RNA–Protein interactions for RNA: ENST00000466781.5

HPS4-209, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 1 (best)

Gene HPS4, Length 6,136 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-209ENST00000466781 LIMK2P53671 638 aa8.51□□□□□ -1.05
HPS4-209ENST00000466781 FOXK1P85037 733 aa8.51□□□□□ -1.05
HPS4-209ENST00000466781 NFKB2Q00653 900 aa8.51□□□□□ -1.05
HPS4-209ENST00000466781 MXD1Q05195 221 aa8.51□□□□□ -1.05
HPS4-209ENST00000466781 MADCAM1Q13477 382 aa8.51□□□□□ -1.05
HPS4-209ENST00000466781 SLBPQ14493 270 aaKnown RBP eCLIP8.51□□□□□ -1.05
HPS4-209ENST00000466781 CARTPTQ16568 116 aa8.51□□□□□ -1.05
HPS4-209ENST00000466781 SLC9A4Q6AI14 798 aa8.51□□□□□ -1.05
HPS4-209ENST00000466781 PDE12Q6L8Q7 609 aaKnown RBP8.51□□□□□ -1.05
HPS4-209ENST00000466781 NOXRED1Q6NXP6 359 aa8.51□□□□□ -1.05
HPS4-209ENST00000466781 SLITRK4Q8IW52 837 aa8.51□□□□□ -1.05
HPS4-209ENST00000466781 PQLC1Q8N2U9 271 aa8.51□□□□□ -1.05
HPS4-209ENST00000466781 NINJ1Q92982 152 aa8.51□□□□□ -1.05
HPS4-209ENST00000466781 TCEAL3Q969E4 200 aa8.51□□□□□ -1.05
HPS4-209ENST00000466781 TEPSINQ96N21 525 aa8.51□□□□□ -1.05
HPS4-209ENST00000466781 PCDHB18PQ96TA0 734 aa8.51□□□□□ -1.05
HPS4-209ENST00000466781 YIPF4Q9BSR8 244 aa8.51□□□□□ -1.05
HPS4-209ENST00000466781 NUSAP1Q9BXS6 441 aaKnown RBP8.51□□□□□ -1.05
HPS4-209ENST00000466781 SUV39H2Q9H5I1 410 aa8.51□□□□□ -1.05
HPS4-209ENST00000466781 PAK6Q9NQU5 681 aaPredicted RBP8.51□□□□□ -1.05
HPS4-209ENST00000466781 TLR6Q9Y2C9 796 aa8.51□□□□□ -1.05
HPS4-209ENST00000466781 PCDHGB2Q9Y5G2 931 aa8.51□□□□□ -1.05
HPS4-209ENST00000466781 NID2Q14112 1375 aa8.51□□□□□ -1.05
HPS4-209ENST00000466781 CSNK2A2P19784 350 aaPredicted RBP8.51□□□□□ -1.05
HPS4-209ENST00000466781 EFNA1P20827 205 aaPredicted RBP8.51□□□□□ -1.05
HPS4-209ENST00000466781 ARPC4P59998 168 aa8.51□□□□□ -1.05
HPS4-209ENST00000466781 DECR1Q16698 335 aa8.51□□□□□ -1.05
HPS4-209ENST00000466781 LDLRAD1Q5T700 205 aa8.51□□□□□ -1.05
HPS4-209ENST00000466781 C1orf189Q5VU69 101 aa8.51□□□□□ -1.05
HPS4-209ENST00000466781 HTRA1Q92743 480 aa8.51□□□□□ -1.05
HPS4-209ENST00000466781 RFT1Q96AA3 541 aa8.51□□□□□ -1.05
HPS4-209ENST00000466781 RIOK2Q9BVS4 552 aaKnown RBP8.51□□□□□ -1.05
HPS4-209ENST00000466781 TMEM121BQ9BXQ6 578 aaPredicted RBP8.51□□□□□ -1.05
HPS4-209ENST00000466781 UCK2Q9BZX2 261 aa8.51□□□□□ -1.05
HPS4-209ENST00000466781 COL2A1P02458 1487 aaPredicted RBP8.51□□□□□ -1.05
HPS4-209ENST00000466781 SH3D21A4FU49 640 aa8.51□□□□□ -1.05
HPS4-209ENST00000466781 E7EQ34 232 aa8.51□□□□□ -1.05
HPS4-209ENST00000466781 ZNF670-ZNF695F2Z2N8 137 aa8.51□□□□□ -1.05
HPS4-209ENST00000466781 E2F3O00716 465 aa8.51□□□□□ -1.05
HPS4-209ENST00000466781 ITIH1P19827 911 aa8.51□□□□□ -1.05
HPS4-209ENST00000466781 ALG10Q5BKT4 473 aa8.51□□□□□ -1.05
HPS4-209ENST00000466781 MON1BQ7L1V2 547 aa8.51□□□□□ -1.05
HPS4-209ENST00000466781 PLD5Q8N7P1 536 aa8.51□□□□□ -1.05
HPS4-209ENST00000466781 OR10A6Q8NH74 314 aa8.51□□□□□ -1.05
HPS4-209ENST00000466781 NAT14Q8WUY8 206 aa8.51□□□□□ -1.05
HPS4-209ENST00000466781 NCSTNQ92542 709 aa8.51□□□□□ -1.05
HPS4-209ENST00000466781 BORCS5Q969J3 196 aa8.51□□□□□ -1.05
HPS4-209ENST00000466781 S100A14Q9HCY8 104 aa8.51□□□□□ -1.05
HPS4-209ENST00000466781 FBXL12Q9NXK8 326 aa8.51□□□□□ -1.05
HPS4-209ENST00000466781 ZDHHC3Q9NYG2 299 aa8.51□□□□□ -1.05
HPS4-209ENST00000466781 COMMD3-BMI1R4GMX3 469 aa8.51□□□□□ -1.05
HPS4-209ENST00000466781 GLI3P10071 1580 aa8.5□□□□□ -1.05
HPS4-209ENST00000466781 A0A0G2JN53 185 aa8.5□□□□□ -1.05
HPS4-209ENST00000466781 ADH1BP00325 375 aa8.5□□□□□ -1.05
HPS4-209ENST00000466781 GP1BBP13224 206 aa8.5□□□□□ -1.05
HPS4-209ENST00000466781 HOXB2P14652 356 aa8.5□□□□□ -1.05
HPS4-209ENST00000466781 PVALBP20472 110 aaPredicted RBP8.5□□□□□ -1.05
HPS4-209ENST00000466781 DRD4P21917 467 aa8.5□□□□□ -1.05
HPS4-209ENST00000466781 DAOAP59103 153 aa8.5□□□□□ -1.05
HPS4-209ENST00000466781 ZFP69Q49AA0 526 aa8.5□□□□□ -1.05
HPS4-209ENST00000466781 LRRC69Q6ZNQ3 347 aa8.5□□□□□ -1.05
HPS4-209ENST00000466781 TRABD2AQ86V40 505 aa8.5□□□□□ -1.05
HPS4-209ENST00000466781 PGAM4Q8N0Y7 254 aa8.5□□□□□ -1.05
HPS4-209ENST00000466781 NATD1Q8N6N6 113 aa8.5□□□□□ -1.05
HPS4-209ENST00000466781 GSTCDQ8NEC7 633 aa8.5□□□□□ -1.05
HPS4-209ENST00000466781 DNAJB8Q8NHS0 232 aa8.5□□□□□ -1.05
HPS4-209ENST00000466781 CCDC107Q8WV48 283 aa8.5□□□□□ -1.05
HPS4-209ENST00000466781 ARMC5Q96C12 935 aa8.5□□□□□ -1.05
HPS4-209ENST00000466781 CNDP2Q96KP4 475 aaKnown RBP8.5□□□□□ -1.05
HPS4-209ENST00000466781 KREMEN1Q96MU8 473 aa8.5□□□□□ -1.05
HPS4-209ENST00000466781 METTL8Q9H825 291 aaKnown RBP8.5□□□□□ -1.05
HPS4-209ENST00000466781 SP140LQ9H930 580 aa8.5□□□□□ -1.05
HPS4-209ENST00000466781 ERVK-5Q9HDB9 667 aa8.5□□□□□ -1.05
HPS4-209ENST00000466781 BRD7Q9NPI1 651 aa8.5□□□□□ -1.05
HPS4-209ENST00000466781 SMPD3Q9NY59 655 aaPredicted RBP8.5□□□□□ -1.05
HPS4-209ENST00000466781 CDH22Q9UJ99 828 aa8.5□□□□□ -1.05
HPS4-209ENST00000466781 DCKP27707 260 aa8.5□□□□□ -1.05
HPS4-209ENST00000466781 EIF1AXP47813 144 aaKnown RBP8.5□□□□□ -1.05
HPS4-209ENST00000466781 CLRN1P58418 232 aa8.5□□□□□ -1.05
HPS4-209ENST00000466781 GBE1Q04446 702 aa8.5□□□□□ -1.05
HPS4-209ENST00000466781 MRPL49Q13405 166 aaKnown RBP8.5□□□□□ -1.05
HPS4-209ENST00000466781 GANABQ14697 944 aaKnown RBP8.5□□□□□ -1.05
HPS4-209ENST00000466781 CRTC2Q53ET0 693 aaPredicted RBP8.5□□□□□ -1.05
HPS4-209ENST00000466781 PAMR1Q6UXH9 720 aa8.5□□□□□ -1.05
HPS4-209ENST00000466781 ZBTB46Q86UZ6 589 aa8.5□□□□□ -1.05
HPS4-209ENST00000466781 ZDHHC21Q8IVQ6 265 aa8.5□□□□□ -1.05
HPS4-209ENST00000466781 ZNF101Q8IZC7 436 aa8.5□□□□□ -1.05
HPS4-209ENST00000466781 PYROXD2Q8N2H3 581 aa8.5□□□□□ -1.05
HPS4-209ENST00000466781 C1orf127Q8N9H9 656 aa8.5□□□□□ -1.05
HPS4-209ENST00000466781 GLB1L3Q8NCI6 653 aaPredicted RBP8.5□□□□□ -1.05
HPS4-209ENST00000466781 DNAAF1Q8NEP3 725 aa8.5□□□□□ -1.05
HPS4-209ENST00000466781 ABHD5Q8WTS1 349 aa8.5□□□□□ -1.05
HPS4-209ENST00000466781 ROPN1LQ96C74 230 aa8.5□□□□□ -1.05
HPS4-209ENST00000466781 CMTM7Q96FZ5 175 aa8.5□□□□□ -1.05
HPS4-209ENST00000466781 BRF2Q9HAW0 419 aa8.5□□□□□ -1.05
HPS4-209ENST00000466781 CNTN3Q9P232 1028 aa8.5□□□□□ -1.05
HPS4-209ENST00000466781 C9IYK1 514 aa8.5□□□□□ -1.05
HPS4-209ENST00000466781 K7EPI3 171 aa8.5□□□□□ -1.05
HPS4-209ENST00000466781 CDC7O00311 574 aa8.5□□□□□ -1.05
HPS4-209ENST00000466781 IFNA21P01568 189 aa8.5□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms