RNA–Protein interactions for RNA: ENST00000463007.5

HDAC4-208, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,158 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-208ENST00000463007 TTPALQ9BTX7 342 aa12.1□□□□□ -0.47
HDAC4-208ENST00000463007 EXOSC4Q9NPD3 245 aaKnown RBP12.1□□□□□ -0.47
HDAC4-208ENST00000463007 GKN1Q9NS71 199 aa12.1□□□□□ -0.47
HDAC4-208ENST00000463007 STOML2Q9UJZ1 356 aa12.1□□□□□ -0.47
HDAC4-208ENST00000463007 RAI2Q9Y5P3 530 aa12.1□□□□□ -0.47
HDAC4-208ENST00000463007 ZFP37Q9Y6Q3 630 aaPredicted RBP12.1□□□□□ -0.47
HDAC4-208ENST00000463007 KDELR3O43731 214 aa12.1□□□□□ -0.47
HDAC4-208ENST00000463007 HOXB8P17481 243 aaPredicted RBP12.1□□□□□ -0.47
HDAC4-208ENST00000463007 LPOP22079 712 aaPredicted RBP12.1□□□□□ -0.47
HDAC4-208ENST00000463007 GADD45AP24522 165 aa12.1□□□□□ -0.47
HDAC4-208ENST00000463007 S100A3P33764 101 aa12.1□□□□□ -0.47
HDAC4-208ENST00000463007 KRT20P35900 424 aa12.1□□□□□ -0.47
HDAC4-208ENST00000463007 CDH4P55283 916 aa12.1□□□□□ -0.47
HDAC4-208ENST00000463007 NOGQ13253 232 aa12.1□□□□□ -0.47
HDAC4-208ENST00000463007 AFTPHQ6ULP2 937 aa12.1□□□□□ -0.47
HDAC4-208ENST00000463007 FAM217AQ8IXS0 508 aa12.1□□□□□ -0.47
HDAC4-208ENST00000463007 OR8H2Q8N162 312 aa12.1□□□□□ -0.47
HDAC4-208ENST00000463007 S100ZQ8WXG8 99 aa12.1□□□□□ -0.47
HDAC4-208ENST00000463007 APOLD1Q96LR9 279 aa12.1□□□□□ -0.47
HDAC4-208ENST00000463007 BEX2Q9BXY8 128 aa12.1□□□□□ -0.47
HDAC4-208ENST00000463007 TP63Q9H3D4 680 aaPredicted RBP12.1□□□□□ -0.47
HDAC4-208ENST00000463007 TPK1Q9H3S4 243 aa12.1□□□□□ -0.47
HDAC4-208ENST00000463007 LRTM1Q9HBL6 345 aa12.1□□□□□ -0.47
HDAC4-208ENST00000463007 C8orf4Q9NR00 106 aa12.1□□□□□ -0.47
HDAC4-208ENST00000463007 ERVK13-1Q9NX77 482 aa12.1□□□□□ -0.47
HDAC4-208ENST00000463007 OPTCQ9UBM4 332 aa12.1□□□□□ -0.47
HDAC4-208ENST00000463007 DENND4CQ5VZ89 1909 aa12.1□□□□□ -0.47
HDAC4-208ENST00000463007 SMIM30A4D0T7 59 aa12.1□□□□□ -0.47
HDAC4-208ENST00000463007 F5H5T6 163 aa12.1□□□□□ -0.47
HDAC4-208ENST00000463007 H7C4K7 107 aa12.1□□□□□ -0.47
HDAC4-208ENST00000463007 SLC22A1O15245 554 aa12.1□□□□□ -0.47
HDAC4-208ENST00000463007 COCHO43405 550 aa12.1□□□□□ -0.47
HDAC4-208ENST00000463007 SLC25A14O95258 325 aaPredicted RBP12.1□□□□□ -0.47
HDAC4-208ENST00000463007 CXCL10P02778 98 aa12.1□□□□□ -0.47
HDAC4-208ENST00000463007 CA5AP35218 305 aa12.1□□□□□ -0.47
HDAC4-208ENST00000463007 GNPDA1P46926 289 aa12.1□□□□□ -0.47
HDAC4-208ENST00000463007 MRPS15P82914 257 aaKnown RBP12.1□□□□□ -0.47
HDAC4-208ENST00000463007 VLDLRP98155 873 aa12.1□□□□□ -0.47
HDAC4-208ENST00000463007 DDX59Q5T1V6 619 aaKnown RBP eCLIP12.1□□□□□ -0.471e-7■■■■□ 25.7
HDAC4-208ENST00000463007 CXorf57Q6NSI4 855 aaKnown RBP12.1□□□□□ -0.47
HDAC4-208ENST00000463007 LKAAEAR1Q8TD35 194 aa12.1□□□□□ -0.47
HDAC4-208ENST00000463007 MAL2Q969L2 176 aa12.1□□□□□ -0.47
HDAC4-208ENST00000463007 NUSAP1Q9BXS6 441 aaKnown RBP12.1□□□□□ -0.47
HDAC4-208ENST00000463007 ELOVL2Q9NXB9 296 aa12.1□□□□□ -0.47
HDAC4-208ENST00000463007 DNMT3LQ9UJW3 386 aa12.1□□□□□ -0.47
HDAC4-208ENST00000463007 ITIH1P19827 911 aa12.09□□□□□ -0.47
HDAC4-208ENST00000463007 RAB15P59190 212 aa12.09□□□□□ -0.47
HDAC4-208ENST00000463007 LRRC73Q5JTD7 316 aa12.09□□□□□ -0.47
HDAC4-208ENST00000463007 EFL1Q7Z2Z2 1120 aaKnown RBP12.09□□□□□ -0.47
HDAC4-208ENST00000463007 TTC30BQ8N4P2 665 aa12.09□□□□□ -0.47
HDAC4-208ENST00000463007 FBXO22Q8NEZ5 403 aa12.09□□□□□ -0.47
HDAC4-208ENST00000463007 ATL1Q8WXF7 558 aa12.09□□□□□ -0.47
HDAC4-208ENST00000463007 VWCEQ96DN2 955 aa12.09□□□□□ -0.47
HDAC4-208ENST00000463007 ZNF382Q96SR6 550 aa12.09□□□□□ -0.47
HDAC4-208ENST00000463007 CDK5RAP1Q96SZ6 601 aaKnown RBP12.09□□□□□ -0.47
HDAC4-208ENST00000463007 BBS2Q9BXC9 721 aa12.09□□□□□ -0.47
HDAC4-208ENST00000463007 OR51E2Q9H255 320 aa12.09□□□□□ -0.47
HDAC4-208ENST00000463007 UBA2Q9UBT2 640 aaPredicted RBP12.09□□□□□ -0.47
HDAC4-208ENST00000463007 B3GNT3Q9Y2A9 372 aa12.09□□□□□ -0.47
HDAC4-208ENST00000463007 TESMINQ9Y4I5 508 aa12.09□□□□□ -0.47
HDAC4-208ENST00000463007 BACE2Q9Y5Z0 518 aa12.09□□□□□ -0.47
HDAC4-208ENST00000463007 DNAH14Q0VDD8 3507 aa12.09□□□□□ -0.47
HDAC4-208ENST00000463007 TTC34A8MYJ7 566 aa12.09□□□□□ -0.47
HDAC4-208ENST00000463007 RFXANKO14593 260 aa12.09□□□□□ -0.47
HDAC4-208ENST00000463007 CCNKO75909 580 aa12.09□□□□□ -0.47
HDAC4-208ENST00000463007 STC2O76061 302 aa12.09□□□□□ -0.47
HDAC4-208ENST00000463007 KRT75O95678 551 aa12.09□□□□□ -0.47
HDAC4-208ENST00000463007 GBX1Q14549 363 aa12.09□□□□□ -0.47
HDAC4-208ENST00000463007 DMC1Q14565 340 aa12.09□□□□□ -0.47
HDAC4-208ENST00000463007 IRAK1BP1Q5VVH5 260 aa12.09□□□□□ -0.47
HDAC4-208ENST00000463007 CHST9Q7L1S5 443 aa12.09□□□□□ -0.47
HDAC4-208ENST00000463007 SELENOMQ8WWX9 145 aa12.09□□□□□ -0.47
HDAC4-208ENST00000463007 WBP2Q969T9 261 aa12.09□□□□□ -0.47
HDAC4-208ENST00000463007 PYURFQ96I23 114 aa12.09□□□□□ -0.47
HDAC4-208ENST00000463007 PRRG3Q9BZD7 231 aa12.09□□□□□ -0.47
HDAC4-208ENST00000463007 TNKS2Q9H2K2 1166 aa12.09□□□□□ -0.47
HDAC4-208ENST00000463007 ACOT13Q9NPJ3 140 aa12.09□□□□□ -0.47
HDAC4-208ENST00000463007 DCAF13Q9NV06 445 aaKnown RBP12.09□□□□□ -0.47
HDAC4-208ENST00000463007 USE1Q9NZ43 259 aa12.09□□□□□ -0.47
HDAC4-208ENST00000463007 NOX1Q9Y5S8 564 aa12.09□□□□□ -0.47
HDAC4-208ENST00000463007 PNMA8CA0A1B0GUJ8 204 aa12.08□□□□□ -0.48
HDAC4-208ENST00000463007 AREL1O15033 823 aa12.08□□□□□ -0.48
HDAC4-208ENST00000463007 ANKRD28O15084 1053 aa12.08□□□□□ -0.48
HDAC4-208ENST00000463007 RGS14O43566 566 aa12.08□□□□□ -0.48
HDAC4-208ENST00000463007 KLK8O60259 260 aa12.08□□□□□ -0.48
HDAC4-208ENST00000463007 GREM1O60565 184 aa12.08□□□□□ -0.48
HDAC4-208ENST00000463007 ABLIM3O94929 683 aa12.08□□□□□ -0.48
HDAC4-208ENST00000463007 KCNK2O95069 426 aa12.08□□□□□ -0.48
HDAC4-208ENST00000463007 GABARAPO95166 117 aa12.08□□□□□ -0.48
HDAC4-208ENST00000463007 OTCP00480 354 aa12.08□□□□□ -0.48
HDAC4-208ENST00000463007 BCKDHAP12694 445 aa12.08□□□□□ -0.48
HDAC4-208ENST00000463007 CD9P21926 228 aa12.08□□□□□ -0.48
HDAC4-208ENST00000463007 POU1F1P28069 291 aa12.08□□□□□ -0.48
HDAC4-208ENST00000463007 OR1E2P47887 323 aa12.08□□□□□ -0.48
HDAC4-208ENST00000463007 MYO7AQ13402 2215 aa12.08□□□□□ -0.48
HDAC4-208ENST00000463007 TAB1Q15750 504 aa12.08□□□□□ -0.48
HDAC4-208ENST00000463007 CPZQ66K79 652 aa12.08□□□□□ -0.48
HDAC4-208ENST00000463007 NEK10Q6ZWH5 1172 aa12.08□□□□□ -0.48
HDAC4-208ENST00000463007 DPP10Q8N608 796 aa12.08□□□□□ -0.48
HDAC4-208ENST00000463007 SPPL2AQ8TCT8 520 aa12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms