RNA–Protein interactions for RNA: ENST00000469511.1

PTPN4-209, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 476 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-209ENST00000469511 ZFPM2Q8WW38 1151 aa5.04□□□□□ -1.6
PTPN4-209ENST00000469511 LCN9Q8WX39 176 aa5.04□□□□□ -1.6
PTPN4-209ENST00000469511 VPS35Q96QK1 796 aa5.04□□□□□ -1.6
PTPN4-209ENST00000469511 OR2A14Q96R47 310 aa5.04□□□□□ -1.6
PTPN4-209ENST00000469511 SRPK1Q96SB4 655 aaKnown RBP5.04□□□□□ -1.6
PTPN4-209ENST00000469511 EIF3CQ99613 913 aaKnown RBP5.04□□□□□ -1.6
PTPN4-209ENST00000469511 HGH1Q9BTY7 390 aa5.04□□□□□ -1.6
PTPN4-209ENST00000469511 ASPNQ9BXN1 380 aa5.04□□□□□ -1.6
PTPN4-209ENST00000469511 AP1M1Q9BXS5 423 aa5.04□□□□□ -1.6
PTPN4-209ENST00000469511 SRMSQ9H3Y6 488 aa5.04□□□□□ -1.6
PTPN4-209ENST00000469511 SYTL2Q9HCH5 934 aa5.04□□□□□ -1.6
PTPN4-209ENST00000469511 MAGEE1Q9HCI5 957 aa5.04□□□□□ -1.6
PTPN4-209ENST00000469511 STOML1Q9UBI4 398 aa5.04□□□□□ -1.6
PTPN4-209ENST00000469511 DNPEPQ9ULA0 475 aa5.04□□□□□ -1.6
PTPN4-209ENST00000469511 NPIPA1Q9UND3 350 aa5.04□□□□□ -1.6
PTPN4-209ENST00000469511 RPL26L1Q9UNX3 145 aaKnown RBP5.04□□□□□ -1.6
PTPN4-209ENST00000469511 ICKQ9UPZ9 632 aa5.04□□□□□ -1.6
PTPN4-209ENST00000469511 MAU2Q9Y6X3 613 aa5.04□□□□□ -1.6
PTPN4-209ENST00000469511 SONP18583 2426 aaKnown RBP5.04□□□□□ -1.6
PTPN4-209ENST00000469511 KIAA1549Q9HCM3 1950 aa5.04□□□□□ -1.6
PTPN4-209ENST00000469511 FREM3P0C091 2139 aa5.03□□□□□ -1.6
PTPN4-209ENST00000469511 TRAV17A0A0B4J275 112 aa5.03□□□□□ -1.6
PTPN4-209ENST00000469511 HMX2A2RU54 273 aa5.03□□□□□ -1.6
PTPN4-209ENST00000469511 ANKRD62A6NC57 917 aa5.03□□□□□ -1.6
PTPN4-209ENST00000469511 VSTM2BA6NLU5 285 aa5.03□□□□□ -1.6
PTPN4-209ENST00000469511 FAM90A27PA6NNH2 459 aa5.03□□□□□ -1.6
PTPN4-209ENST00000469511 B2RBV5 119 aa5.03□□□□□ -1.6
PTPN4-209ENST00000469511 PDPK1O15530 556 aa5.03□□□□□ -1.6
PTPN4-209ENST00000469511 ZSCAN9O15535 394 aaPredicted RBP5.03□□□□□ -1.6
PTPN4-209ENST00000469511 PROM1O43490 865 aa5.03□□□□□ -1.6
PTPN4-209ENST00000469511 NRP2O60462 931 aa5.03□□□□□ -1.6
PTPN4-209ENST00000469511 KLHL41O60662 606 aa5.03□□□□□ -1.6
PTPN4-209ENST00000469511 TOXO94900 526 aa5.03□□□□□ -1.6
PTPN4-209ENST00000469511 LY6G6DO95868 133 aa5.03□□□□□ -1.6
PTPN4-209ENST00000469511 ONECUT2O95948 504 aa5.03□□□□□ -1.6
PTPN4-209ENST00000469511 HPP00738 406 aa5.03□□□□□ -1.6
PTPN4-209ENST00000469511 PRR35P0CG20 571 aa5.03□□□□□ -1.6
PTPN4-209ENST00000469511 COX6A1P12074 109 aa5.03□□□□□ -1.6
PTPN4-209ENST00000469511 VCLP18206 1134 aa5.03□□□□□ -1.6
PTPN4-209ENST00000469511 CCNCP24863 283 aa5.03□□□□□ -1.6
PTPN4-209ENST00000469511 GRIA3P42263 894 aa5.03□□□□□ -1.6
PTPN4-209ENST00000469511 DLX5P56178 289 aa5.03□□□□□ -1.6
PTPN4-209ENST00000469511 SLC25A11Q02978 314 aaKnown RBP5.03□□□□□ -1.6
PTPN4-209ENST00000469511 EEF1A2Q05639 463 aaKnown RBP5.03□□□□□ -1.6
PTPN4-209ENST00000469511 KLC1Q07866 573 aa5.03□□□□□ -1.6
PTPN4-209ENST00000469511 GTF2H3Q13889 308 aa5.03□□□□□ -1.6
PTPN4-209ENST00000469511 PAFAH1B3Q15102 231 aaKnown RBP5.03□□□□□ -1.6
PTPN4-209ENST00000469511 TPD52L1Q16890 204 aaPredicted RBP5.03□□□□□ -1.6
PTPN4-209ENST00000469511 LONRF1Q17RB8 773 aa5.03□□□□□ -1.6
PTPN4-209ENST00000469511 DPCR1Q3MIW9 517 aa5.03□□□□□ -1.6
PTPN4-209ENST00000469511 ZNF658BQ4V348 819 aaPredicted RBP5.03□□□□□ -1.6
PTPN4-209ENST00000469511 ANKRD39Q53RE8 183 aa5.03□□□□□ -1.6
PTPN4-209ENST00000469511 E4F1Q66K89 784 aaPredicted RBP5.03□□□□□ -1.6
PTPN4-209ENST00000469511 ATG9BQ674R7 924 aa5.03□□□□□ -1.6
PTPN4-209ENST00000469511 PDPK2PQ6A1A2 396 aa5.03□□□□□ -1.6
PTPN4-209ENST00000469511 MRM1Q6IN84 353 aaKnown RBP5.03□□□□□ -1.6
PTPN4-209ENST00000469511 HIBCHQ6NVY1 386 aaPredicted RBP5.03□□□□□ -1.6
PTPN4-209ENST00000469511 MTFR2Q6P444 385 aa5.03□□□□□ -1.6
PTPN4-209ENST00000469511 SPESP1Q6UW49 350 aa5.03□□□□□ -1.6
PTPN4-209ENST00000469511 CEP128Q6ZU80 1094 aa5.03□□□□□ -1.6
PTPN4-209ENST00000469511 C22orf34Q6ZV56 151 aa5.03□□□□□ -1.6
PTPN4-209ENST00000469511 FAM214BQ7L5A3 538 aa5.03□□□□□ -1.6
PTPN4-209ENST00000469511 TAOK1Q7L7X3 1001 aa5.03□□□□□ -1.6
PTPN4-209ENST00000469511 IRF2BP2Q7Z5L9 587 aa5.03□□□□□ -1.6
PTPN4-209ENST00000469511 KRTAP1-3Q8IUG1 177 aa5.03□□□□□ -1.6
PTPN4-209ENST00000469511 CCDC71Q8IV32 467 aaPredicted RBP5.03□□□□□ -1.6
PTPN4-209ENST00000469511 PQLC3Q8N755 202 aa5.03□□□□□ -1.6
PTPN4-209ENST00000469511 ACVR1CQ8NER5 493 aa5.03□□□□□ -1.6
PTPN4-209ENST00000469511 OR2L2Q8NH16 312 aa5.03□□□□□ -1.6
PTPN4-209ENST00000469511 PROKR1Q8TCW9 393 aa5.03□□□□□ -1.6
PTPN4-209ENST00000469511 COG1Q8WTW3 980 aa5.03□□□□□ -1.6
PTPN4-209ENST00000469511 TADA1Q96BN2 335 aa5.03□□□□□ -1.6
PTPN4-209ENST00000469511 RBM41Q96IZ5 413 aaKnown RBP5.03□□□□□ -1.6
PTPN4-209ENST00000469511 GPR137Q96N19 417 aa5.03□□□□□ -1.6
PTPN4-209ENST00000469511 TTC25Q96NG3 672 aa5.03□□□□□ -1.6
PTPN4-209ENST00000469511 TSGA13Q96PP4 275 aa5.03□□□□□ -1.6
PTPN4-209ENST00000469511 SIGLEC12Q96PQ1 595 aa5.03□□□□□ -1.6
PTPN4-209ENST00000469511 OR52A5Q9H2C5 316 aa5.03□□□□□ -1.6
PTPN4-209ENST00000469511 FAM96AQ9H5X1 160 aa5.03□□□□□ -1.6
PTPN4-209ENST00000469511 KLHL1Q9NR64 748 aa5.03□□□□□ -1.6
PTPN4-209ENST00000469511 TPSG1Q9NRR2 321 aa5.03□□□□□ -1.6
PTPN4-209ENST00000469511 TXLNGQ9NUQ3 528 aa5.03□□□□□ -1.6
PTPN4-209ENST00000469511 ANKRD10Q9NXR5 420 aa5.03□□□□□ -1.6
PTPN4-209ENST00000469511 IL17CQ9P0M4 197 aa5.03□□□□□ -1.6
PTPN4-209ENST00000469511 LRFN1Q9P244 771 aa5.03□□□□□ -1.6
PTPN4-209ENST00000469511 MYO1AQ9UBC5 1043 aa5.03□□□□□ -1.6
PTPN4-209ENST00000469511 CIDEBQ9UHD4 219 aa5.03□□□□□ -1.6
PTPN4-209ENST00000469511 ST6GALNAC2Q9UJ37 374 aa5.03□□□□□ -1.6
PTPN4-209ENST00000469511 HOOK1Q9UJC3 728 aaKnown RBP5.03□□□□□ -1.6
PTPN4-209ENST00000469511 PLAGL1Q9UM63 463 aa5.03□□□□□ -1.6
PTPN4-209ENST00000469511 PCDHB10Q9UN67 800 aa5.03□□□□□ -1.6
PTPN4-209ENST00000469511 ASB1Q9Y576 335 aa5.03□□□□□ -1.6
PTPN4-209ENST00000469511 ARHGAP21Q5T5U3 1957 aa5.03□□□□□ -1.6
PTPN4-209ENST00000469511 CHD3Q12873 2000 aaKnown RBP5.02□□□□□ -1.61
PTPN4-209ENST00000469511 HEATR5AQ86XA9 2040 aa5.02□□□□□ -1.61
PTPN4-209ENST00000469511 TLDC2A0PJX2 215 aa5.02□□□□□ -1.61
PTPN4-209ENST00000469511 DYTNA2CJ06 578 aa5.02□□□□□ -1.61
PTPN4-209ENST00000469511 C2orf74A8MZ97 194 aa5.02□□□□□ -1.61
PTPN4-209ENST00000469511 CCL22O00626 93 aa5.02□□□□□ -1.61
PTPN4-209ENST00000469511 KCNJ13O60928 360 aa5.02□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms