RNA–Protein interactions for RNA: ENST00000453046.5

SQSTM1-204, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 572 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-204ENST00000453046 RPS18P62269 152 aaKnown RBP17.38■□□□□ 0.37
SQSTM1-204ENST00000453046 TLE1Q04724 770 aa17.38■□□□□ 0.37
SQSTM1-204ENST00000453046 HSPA14Q0VDF9 509 aa17.38■□□□□ 0.37
SQSTM1-204ENST00000453046 SEMA3AQ14563 771 aa17.38■□□□□ 0.37
SQSTM1-204ENST00000453046 PRAMEF17Q5VTA0 474 aa17.38■□□□□ 0.37
SQSTM1-204ENST00000453046 SPESP1Q6UW49 350 aa17.38■□□□□ 0.37
SQSTM1-204ENST00000453046 TIFABQ6ZNK6 161 aa17.38■□□□□ 0.37
SQSTM1-204ENST00000453046 SYVN1Q86TM6 617 aa17.38■□□□□ 0.37
SQSTM1-204ENST00000453046 KRT222Q8N1A0 295 aa17.38■□□□□ 0.37
SQSTM1-204ENST00000453046 SLC38A9Q8NBW4 561 aa17.38■□□□□ 0.37
SQSTM1-204ENST00000453046 OR1L3Q8NH93 324 aa17.38■□□□□ 0.37
SQSTM1-204ENST00000453046 OR5K2Q8NHB8 316 aa17.38■□□□□ 0.37
SQSTM1-204ENST00000453046 LRFN5Q96NI6 719 aa17.38■□□□□ 0.37
SQSTM1-204ENST00000453046 CHST8Q9H2A9 424 aa17.38■□□□□ 0.37
SQSTM1-204ENST00000453046 ACTR5Q9H9F9 607 aaPredicted RBP17.38■□□□□ 0.37
SQSTM1-204ENST00000453046 FBXO6Q9NRD1 293 aaPredicted RBP17.38■□□□□ 0.37
SQSTM1-204ENST00000453046 ANAPC2Q9UJX6 822 aa17.38■□□□□ 0.37
SQSTM1-204ENST00000453046 FLNBO75369 2602 aaKnown RBP17.38■□□□□ 0.37
SQSTM1-204ENST00000453046 HMX2A2RU54 273 aa17.37■□□□□ 0.37
SQSTM1-204ENST00000453046 E7EQ34 232 aa17.37■□□□□ 0.37
SQSTM1-204ENST00000453046 MEN1O00255 615 aa17.37■□□□□ 0.37
SQSTM1-204ENST00000453046 S1PR4O95977 384 aa17.37■□□□□ 0.37
SQSTM1-204ENST00000453046 AHSGP02765 367 aa17.37■□□□□ 0.37
SQSTM1-204ENST00000453046 MAGEA12P43365 314 aa17.37■□□□□ 0.37
SQSTM1-204ENST00000453046 ITGA1P56199 1179 aa17.37■□□□□ 0.37
SQSTM1-204ENST00000453046 MAGOHP61326 146 aaKnown RBP17.37■□□□□ 0.37
SQSTM1-204ENST00000453046 ABRQ12979 859 aa17.37■□□□□ 0.37
SQSTM1-204ENST00000453046 BMPR2Q13873 1038 aa17.37■□□□□ 0.37
SQSTM1-204ENST00000453046 TRIM73Q86UV7 250 aa17.37■□□□□ 0.37
SQSTM1-204ENST00000453046 GPR135Q8IZ08 494 aa17.37■□□□□ 0.37
SQSTM1-204ENST00000453046 THAP4Q8WY91 577 aa17.37■□□□□ 0.37
SQSTM1-204ENST00000453046 OR6C2Q9NZP2 312 aa17.37■□□□□ 0.37
SQSTM1-204ENST00000453046 FAM95CA0A1B0GW59 222 aa17.36■□□□□ 0.37
SQSTM1-204ENST00000453046 NDUFS3O75489 264 aa17.36■□□□□ 0.37
SQSTM1-204ENST00000453046 CHRM5P08912 532 aaPredicted RBP17.36■□□□□ 0.37
SQSTM1-204ENST00000453046 MSL3P1P0C860 447 aa17.36■□□□□ 0.37
SQSTM1-204ENST00000453046 UGT2B7P16662 529 aa17.36■□□□□ 0.37
SQSTM1-204ENST00000453046 CCR7P32248 378 aa17.36■□□□□ 0.37
SQSTM1-204ENST00000453046 CCNFP41002 786 aa17.36■□□□□ 0.37
SQSTM1-204ENST00000453046 ADARP55265 1226 aaKnown RBP17.36■□□□□ 0.37
SQSTM1-204ENST00000453046 UGT8Q16880 541 aa17.36■□□□□ 0.37
SQSTM1-204ENST00000453046 PLEKHS1Q5SXH7 462 aa17.36■□□□□ 0.37
SQSTM1-204ENST00000453046 MROH9Q5TGP6 573 aa17.36■□□□□ 0.37
SQSTM1-204ENST00000453046 CDHR3Q6ZTQ4 885 aa17.36■□□□□ 0.37
SQSTM1-204ENST00000453046 LDB1Q86U70 411 aaPredicted RBP17.36■□□□□ 0.37
SQSTM1-204ENST00000453046 EXOC3L1Q86VI1 746 aa17.36■□□□□ 0.37
SQSTM1-204ENST00000453046 SRRM1Q8IYB3 904 aaKnown RBP17.36■□□□□ 0.37
SQSTM1-204ENST00000453046 DSELQ8IZU8 1212 aa17.36■□□□□ 0.37
SQSTM1-204ENST00000453046 C19orf47Q8N9M1 422 aaKnown RBP17.36■□□□□ 0.37
SQSTM1-204ENST00000453046 ACMSDQ8TDX5 336 aa17.36■□□□□ 0.37
SQSTM1-204ENST00000453046 ASZ1Q8WWH4 475 aa17.36■□□□□ 0.37
SQSTM1-204ENST00000453046 LPGAT1Q92604 370 aa17.36■□□□□ 0.37
SQSTM1-204ENST00000453046 ALKBH8Q96BT7 664 aaKnown RBP17.36■□□□□ 0.37
SQSTM1-204ENST00000453046 SMC6Q96SB8 1091 aa17.36■□□□□ 0.37
SQSTM1-204ENST00000453046 SSU72Q9NP77 194 aaKnown RBP17.36■□□□□ 0.37
SQSTM1-204ENST00000453046 PLAGL1Q9UM63 463 aa17.36■□□□□ 0.37
SQSTM1-204ENST00000453046 SNX7Q9UNH6 387 aa17.36■□□□□ 0.37
SQSTM1-204ENST00000453046 TP53TG5Q9Y2B4 290 aa17.36■□□□□ 0.37
SQSTM1-204ENST00000453046 ISM1B1AKI9 464 aa17.35■□□□□ 0.37
SQSTM1-204ENST00000453046 PRMT5O14744 637 aaPredicted RBP17.35■□□□□ 0.37
SQSTM1-204ENST00000453046 RPN2P04844 631 aa17.35■□□□□ 0.37
SQSTM1-204ENST00000453046 APOA4P06727 396 aa17.35■□□□□ 0.37
SQSTM1-204ENST00000453046 F7P08709 466 aaPredicted RBP17.35■□□□□ 0.37
SQSTM1-204ENST00000453046 NR1D1P20393 614 aa17.35■□□□□ 0.37
SQSTM1-204ENST00000453046 CASRP41180 1078 aa17.35■□□□□ 0.37
SQSTM1-204ENST00000453046 POU4F1Q01851 419 aa17.35■□□□□ 0.37
SQSTM1-204ENST00000453046 PTRHD1Q6GMV3 140 aaKnown RBP17.35■□□□□ 0.37
SQSTM1-204ENST00000453046 FAM45BPQ6NSW5 357 aa17.35■□□□□ 0.37
SQSTM1-204ENST00000453046 TCTN3Q6NUS6 607 aa17.35■□□□□ 0.37
SQSTM1-204ENST00000453046 CNSTQ6PJW8 725 aa17.35■□□□□ 0.37
SQSTM1-204ENST00000453046 ZNF517Q6ZMY9 492 aaPredicted RBP17.35■□□□□ 0.37
SQSTM1-204ENST00000453046 SYTL1Q8IYJ3 562 aa17.35■□□□□ 0.37
SQSTM1-204ENST00000453046 ENDOVQ8N8Q3 282 aaKnown RBP17.35■□□□□ 0.37
SQSTM1-204ENST00000453046 TEX19Q8NA77 164 aa17.35■□□□□ 0.37
SQSTM1-204ENST00000453046 CFAP61Q8NHU2 1237 aa17.35■□□□□ 0.37
SQSTM1-204ENST00000453046 FAM45AQ8TCE6 357 aa17.35■□□□□ 0.37
SQSTM1-204ENST00000453046 TCTN2Q96GX1 697 aa17.35■□□□□ 0.37
SQSTM1-204ENST00000453046 CABS1Q96KC9 395 aa17.35■□□□□ 0.37
SQSTM1-204ENST00000453046 OR2A14Q96R47 310 aa17.35■□□□□ 0.37
SQSTM1-204ENST00000453046 EPN3Q9H201 632 aa17.35■□□□□ 0.37
SQSTM1-204ENST00000453046 PCMTD2Q9NV79 361 aa17.35■□□□□ 0.37
SQSTM1-204ENST00000453046 MKS1Q9NXB0 559 aa17.35■□□□□ 0.37
SQSTM1-204ENST00000453046 SPHK1Q9NYA1 384 aa17.35■□□□□ 0.37
SQSTM1-204ENST00000453046 TLK1Q9UKI8 766 aa17.35■□□□□ 0.37
SQSTM1-204ENST00000453046 COMMD10Q9Y6G5 202 aa17.35■□□□□ 0.37
SQSTM1-204ENST00000453046 A0A0J9YY10 115 aa17.34■□□□□ 0.37
SQSTM1-204ENST00000453046 IQCF5A8MTL0 148 aa17.34■□□□□ 0.37
SQSTM1-204ENST00000453046 ZNF749O43361 778 aa17.34■□□□□ 0.37
SQSTM1-204ENST00000453046 HAUS5O94927 633 aa17.34■□□□□ 0.37
SQSTM1-204ENST00000453046 ALDOAP04075 364 aaKnown RBP17.34■□□□□ 0.37
SQSTM1-204ENST00000453046 HBQ1P09105 142 aa17.34■□□□□ 0.37
SQSTM1-204ENST00000453046 RAB40ALP0C0E4 278 aa17.34■□□□□ 0.37
SQSTM1-204ENST00000453046 SPTBP11277 2137 aa17.34■□□□□ 0.37
SQSTM1-204ENST00000453046 AGXTP21549 392 aa17.34■□□□□ 0.37
SQSTM1-204ENST00000453046 RPS3P23396 243 aaKnown RBP eCLIP17.34■□□□□ 0.376e-7■■■□□ 17.6
SQSTM1-204ENST00000453046 RORAP35398 523 aa17.34■□□□□ 0.37
SQSTM1-204ENST00000453046 KLRB1Q12918 225 aa17.34■□□□□ 0.37
SQSTM1-204ENST00000453046 IL10RAQ13651 578 aa17.34■□□□□ 0.37
SQSTM1-204ENST00000453046 ZKSCAN8Q15776 578 aaPredicted RBP17.34■□□□□ 0.37
SQSTM1-204ENST00000453046 ZNF789Q5FWF6 425 aa17.34■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 67.2 ms