FER1L6-AS2Q96M78 137 aa15.04■□□□□ -0
CCDC88B-205ENST00000472524 ZNF285Q96NJ3 590 aa15.04■□□□□ -0
CCDC88B-205ENST00000472524 PKP4Q99569 1192 aa15.04■□□□□ -0
CCDC88B-205ENST00000472524 DPH7Q9BTV6 452 aa15.04■□□□□ -0
CCDC88B-205ENST00000472524 MFRPQ9BY79 579 aa15.04■□□□□ -0
CCDC88B-205ENST00000472524 DDX47Q9H0S4 455 aaKnown RBP15.04■□□□□ -0
CCDC88B-205ENST00000472524 SLC6A20Q9NP91 592 aa15.04■□□□□ -0
CCDC88B-205ENST00000472524 MRPS30Q9NP92 439 aaKnown RBP15.04■□□□□ -0
CCDC88B-205ENST00000472524 IARS2Q9NSE4 1012 aaKnown RBP15.04■□□□□ -0
CCDC88B-205ENST00000472524 ABCF3Q9NUQ8 709 aa15.04■□□□□ -0
CCDC88B-205ENST00000472524 P4HTMQ9NXG6 502 aa15.04■□□□□ -0
CCDC88B-205ENST00000472524 FBXO5Q9UKT4 447 aa15.04■□□□□ -0
CCDC88B-205ENST00000472524 PCDHGB7Q9Y5F8 929 aa15.04■□□□□ -0
CCDC88B-205ENST00000472524 LOC105369274A0A096LPK9 316 aa15.03■□□□□ -0
CCDC88B-205ENST00000472524 LOC102723532A0A0G2JNH3 316 aa15.03■□□□□ -0
CCDC88B-205ENST00000472524 CES2O00748 559 aa15.03■□□□□ -0
CCDC88B-205ENST00000472524 DPM1O60762 260 aa15.03■□□□□ -0
CCDC88B-205ENST00000472524 BANF1O75531 89 aa15.03■□□□□ -0
CCDC88B-205ENST00000472524 ERVK-10P10266 1014 aa15.03■□□□□ -0
CCDC88B-205ENST00000472524 PIM1P11309 404 aaPredicted RBP15.03■□□□□ -0
CCDC88B-205ENST00000472524 OR1D4P47884 311 aa15.03■□□□□ -0
CCDC88B-205ENST00000472524 PNLIPRP1P54315 467 aa15.03■□□□□ -0
CCDC88B-205ENST00000472524 DCAF10Q5QP82 559 aa15.03■□□□□ -0
CCDC88B-205ENST00000472524 YOD1Q5VVQ6 348 aaPredicted RBP15.03■□□□□ -0
CCDC88B-205ENST00000472524 SHISA6Q6ZSJ9 500 aa15.03■□□□□ -0
CCDC88B-205ENST00000472524 NEK10Q6ZWH5 1172 aa15.03■□□□□ -0
CCDC88B-205ENST00000472524 COX15Q7KZN9 410 aa15.03■□□□□ -0
CCDC88B-205ENST00000472524 RNF44Q7L0R7 432 aa15.03■□□□□ -0
CCDC88B-205ENST00000472524 OVCH1Q7RTY7 1134 aa15.03■□□□□ -0
CCDC88B-205ENST00000472524 KCNMB4Q86W47 210 aa15.03■□□□□ -0
CCDC88B-205ENST00000472524 CPNE9Q8IYJ1 553 aa15.03■□□□□ -0
CCDC88B-205ENST00000472524 OR4N4Q8N0Y3 316 aa15.03■□□□□ -0
CCDC88B-205ENST00000472524 CLEC1AQ8NC01 280 aa15.03■□□□□ -0
CCDC88B-205ENST00000472524 SMPDL3AQ92484 453 aa15.03■□□□□ -0
CCDC88B-205ENST00000472524 KCNJ9Q92806 393 aa15.03■□□□□ -0
CCDC88B-205ENST00000472524 GPR21Q99679 349 aa15.03■□□□□ -0
CCDC88B-205ENST00000472524 FAM167BQ9BTA0 163 aa15.03■□□□□ -0
CCDC88B-205ENST00000472524 SOX17Q9H6I2 414 aaPredicted RBP15.03■□□□□ -0
CCDC88B-205ENST00000472524 STOX2Q9P2F5 926 aaPredicted RBP15.03■□□□□ -0
CCDC88B-205ENST00000472524 CTSFQ9UBX1 484 aa15.03■□□□□ -0
CCDC88B-205ENST00000472524 PLEKHB1Q9UF11 243 aaPredicted RBP15.03■□□□□ -0
CCDC88B-205ENST00000472524 ZC3H7BQ9UGR2 993 aaKnown RBP15.03■□□□□ -0
CCDC88B-205ENST00000472524 TAC3Q9UHF0 121 aa15.03■□□□□ -0
CCDC88B-205ENST00000472524 MED16Q9Y2X0 877 aa15.03■□□□□ -0
CCDC88B-205ENST00000472524 KLK4Q9Y5K2 254 aa15.03■□□□□ -0
CCDC88B-205ENST00000472524 MAU2Q9Y6X3 613 aa15.03■□□□□ -0
CCDC88B-205ENST00000472524 SPTAN1Q13813 2472 aaKnown RBP15.02■□□□□ -0
CCDC88B-205ENST00000472524 HYKKA2RU49 373 aa15.02■□□□□ -0
CCDC88B-205ENST00000472524 OR2A25A4D2G3 310 aa15.02■□□□□ -0
CCDC88B-205ENST00000472524 FITM1A5D6W6 292 aa15.02■□□□□ -0
CCDC88B-205ENST00000472524 DNALI1O14645 258 aaPredicted RBP15.02■□□□□ -0
CCDC88B-205ENST00000472524 SRPX2O60687 465 aaPredicted RBP15.02■□□□□ -0
CCDC88B-205ENST00000472524 HAUS5O94927 633 aa15.02■□□□□ -0
CCDC88B-205ENST00000472524 MED26O95402 600 aa15.02■□□□□ -0
CCDC88B-205ENST00000472524 MPC1LP0DKB6 136 aa15.02■□□□□ -0
CCDC88B-205ENST00000472524 PGAM1P18669 254 aa15.02■□□□□ -0
CCDC88B-205ENST00000472524 DHX9Q08211 1270 aaKnown RBP15.02■□□□□ -0
CCDC88B-205ENST00000472524 PTK6Q13882 451 aa15.02■□□□□ -0
CCDC88B-205ENST00000472524 CRYMQ14894 314 aa15.02■□□□□ -0
CCDC88B-205ENST00000472524 ARHGAP19Q14CB8 494 aa15.02■□□□□ -0
CCDC88B-205ENST00000472524 NAA25Q14CX7 972 aa15.02■□□□□ -0
CCDC88B-205ENST00000472524 INPP5JQ15735 1006 aaPredicted RBP15.02■□□□□ -0
CCDC88B-205ENST00000472524 NKG7Q16617 165 aa15.02■□□□□ -0
CCDC88B-205ENST00000472524 FAM214AQ32MH5 1076 aa15.02■□□□□ -0
CCDC88B-205ENST00000472524 JMJD6Q6NYC1 403 aaPredicted RBP15.02■□□□□ -0
CCDC88B-205ENST00000472524 PIWIL4Q7Z3Z4 852 aaKnown RBP15.02■□□□□ -0
CCDC88B-205ENST00000472524 LMNTD2Q8IXW0 634 aa15.02■□□□□ -0
CCDC88B-205ENST00000472524 Q8NA96 180 aa15.02■□□□□ -0
CCDC88B-205ENST00000472524 CD200R1Q8TD46 325 aa15.02■□□□□ -0
CCDC88B-205ENST00000472524 SSC4DQ8WTU2 575 aa15.02■□□□□ -0
CCDC88B-205ENST00000472524 INPP5DQ92835 1189 aa15.02■□□□□ -0
CCDC88B-205ENST00000472524 CAPZA3Q96KX2 299 aa15.02■□□□□ -0
CCDC88B-205ENST00000472524 ZFYVE21Q9BQ24 234 aa15.02■□□□□ -0
CCDC88B-205ENST00000472524 AARSD1Q9BTE6 412 aaKnown RBP15.02■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms