RNA–Protein interactions for RNA: ENST00000471702.2

NPHP3-ACAD11-201, Transcript of NPHP3-ACAD11 readthrough (NMD candidate), humanhuman

TSL 2 BASIC

Gene NPHP3-ACAD11, Length 7,784 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-ACAD11-201ENST00000471702 GNAZP19086 355 aa12.96□□□□□ -0.34
NPHP3-ACAD11-201ENST00000471702 VAMP1P23763 118 aa12.96□□□□□ -0.34
NPHP3-ACAD11-201ENST00000471702 GRM5P41594 1212 aa12.96□□□□□ -0.34
NPHP3-ACAD11-201ENST00000471702 GTF2BQ00403 316 aa12.96□□□□□ -0.34
NPHP3-ACAD11-201ENST00000471702 NPAS4Q8IUM7 802 aa12.96□□□□□ -0.34
NPHP3-ACAD11-201ENST00000471702 LRRC52Q8N7C0 313 aa12.96□□□□□ -0.34
NPHP3-ACAD11-201ENST00000471702 FAM156AQ8NDB6 213 aa12.96□□□□□ -0.34
NPHP3-ACAD11-201ENST00000471702 SCAMP5Q8TAC9 235 aa12.96□□□□□ -0.34
NPHP3-ACAD11-201ENST00000471702 ACMSDQ8TDX5 336 aa12.96□□□□□ -0.34
NPHP3-ACAD11-201ENST00000471702 C17orf62Q9BQA9 187 aa12.96□□□□□ -0.34
NPHP3-ACAD11-201ENST00000471702 AMBNQ9NP70 447 aa12.96□□□□□ -0.34
NPHP3-ACAD11-201ENST00000471702 ASTN1O14525 1302 aa12.96□□□□□ -0.34
NPHP3-ACAD11-201ENST00000471702 IFI30P13284 250 aa12.96□□□□□ -0.34
NPHP3-ACAD11-201ENST00000471702 APLP1P51693 650 aa12.96□□□□□ -0.34
NPHP3-ACAD11-201ENST00000471702 CRISP1P54107 249 aa12.96□□□□□ -0.34
NPHP3-ACAD11-201ENST00000471702 ELF3P78545 371 aaPredicted RBP12.96□□□□□ -0.34
NPHP3-ACAD11-201ENST00000471702 SLC5A9Q2M3M2 681 aa12.96□□□□□ -0.34
NPHP3-ACAD11-201ENST00000471702 MMABQ96EY8 250 aaPredicted RBP12.96□□□□□ -0.34
NPHP3-ACAD11-201ENST00000471702 HAO2Q9NYQ3 351 aa12.96□□□□□ -0.34
NPHP3-ACAD11-201ENST00000471702 FKBPLQ9UIM3 349 aa12.96□□□□□ -0.34
NPHP3-ACAD11-201ENST00000471702 MAGI3Q5TCQ9 1506 aa12.95□□□□□ -0.34
NPHP3-ACAD11-201ENST00000471702 TCRBV5S4A2TA0A5A2 114 aa12.95□□□□□ -0.34
NPHP3-ACAD11-201ENST00000471702 MYBPHLA2RUH7 354 aa12.95□□□□□ -0.34
NPHP3-ACAD11-201ENST00000471702 UGT1A9O60656 530 aa12.95□□□□□ -0.34
NPHP3-ACAD11-201ENST00000471702 UGT1A6P19224 532 aa12.95□□□□□ -0.34
NPHP3-ACAD11-201ENST00000471702 UGT1A1P22309 533 aa12.95□□□□□ -0.34
NPHP3-ACAD11-201ENST00000471702 UGT1A4P22310 534 aa12.95□□□□□ -0.34
NPHP3-ACAD11-201ENST00000471702 UGT1A3P35503 534 aa12.95□□□□□ -0.34
NPHP3-ACAD11-201ENST00000471702 MTPNP58546 118 aa12.95□□□□□ -0.34
NPHP3-ACAD11-201ENST00000471702 CLCQ05315 142 aa12.95□□□□□ -0.34
NPHP3-ACAD11-201ENST00000471702 FPGSQ05932 587 aa12.95□□□□□ -0.34
NPHP3-ACAD11-201ENST00000471702 ARCQ7LC44 396 aa12.95□□□□□ -0.34
NPHP3-ACAD11-201ENST00000471702 KIAA1143Q96AT1 154 aaPredicted RBP12.95□□□□□ -0.34
NPHP3-ACAD11-201ENST00000471702 SLC5A7Q9GZV3 580 aa12.95□□□□□ -0.34
NPHP3-ACAD11-201ENST00000471702 FN3KQ9H479 309 aa12.95□□□□□ -0.34
NPHP3-ACAD11-201ENST00000471702 UGT1A7Q9HAW7 530 aa12.95□□□□□ -0.34
NPHP3-ACAD11-201ENST00000471702 UGT1A10Q9HAW8 530 aa12.95□□□□□ -0.34
NPHP3-ACAD11-201ENST00000471702 UGT1A8Q9HAW9 530 aa12.95□□□□□ -0.34
NPHP3-ACAD11-201ENST00000471702 CYTH4Q9UIA0 394 aa12.95□□□□□ -0.34
NPHP3-ACAD11-201ENST00000471702 TMPRSS11EQ9UL52 423 aa12.95□□□□□ -0.34
NPHP3-ACAD11-201ENST00000471702 PLATP00750 562 aa12.95□□□□□ -0.34
NPHP3-ACAD11-201ENST00000471702 JUNP05412 331 aaKnown RBP12.95□□□□□ -0.34
NPHP3-ACAD11-201ENST00000471702 CSKP41240 450 aa12.95□□□□□ -0.34
NPHP3-ACAD11-201ENST00000471702 TRAPPC6BQ86SZ2 158 aa12.95□□□□□ -0.34
NPHP3-ACAD11-201ENST00000471702 PSKH2Q96QS6 385 aa12.95□□□□□ -0.34
NPHP3-ACAD11-201ENST00000471702 TM9SF2Q99805 663 aa12.95□□□□□ -0.34
NPHP3-ACAD11-201ENST00000471702 MKKSQ9NPJ1 570 aaPredicted RBP12.95□□□□□ -0.34
NPHP3-ACAD11-201ENST00000471702 MYH1P12882 1939 aa12.95□□□□□ -0.34
NPHP3-ACAD11-201ENST00000471702 MYH4Q9Y623 1939 aa12.95□□□□□ -0.34
NPHP3-ACAD11-201ENST00000471702 PITPNM1O00562 1244 aa12.95□□□□□ -0.34
NPHP3-ACAD11-201ENST00000471702 CSF2P04141 144 aa12.95□□□□□ -0.34
NPHP3-ACAD11-201ENST00000471702 ID2Q02363 134 aa12.95□□□□□ -0.34
NPHP3-ACAD11-201ENST00000471702 PDK4Q16654 411 aa12.95□□□□□ -0.34
NPHP3-ACAD11-201ENST00000471702 ZDHHC4Q9NPG8 344 aa12.95□□□□□ -0.34
NPHP3-ACAD11-201ENST00000471702 RIMS1Q86UR5 1692 aaKnown RBP12.95□□□□□ -0.34
NPHP3-ACAD11-201ENST00000471702 A6NCN8 305 aa12.95□□□□□ -0.34
NPHP3-ACAD11-201ENST00000471702 FAM155AB1AL88 458 aaPredicted RBP12.95□□□□□ -0.34
NPHP3-ACAD11-201ENST00000471702 KLK1P06870 262 aa12.95□□□□□ -0.34
NPHP3-ACAD11-201ENST00000471702 C8orf89P0DMQ9 161 aa12.95□□□□□ -0.34
NPHP3-ACAD11-201ENST00000471702 CRB2Q5IJ48 1285 aa12.95□□□□□ -0.34
NPHP3-ACAD11-201ENST00000471702 MR1Q95460 341 aa12.95□□□□□ -0.34
NPHP3-ACAD11-201ENST00000471702 LIN37Q96GY3 246 aaPredicted RBP12.95□□□□□ -0.34
NPHP3-ACAD11-201ENST00000471702 IL1RAPQ9NPH3 570 aa12.95□□□□□ -0.34
NPHP3-ACAD11-201ENST00000471702 ECT2LQ008S8 904 aa12.95□□□□□ -0.34
NPHP3-ACAD11-201ENST00000471702 ZNF598Q86UK7 904 aaKnown RBP12.95□□□□□ -0.34
NPHP3-ACAD11-201ENST00000471702 ANKK1Q8NFD2 765 aa12.95□□□□□ -0.34
NPHP3-ACAD11-201ENST00000471702 TMED9Q9BVK6 235 aa12.95□□□□□ -0.34
NPHP3-ACAD11-201ENST00000471702 CCSER2Q9H7U1 834 aa12.95□□□□□ -0.34
NPHP3-ACAD11-201ENST00000471702 B3GAT2Q9NPZ5 323 aa12.95□□□□□ -0.34
NPHP3-ACAD11-201ENST00000471702 BCORL1Q5H9F3 1711 aa12.95□□□□□ -0.34
NPHP3-ACAD11-201ENST00000471702 A0A0G2JPF8 293 aa12.95□□□□□ -0.34
NPHP3-ACAD11-201ENST00000471702 FOXO6A8MYZ6 492 aa12.95□□□□□ -0.34
NPHP3-ACAD11-201ENST00000471702 HNRNPCL3B7ZW38 293 aa12.95□□□□□ -0.34
NPHP3-ACAD11-201ENST00000471702 HSBP1L1C9JCN9 74 aa12.95□□□□□ -0.34
NPHP3-ACAD11-201ENST00000471702 HNRNPCL4P0DMR1 293 aa12.95□□□□□ -0.34
NPHP3-ACAD11-201ENST00000471702 RPS9P46781 194 aaKnown RBP12.95□□□□□ -0.34
NPHP3-ACAD11-201ENST00000471702 NOMO3P69849 1222 aa12.95□□□□□ -0.34
NPHP3-ACAD11-201ENST00000471702 DDR1Q08345 913 aa12.95□□□□□ -0.34
NPHP3-ACAD11-201ENST00000471702 OXR1Q8N573 874 aa12.95□□□□□ -0.34
NPHP3-ACAD11-201ENST00000471702 YIPF7Q8N8F6 280 aa12.95□□□□□ -0.34
NPHP3-ACAD11-201ENST00000471702 AGAP2Q99490 1192 aa12.95□□□□□ -0.34
NPHP3-ACAD11-201ENST00000471702 GDF3Q9NR23 364 aa12.95□□□□□ -0.34
NPHP3-ACAD11-201ENST00000471702 ABCD2Q9UBJ2 740 aa12.95□□□□□ -0.34
NPHP3-ACAD11-201ENST00000471702 PCYOX1Q9UHG3 505 aa12.95□□□□□ -0.34
NPHP3-ACAD11-201ENST00000471702 SNU13P55769 128 aaKnown RBP12.94□□□□□ -0.34
NPHP3-ACAD11-201ENST00000471702 ASB18Q6ZVZ8 466 aa12.94□□□□□ -0.34
NPHP3-ACAD11-201ENST00000471702 HOPXQ9BPY8 73 aaPredicted RBP12.94□□□□□ -0.34
NPHP3-ACAD11-201ENST00000471702 SMG9Q9H0W8 520 aaKnown RBP12.94□□□□□ -0.34
NPHP3-ACAD11-201ENST00000471702 PCDHA2Q9Y5H9 948 aa12.94□□□□□ -0.34
NPHP3-ACAD11-201ENST00000471702 MYOCOSA0A1B0GUC4 107 aa12.94□□□□□ -0.34
NPHP3-ACAD11-201ENST00000471702 VTCN1Q7Z7D3 282 aa12.94□□□□□ -0.34
NPHP3-ACAD11-201ENST00000471702 SLC43A2Q8N370 569 aa12.94□□□□□ -0.34
NPHP3-ACAD11-201ENST00000471702 SCGB1C1Q8TD33 95 aa12.94□□□□□ -0.34
NPHP3-ACAD11-201ENST00000471702 DQX1Q8TE96 717 aaKnown RBP12.94□□□□□ -0.34
NPHP3-ACAD11-201ENST00000471702 MAFIPQ8WZ33 124 aa12.94□□□□□ -0.34
NPHP3-ACAD11-201ENST00000471702 TNFRSF25Q93038 417 aa12.94□□□□□ -0.34
NPHP3-ACAD11-201ENST00000471702 C11orf84Q9BUA3 381 aaPredicted RBP12.94□□□□□ -0.34
NPHP3-ACAD11-201ENST00000471702 TRNAU1APQ9NX07 287 aaKnown RBP12.94□□□□□ -0.34
NPHP3-ACAD11-201ENST00000471702 GIN1Q9NXP7 522 aa12.94□□□□□ -0.34
NPHP3-ACAD11-201ENST00000471702 SLC38A8A6NNN8 435 aa12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms