RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 KIR3DL1P43629 444 aa8.67□□□□□ -1.02
SYNE1-217ENST00000466159 STT3AP46977 705 aa8.67□□□□□ -1.02
SYNE1-217ENST00000466159 NTHL1P78549 312 aa8.67□□□□□ -1.02
SYNE1-217ENST00000466159 ABHD18Q0P651 414 aa8.67□□□□□ -1.02
SYNE1-217ENST00000466159 KCNAB2Q13303 367 aa8.67□□□□□ -1.02
SYNE1-217ENST00000466159 UGT8Q16880 541 aa8.67□□□□□ -1.02
SYNE1-217ENST00000466159 LRRC26Q2I0M4 334 aa8.67□□□□□ -1.02
SYNE1-217ENST00000466159 HENMT1Q5T8I9 393 aaKnown RBP8.67□□□□□ -1.02
SYNE1-217ENST00000466159 PLPP4Q5VZY2 271 aa8.67□□□□□ -1.02
SYNE1-217ENST00000466159 ANKRD26P1Q6NSI1 321 aa8.67□□□□□ -1.02
SYNE1-217ENST00000466159 ELMSAN1Q6PJG2 1045 aa8.67□□□□□ -1.02
SYNE1-217ENST00000466159 TMEM26Q6ZUK4 368 aa8.67□□□□□ -1.02
SYNE1-217ENST00000466159 GALNT10Q86SR1 603 aa8.67□□□□□ -1.02
SYNE1-217ENST00000466159 THOC6Q86W42 341 aaKnown RBP8.67□□□□□ -1.02
SYNE1-217ENST00000466159 SYT12Q8IV01 421 aa8.67□□□□□ -1.02
SYNE1-217ENST00000466159 C8orf59Q8N0T1 100 aaPredicted RBP8.67□□□□□ -1.02
SYNE1-217ENST00000466159 CDC26Q8NHZ8 85 aa8.67□□□□□ -1.02
SYNE1-217ENST00000466159 FBXL8Q96CD0 374 aa8.67□□□□□ -1.02
SYNE1-217ENST00000466159 MED8Q96G25 268 aa8.67□□□□□ -1.02
SYNE1-217ENST00000466159 PYURFQ96I23 114 aa8.67□□□□□ -1.02
SYNE1-217ENST00000466159 REXO5Q96IC2 774 aaKnown RBP8.67□□□□□ -1.02
SYNE1-217ENST00000466159 MRGPRX3Q96LB0 322 aa8.67□□□□□ -1.02
SYNE1-217ENST00000466159 ZSWIM3Q96MP5 696 aa8.67□□□□□ -1.02
SYNE1-217ENST00000466159 PLXNA2O75051 1894 aa8.67□□□□□ -1.02
SYNE1-217ENST00000466159 ZBBXA8MT70 800 aa8.67□□□□□ -1.02
SYNE1-217ENST00000466159 NPIPB8E9PQR5 432 aa8.67□□□□□ -1.02
SYNE1-217ENST00000466159 H3BMQ9 156 aa8.67□□□□□ -1.02
SYNE1-217ENST00000466159 YY2O15391 372 aa8.67□□□□□ -1.02
SYNE1-217ENST00000466159 FOXD2O60548 495 aaPredicted RBP8.67□□□□□ -1.02
SYNE1-217ENST00000466159 ZNF682O95780 498 aa8.67□□□□□ -1.02
SYNE1-217ENST00000466159 RHOP08100 348 aa8.67□□□□□ -1.02
SYNE1-217ENST00000466159 MAP4P27816 1152 aaKnown RBP8.67□□□□□ -1.02
SYNE1-217ENST00000466159 MAPK10P53779 464 aa8.67□□□□□ -1.02
SYNE1-217ENST00000466159 HPCAP84074 193 aa8.67□□□□□ -1.02
SYNE1-217ENST00000466159 NAE1Q13564 534 aa8.67□□□□□ -1.02
SYNE1-217ENST00000466159 DOC2AQ14183 400 aa8.67□□□□□ -1.02
SYNE1-217ENST00000466159 LAPTM4AQ15012 233 aa8.67□□□□□ -1.02
SYNE1-217ENST00000466159 MEP1AQ16819 746 aa8.67□□□□□ -1.02
SYNE1-217ENST00000466159 LRRC23Q53EV4 343 aaPredicted RBP8.67□□□□□ -1.02
SYNE1-217ENST00000466159 ZCCHC8Q6NZY4 707 aaKnown RBP8.67□□□□□ -1.02
SYNE1-217ENST00000466159 ZNF773Q6PK81 442 aa8.67□□□□□ -1.02
SYNE1-217ENST00000466159 NEK10Q6ZWH5 1172 aa8.67□□□□□ -1.02
SYNE1-217ENST00000466159 ARHGAP22Q7Z5H3 698 aa8.67□□□□□ -1.02
SYNE1-217ENST00000466159 R3HCC1LQ7Z5L2 792 aaKnown RBP8.67□□□□□ -1.02
SYNE1-217ENST00000466159 RBM23Q86U06 439 aaKnown RBP8.67□□□□□ -1.02
SYNE1-217ENST00000466159 RASGRP3Q8IV61 690 aa8.67□□□□□ -1.02
SYNE1-217ENST00000466159 ADHFE1Q8IWW8 467 aa8.67□□□□□ -1.02
SYNE1-217ENST00000466159 HOMEZQ8IX15 550 aa8.67□□□□□ -1.02
SYNE1-217ENST00000466159 RAVER1Q8IY67 606 aaKnown RBP8.67□□□□□ -1.02
SYNE1-217ENST00000466159 CHPFQ8IZ52 775 aa8.67□□□□□ -1.02
SYNE1-217ENST00000466159 FAM9CQ8IZT9 166 aa8.67□□□□□ -1.02
SYNE1-217ENST00000466159 ZCCHC7Q8N3Z6 543 aaKnown RBP8.67□□□□□ -1.02
SYNE1-217ENST00000466159 SVOPLQ8N434 492 aa8.67□□□□□ -1.02
SYNE1-217ENST00000466159 RASGEF1AQ8N9B8 481 aa8.67□□□□□ -1.02
SYNE1-217ENST00000466159 DDHD1Q8NEL9 900 aa8.67□□□□□ -1.02
SYNE1-217ENST00000466159 PJA1Q8NG27 643 aa8.67□□□□□ -1.02
SYNE1-217ENST00000466159 WDR20Q8TBZ3 569 aa8.67□□□□□ -1.02
SYNE1-217ENST00000466159 DTNBP1Q96EV8 351 aa8.67□□□□□ -1.02
SYNE1-217ENST00000466159 COG8Q96MW5 612 aa8.67□□□□□ -1.02
SYNE1-217ENST00000466159 OR4K3Q96R72 315 aa8.67□□□□□ -1.02
SYNE1-217ENST00000466159 PANX1Q96RD7 426 aa8.67□□□□□ -1.02
SYNE1-217ENST00000466159 RBM4BQ9BQ04 359 aaKnown RBP8.67□□□□□ -1.02
SYNE1-217ENST00000466159 RBM4Q9BWF3 364 aaKnown RBP8.67□□□□□ -1.02
SYNE1-217ENST00000466159 CRISPLD2Q9H0B8 497 aa8.67□□□□□ -1.02
SYNE1-217ENST00000466159 MAGIXQ9H6Y5 334 aa8.67□□□□□ -1.02
SYNE1-217ENST00000466159 VNN3Q9NY84 501 aa8.67□□□□□ -1.02
SYNE1-217ENST00000466159 MTCL1Q9Y4B5 1905 aaKnown RBP8.67□□□□□ -1.02
SYNE1-217ENST00000466159 ZNF701M0R085 212 aaPredicted RBP8.67□□□□□ -1.02
SYNE1-217ENST00000466159 CLIC1O00299 241 aa8.67□□□□□ -1.02
SYNE1-217ENST00000466159 FPGTO14772 594 aa8.67□□□□□ -1.02
SYNE1-217ENST00000466159 SCN2BO60939 215 aa8.67□□□□□ -1.02
SYNE1-217ENST00000466159 PSIP1O75475 530 aaKnown RBP8.67□□□□□ -1.02
SYNE1-217ENST00000466159 RECQL5O94762 991 aaPredicted RBP8.67□□□□□ -1.02
SYNE1-217ENST00000466159 CPSF4O95639 269 aaKnown RBP8.67□□□□□ -1.02
SYNE1-217ENST00000466159 FTH1P02794 183 aa8.67□□□□□ -1.02
SYNE1-217ENST00000466159 GSTM1P09488 218 aa8.67□□□□□ -1.02
SYNE1-217ENST00000466159 SYN1P17600 705 aa8.67□□□□□ -1.02
SYNE1-217ENST00000466159 ENGP17813 658 aa8.67□□□□□ -1.02
SYNE1-217ENST00000466159 PRPS1L1P21108 318 aa8.67□□□□□ -1.02
SYNE1-217ENST00000466159 MATN1P21941 496 aa8.67□□□□□ -1.02
SYNE1-217ENST00000466159 CRHBPP24387 322 aa8.67□□□□□ -1.02
SYNE1-217ENST00000466159 DCKP27707 260 aa8.67□□□□□ -1.02
SYNE1-217ENST00000466159 BDKRB1P46663 353 aa8.67□□□□□ -1.02
SYNE1-217ENST00000466159 TPD52P55327 224 aaPredicted RBP8.67□□□□□ -1.02
SYNE1-217ENST00000466159 WNT3P56703 355 aa8.67□□□□□ -1.02
SYNE1-217ENST00000466159 DCDC1P59894 354 aa8.67□□□□□ -1.02
SYNE1-217ENST00000466159 GSTM4Q03013 218 aa8.67□□□□□ -1.02
SYNE1-217ENST00000466159 MTAPQ13126 283 aa8.67□□□□□ -1.02
SYNE1-217ENST00000466159 CBX2Q14781 532 aaPredicted RBP8.67□□□□□ -1.02
SYNE1-217ENST00000466159 CTU2Q2VPK5 515 aaKnown RBP8.67□□□□□ -1.02
SYNE1-217ENST00000466159 LIPJQ5W064 366 aa8.67□□□□□ -1.02
SYNE1-217ENST00000466159 TTC23Q5W5X9 447 aa8.67□□□□□ -1.02
SYNE1-217ENST00000466159 AGTRAPQ6RW13 159 aa8.67□□□□□ -1.02
SYNE1-217ENST00000466159 ZNF621Q6ZSS3 439 aa8.67□□□□□ -1.02
SYNE1-217ENST00000466159 CLECL1Q8IZS7 167 aa8.67□□□□□ -1.02
SYNE1-217ENST00000466159 EID3Q8N140 333 aa8.67□□□□□ -1.02
SYNE1-217ENST00000466159 TRAM1L1Q8N609 369 aa8.67□□□□□ -1.02
SYNE1-217ENST00000466159 ZNF555Q8NEP9 628 aa8.67□□□□□ -1.02
SYNE1-217ENST00000466159 OR5K1Q8NHB7 308 aa8.67□□□□□ -1.02
SYNE1-217ENST00000466159 PNPT1Q8TCS8 783 aaKnown RBP8.67□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms