RNA–Protein interactions for RNA: ENST00000468872.5

LSM5-209, Transcript of LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated, human

TSL 2

Gene LSM5, Length 636 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LSM5-209	ENST00000468872	CHRNA7	P36544	502 aa		4.65	□□□□□ -1.67
LSM5-209	ENST00000468872	KCNJ1	P48048	391 aa		4.65	□□□□□ -1.67
LSM5-209	ENST00000468872	MFAP3	P55082	362 aa		4.65	□□□□□ -1.67
LSM5-209	ENST00000468872	CDO1	Q16878	200 aa		4.65	□□□□□ -1.67
LSM5-209	ENST00000468872	TWISTNB	Q3B726	338 aa	Predicted RBP	4.65	□□□□□ -1.67
LSM5-209	ENST00000468872	TECRL	Q5HYJ1	363 aa		4.65	□□□□□ -1.67
LSM5-209	ENST00000468872	SUSD4	Q5VX71	490 aa		4.65	□□□□□ -1.67
LSM5-209	ENST00000468872	NRARP	Q7Z6K4	114 aa		4.65	□□□□□ -1.67
LSM5-209	ENST00000468872	RTN4RL2	Q86UN3	420 aa		4.65	□□□□□ -1.67
LSM5-209	ENST00000468872	DZIP1	Q86YF9	867 aa	Known RBP	4.65	□□□□□ -1.67
LSM5-209	ENST00000468872	KLHL7	Q8IXQ5	586 aa		4.65	□□□□□ -1.67
LSM5-209	ENST00000468872	CDK20	Q8IZL9	346 aa		4.65	□□□□□ -1.67
LSM5-209	ENST00000468872	ATAD1	Q8NBU5	361 aa		4.65	□□□□□ -1.67
LSM5-209	ENST00000468872	KLHDC9	Q8NEP7	349 aa		4.65	□□□□□ -1.67
LSM5-209	ENST00000468872	ZNF354B	Q96LW1	612 aa		4.65	□□□□□ -1.67
LSM5-209	ENST00000468872	RHNO1	Q9BSD3	238 aa		4.65	□□□□□ -1.67
LSM5-209	ENST00000468872	MIS12	Q9H081	205 aa		4.65	□□□□□ -1.67
LSM5-209	ENST00000468872	RSPH9	Q9H1X1	276 aa	Predicted RBP	4.65	□□□□□ -1.67
LSM5-209	ENST00000468872	MINDY3	Q9H8M7	445 aa		4.65	□□□□□ -1.67
LSM5-209	ENST00000468872	ARMCX3	Q9UH62	379 aa	Predicted RBP	4.65	□□□□□ -1.67
LSM5-209	ENST00000468872	ERRFI1	Q9UJM3	462 aa	Predicted RBP	4.65	□□□□□ -1.67
LSM5-209	ENST00000468872	CDH7	Q9ULB5	785 aa		4.65	□□□□□ -1.67
LSM5-209	ENST00000468872	IGSF1	Q8N6C5	1336 aa		4.65	□□□□□ -1.67
LSM5-209	ENST00000468872	HMGXB3	Q12766	1538 aa		4.64	□□□□□ -1.67
LSM5-209	ENST00000468872		A0A1W2PPW3	197 aa		4.64	□□□□□ -1.67
LSM5-209	ENST00000468872	ANKRD61	A6NGH8	418 aa		4.64	□□□□□ -1.67
LSM5-209	ENST00000468872	ERVV-2	B6SEH9	535 aa		4.64	□□□□□ -1.67
LSM5-209	ENST00000468872	ARPC2	O15144	300 aa		4.64	□□□□□ -1.67
LSM5-209	ENST00000468872	SLC22A2	O15244	555 aa		4.64	□□□□□ -1.67
LSM5-209	ENST00000468872	ST8SIA3	O43173	380 aa		4.64	□□□□□ -1.67
LSM5-209	ENST00000468872	PPIP5K2	O43314	1243 aa		4.64	□□□□□ -1.67
LSM5-209	ENST00000468872	PRAF2	O60831	178 aa		4.64	□□□□□ -1.67
LSM5-209	ENST00000468872	PRKRA	O75569	313 aa	Known RBP	4.64	□□□□□ -1.67
LSM5-209	ENST00000468872	PGLS	O95336	258 aa		4.64	□□□□□ -1.67
LSM5-209	ENST00000468872	CRYAA	P02489	173 aa		4.64	□□□□□ -1.67
LSM5-209	ENST00000468872	ATP1A1	P05023	1023 aa	Known RBP	4.64	□□□□□ -1.67
LSM5-209	ENST00000468872	UMOD	P07911	640 aa		4.64	□□□□□ -1.67
LSM5-209	ENST00000468872	IGHV4-38-2	P0DP08	117 aa		4.64	□□□□□ -1.67
LSM5-209	ENST00000468872	LIF	P15018	202 aa		4.64	□□□□□ -1.67
LSM5-209	ENST00000468872	EFNA1	P20827	205 aa	Predicted RBP	4.64	□□□□□ -1.67
LSM5-209	ENST00000468872	ALDH3A2	P51648	485 aa		4.64	□□□□□ -1.67
LSM5-209	ENST00000468872	C1QTNF8	P60827	252 aa		4.64	□□□□□ -1.67
LSM5-209	ENST00000468872	WDR38	Q5JTN6	314 aa		4.64	□□□□□ -1.67
LSM5-209	ENST00000468872	CCNYL2	Q5T2Q4	361 aa		4.64	□□□□□ -1.67
LSM5-209	ENST00000468872	NOTUM	Q6P988	496 aa		4.64	□□□□□ -1.67
LSM5-209	ENST00000468872	CYB5D1	Q6P9G0	228 aa		4.64	□□□□□ -1.67
LSM5-209	ENST00000468872	GBP6	Q6ZN66	633 aa		4.64	□□□□□ -1.67
LSM5-209	ENST00000468872	C15orf39	Q6ZRI6	1047 aa		4.64	□□□□□ -1.67
LSM5-209	ENST00000468872	IL17REL	Q6ZVW7	336 aa		4.64	□□□□□ -1.67
LSM5-209	ENST00000468872	SMIM29	Q86T20	159 aa		4.64	□□□□□ -1.67
LSM5-209	ENST00000468872	HOOK3	Q86VS8	718 aa		4.64	□□□□□ -1.67
LSM5-209	ENST00000468872	SNX32	Q86XE0	403 aa		4.64	□□□□□ -1.67
LSM5-209	ENST00000468872	CCDC170	Q8IYT3	715 aa		4.64	□□□□□ -1.67
LSM5-209	ENST00000468872	APCDD1	Q8J025	514 aa		4.64	□□□□□ -1.67
LSM5-209	ENST00000468872	LGI2	Q8N0V4	545 aa		4.64	□□□□□ -1.67
LSM5-209	ENST00000468872	EID3	Q8N140	333 aa		4.64	□□□□□ -1.67
LSM5-209	ENST00000468872	RYBP	Q8N488	228 aa	Predicted RBP	4.64	□□□□□ -1.67
LSM5-209	ENST00000468872	LMNTD1	Q8N9Z9	388 aa		4.64	□□□□□ -1.67
LSM5-209	ENST00000468872	UXS1	Q8NBZ7	420 aa		4.64	□□□□□ -1.67
LSM5-209	ENST00000468872	OR10Q1	Q8NGQ4	319 aa		4.64	□□□□□ -1.67
LSM5-209	ENST00000468872	PHLDA1	Q8WV24	401 aa	Predicted RBP	4.64	□□□□□ -1.67
LSM5-209	ENST00000468872	RIT1	Q92963	219 aa		4.64	□□□□□ -1.67
LSM5-209	ENST00000468872	BSCL2	Q96G97	398 aa	Predicted RBP	4.64	□□□□□ -1.67
LSM5-209	ENST00000468872	PARK7	Q99497	189 aa	Known RBP	4.64	□□□□□ -1.67
LSM5-209	ENST00000468872	CCDC3	Q9BQI4	270 aa		4.64	□□□□□ -1.67
LSM5-209	ENST00000468872	TLE6	Q9H808	572 aa		4.64	□□□□□ -1.67
LSM5-209	ENST00000468872	GSN-AS1	Q9NRJ2	163 aa		4.64	□□□□□ -1.67
LSM5-209	ENST00000468872	ZKSCAN7	Q9P0L1	754 aa	Predicted RBP	4.64	□□□□□ -1.67
LSM5-209	ENST00000468872	ITGA11	Q9UKX5	1188 aa		4.64	□□□□□ -1.67
LSM5-209	ENST00000468872	STUB1	Q9UNE7	303 aa		4.64	□□□□□ -1.67
LSM5-209	ENST00000468872	RIPK3	Q9Y572	518 aa		4.64	□□□□□ -1.67
LSM5-209	ENST00000468872	RPS6KA5	O75582	802 aa		4.63	□□□□□ -1.67
LSM5-209	ENST00000468872	LUC7L3	O95232	432 aa	Known RBP	4.63	□□□□□ -1.67
LSM5-209	ENST00000468872	IGLV2-11	P01706	119 aa		4.63	□□□□□ -1.67
LSM5-209	ENST00000468872	RLN1	P04808	185 aa		4.63	□□□□□ -1.67
LSM5-209	ENST00000468872	FRMD6-AS1	P0C7T7	363 aa		4.63	□□□□□ -1.67
LSM5-209	ENST00000468872	CDH3	P22223	829 aa		4.63	□□□□□ -1.67
LSM5-209	ENST00000468872	OAS2	P29728	719 aa	Known RBP	4.63	□□□□□ -1.67
LSM5-209	ENST00000468872	NKX2-1	P43699	371 aa	Predicted RBP	4.63	□□□□□ -1.67
LSM5-209	ENST00000468872	RPL21	P46778	160 aa	Known RBP	4.63	□□□□□ -1.67
LSM5-209	ENST00000468872	RASGEF1B	Q0VAM2	473 aa		4.63	□□□□□ -1.67
LSM5-209	ENST00000468872	ILF2	Q12905	390 aa	Known RBP	4.63	□□□□□ -1.67
LSM5-209	ENST00000468872	ACCSL	Q4AC99	568 aa		4.63	□□□□□ -1.67
LSM5-209	ENST00000468872	ANKRD20A4	Q4UJ75	823 aa		4.63	□□□□□ -1.67
LSM5-209	ENST00000468872	ZC2HC1C	Q53FD0	456 aa	Predicted RBP	4.63	□□□□□ -1.67
LSM5-209	ENST00000468872	ANKRD20A8P	Q5CZ79	823 aa		4.63	□□□□□ -1.67
LSM5-209	ENST00000468872	XKR3	Q5GH77	459 aa		4.63	□□□□□ -1.67
LSM5-209	ENST00000468872	ANKRD20A2	Q5SQ80	823 aa		4.63	□□□□□ -1.67
LSM5-209	ENST00000468872	OTUD3	Q5T2D3	398 aa	Predicted RBP	4.63	□□□□□ -1.67
LSM5-209	ENST00000468872	ANKRD20A1	Q5TYW2	823 aa		4.63	□□□□□ -1.67
LSM5-209	ENST00000468872	ANKRD20A3	Q5VUR7	823 aa		4.63	□□□□□ -1.67
LSM5-209	ENST00000468872	GDPD4	Q6W3E5	623 aa		4.63	□□□□□ -1.67
LSM5-209	ENST00000468872	LINC00696	Q6ZRV3	163 aa		4.63	□□□□□ -1.67
LSM5-209	ENST00000468872	NUP93	Q8N1F7	819 aa		4.63	□□□□□ -1.67
LSM5-209	ENST00000468872	OR52N5	Q8NH56	324 aa		4.63	□□□□□ -1.67
LSM5-209	ENST00000468872	GRK7	Q8WTQ7	553 aa		4.63	□□□□□ -1.67
LSM5-209	ENST00000468872	FCAMR	Q8WWV6	532 aa		4.63	□□□□□ -1.67
LSM5-209	ENST00000468872	NSL1	Q96IY1	281 aa		4.63	□□□□□ -1.67
LSM5-209	ENST00000468872	URM1	Q9BTM9	101 aa	Known RBP	4.63	□□□□□ -1.67
LSM5-209	ENST00000468872	DNAI2	Q9GZS0	605 aa		4.63	□□□□□ -1.67

Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms