RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 RGS6P49758 472 aa11.39□□□□□ -0.59
CPSF3-202ENST00000460593 PROX2Q3B8N5 592 aa11.39□□□□□ -0.59
CPSF3-202ENST00000460593 BPHLQ86WA6 291 aaPredicted RBP11.39□□□□□ -0.59
CPSF3-202ENST00000460593 STX19Q8N4C7 294 aa11.39□□□□□ -0.59
CPSF3-202ENST00000460593 RNF175Q8N4F7 328 aa11.39□□□□□ -0.59
CPSF3-202ENST00000460593 AADATQ8N5Z0 425 aa11.39□□□□□ -0.59
CPSF3-202ENST00000460593 CD200R1Q8TD46 325 aa11.39□□□□□ -0.59
CPSF3-202ENST00000460593 GPR152Q8TDT2 470 aa11.39□□□□□ -0.59
CPSF3-202ENST00000460593 IGSF8Q969P0 613 aa11.39□□□□□ -0.59
CPSF3-202ENST00000460593 RNF31Q96EP0 1072 aa11.39□□□□□ -0.59
CPSF3-202ENST00000460593 MED30Q96HR3 178 aa11.39□□□□□ -0.59
CPSF3-202ENST00000460593 HSH2DQ96JZ2 352 aa11.39□□□□□ -0.59
CPSF3-202ENST00000460593 QTRT2Q9H974 415 aaKnown RBP11.39□□□□□ -0.59
CPSF3-202ENST00000460593 CCNB1IP1Q9NPC3 277 aa11.39□□□□□ -0.59
CPSF3-202ENST00000460593 FKBPLQ9UIM3 349 aa11.39□□□□□ -0.59
CPSF3-202ENST00000460593 PEX16Q9Y5Y5 336 aa11.39□□□□□ -0.59
CPSF3-202ENST00000460593 LAMA3Q16787 3333 aa11.39□□□□□ -0.59
CPSF3-202ENST00000460593 A0A1W2PQ72 361 aa11.39□□□□□ -0.59
CPSF3-202ENST00000460593 WWP2O00308 870 aa11.39□□□□□ -0.59
CPSF3-202ENST00000460593 STX16O14662 325 aa11.39□□□□□ -0.59
CPSF3-202ENST00000460593 FGF10O15520 208 aaPredicted RBP11.39□□□□□ -0.59
CPSF3-202ENST00000460593 GLUD1P00367 558 aa11.39□□□□□ -0.59
CPSF3-202ENST00000460593 DARSP14868 501 aaKnown RBP11.39□□□□□ -0.59
CPSF3-202ENST00000460593 DDOSTP39656 456 aa11.39□□□□□ -0.59
CPSF3-202ENST00000460593 MAGEA11P43364 429 aa11.39□□□□□ -0.59
CPSF3-202ENST00000460593 GZMMP51124 257 aa11.39□□□□□ -0.59
CPSF3-202ENST00000460593 ZNF280AP59817 542 aaPredicted RBP11.39□□□□□ -0.59
CPSF3-202ENST00000460593 CXCR4P61073 352 aa11.39□□□□□ -0.59
CPSF3-202ENST00000460593 ST3GAL4Q11206 333 aa11.39□□□□□ -0.59
CPSF3-202ENST00000460593 TYSND1Q2T9J0 566 aa11.39□□□□□ -0.59
CPSF3-202ENST00000460593 PARP15Q460N3 678 aa11.39□□□□□ -0.59
CPSF3-202ENST00000460593 YIF1BQ5BJH7 314 aa11.39□□□□□ -0.59
CPSF3-202ENST00000460593 ZRANB3Q5FWF4 1079 aa11.39□□□□□ -0.59
CPSF3-202ENST00000460593 TAPT1Q6NXT6 567 aa11.39□□□□□ -0.59
CPSF3-202ENST00000460593 RGL4Q8IZJ4 473 aa11.39□□□□□ -0.59
CPSF3-202ENST00000460593 CDC26Q8NHZ8 85 aa11.39□□□□□ -0.59
CPSF3-202ENST00000460593 TRMT61AQ96FX7 289 aaKnown RBP11.39□□□□□ -0.59
CPSF3-202ENST00000460593 CPPED1Q9BRF8 314 aaPredicted RBP11.39□□□□□ -0.59
CPSF3-202ENST00000460593 NXF2Q9GZY0 626 aaKnown RBP11.39□□□□□ -0.59
CPSF3-202ENST00000460593 ABCB8Q9NUT2 735 aa11.39□□□□□ -0.59
CPSF3-202ENST00000460593 CCL27Q9Y4X3 112 aa11.39□□□□□ -0.59
CPSF3-202ENST00000460593 LOC285095A0A1B0GVY8 99 aa11.38□□□□□ -0.59
CPSF3-202ENST00000460593 A0A1W2PQH9 124 aa11.38□□□□□ -0.59
CPSF3-202ENST00000460593 UNCXA6NJT0 531 aa11.38□□□□□ -0.59
CPSF3-202ENST00000460593 E5RI56 91 aa11.38□□□□□ -0.59
CPSF3-202ENST00000460593 TSC22D2O75157 780 aa11.38□□□□□ -0.59
CPSF3-202ENST00000460593 NUDT7P0C024 238 aa11.38□□□□□ -0.59
CPSF3-202ENST00000460593 DNAJA1P31689 397 aaKnown RBP11.38□□□□□ -0.59
CPSF3-202ENST00000460593 UQCRC1P31930 480 aa11.38□□□□□ -0.59
CPSF3-202ENST00000460593 MRPL19P49406 292 aaKnown RBP11.38□□□□□ -0.59
CPSF3-202ENST00000460593 IL2P60568 153 aa11.38□□□□□ -0.59
CPSF3-202ENST00000460593 GPR162Q16538 588 aa11.38□□□□□ -0.59
CPSF3-202ENST00000460593 GNASQ5JWF2 1037 aa11.38□□□□□ -0.59
CPSF3-202ENST00000460593 LRRC66Q68CR7 880 aa11.38□□□□□ -0.59
CPSF3-202ENST00000460593 SCD5Q86SK9 330 aa11.38□□□□□ -0.59
CPSF3-202ENST00000460593 MDGA1Q8NFP4 955 aa11.38□□□□□ -0.59
CPSF3-202ENST00000460593 KBTBD8Q8NFY9 601 aa11.38□□□□□ -0.59
CPSF3-202ENST00000460593 MCCC1Q96RQ3 725 aaPredicted RBP11.38□□□□□ -0.59
CPSF3-202ENST00000460593 GDF15Q99988 308 aa11.38□□□□□ -0.59
CPSF3-202ENST00000460593 RTP3Q9BQQ7 232 aa11.38□□□□□ -0.59
CPSF3-202ENST00000460593 ELP3Q9H9T3 547 aa11.38□□□□□ -0.59
CPSF3-202ENST00000460593 SNTG1Q9NSN8 517 aa11.38□□□□□ -0.59
CPSF3-202ENST00000460593 ELOVL2Q9NXB9 296 aa11.38□□□□□ -0.59
CPSF3-202ENST00000460593 PSORS1C1Q9UIG5 152 aa11.38□□□□□ -0.59
CPSF3-202ENST00000460593 HAS3O00219 553 aa11.38□□□□□ -0.59
CPSF3-202ENST00000460593 FABP3P05413 133 aa11.38□□□□□ -0.59
CPSF3-202ENST00000460593 RGRP47804 291 aa11.38□□□□□ -0.59
CPSF3-202ENST00000460593 ALDH6A1Q02252 535 aaKnown RBP11.38□□□□□ -0.59
CPSF3-202ENST00000460593 DMC1Q14565 340 aa11.38□□□□□ -0.59
CPSF3-202ENST00000460593 CACHD1Q5VU97 1274 aa11.38□□□□□ -0.59
CPSF3-202ENST00000460593 AFMIDQ63HM1 303 aa11.38□□□□□ -0.59
CPSF3-202ENST00000460593 GALNT7Q86SF2 657 aa11.38□□□□□ -0.59
CPSF3-202ENST00000460593 MIB1Q86YT6 1006 aa11.38□□□□□ -0.59
CPSF3-202ENST00000460593 SCN4BQ8IWT1 228 aa11.38□□□□□ -0.59
CPSF3-202ENST00000460593 ZNF557Q8N988 423 aaPredicted RBP11.38□□□□□ -0.59
CPSF3-202ENST00000460593 SIMC1Q8NDZ2 872 aa11.38□□□□□ -0.59
CPSF3-202ENST00000460593 PCNPQ8WW12 178 aaKnown RBP11.38□□□□□ -0.59
CPSF3-202ENST00000460593 SLC7A6Q92536 515 aa11.38□□□□□ -0.59
CPSF3-202ENST00000460593 PIK3R3Q92569 461 aa11.38□□□□□ -0.59
CPSF3-202ENST00000460593 BARHL1Q9BZE3 327 aa11.38□□□□□ -0.59
CPSF3-202ENST00000460593 IL1RAPQ9NPH3 570 aa11.38□□□□□ -0.59
CPSF3-202ENST00000460593 SERHLQ9NQF3 203 aa11.38□□□□□ -0.59
CPSF3-202ENST00000460593 OGDHLQ9ULD0 1010 aa11.38□□□□□ -0.59
CPSF3-202ENST00000460593 GPX5O75715 221 aa11.38□□□□□ -0.59
CPSF3-202ENST00000460593 IGLV3-25P01717 112 aa11.38□□□□□ -0.59
CPSF3-202ENST00000460593 OPN1SWP03999 348 aa11.38□□□□□ -0.59
CPSF3-202ENST00000460593 BCKDHAP12694 445 aa11.38□□□□□ -0.59
CPSF3-202ENST00000460593 FPR1P21462 350 aa11.38□□□□□ -0.59
CPSF3-202ENST00000460593 RPS19P39019 145 aaKnown RBP11.38□□□□□ -0.59
CPSF3-202ENST00000460593 SOX3P41225 446 aa11.38□□□□□ -0.59
CPSF3-202ENST00000460593 ELP6Q0PNE2 266 aa11.38□□□□□ -0.59
CPSF3-202ENST00000460593 SF1Q15637 639 aaKnown RBP11.38□□□□□ -0.59
CPSF3-202ENST00000460593 ZNF79Q15937 498 aa11.38□□□□□ -0.59
CPSF3-202ENST00000460593 CPSF6Q16630 551 aaKnown RBP eCLIP11.38□□□□□ -0.59
CPSF3-202ENST00000460593 TIGD5Q53EQ6 642 aa11.38□□□□□ -0.59
CPSF3-202ENST00000460593 NADSYN1Q6IA69 706 aa11.38□□□□□ -0.59
CPSF3-202ENST00000460593 OR4F3Q6IEY1 312 aa11.38□□□□□ -0.59
CPSF3-202ENST00000460593 CFAP52Q8N1V2 620 aa11.38□□□□□ -0.59
CPSF3-202ENST00000460593 DNAJC22Q8N4W6 341 aa11.38□□□□□ -0.59
CPSF3-202ENST00000460593 DTX3Q8N9I9 347 aa11.38□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 55.5 ms