RNA–Protein interactions for RNA: ENST00000450066.6

USP39-207, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,086 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-207ENST00000450066 PROKR1Q8TCW9 393 aa13.78□□□□□ -0.2
USP39-207ENST00000450066 SLC5A11Q8WWX8 675 aa13.78□□□□□ -0.2
USP39-207ENST00000450066 TSACCQ96A04 125 aaPredicted RBP13.78□□□□□ -0.2
USP39-207ENST00000450066 CLDN23Q96B33 292 aa13.78□□□□□ -0.2
USP39-207ENST00000450066 CMTM7Q96FZ5 175 aa13.78□□□□□ -0.2
USP39-207ENST00000450066 TEX37Q96LM6 180 aa13.78□□□□□ -0.2
USP39-207ENST00000450066 TPSD1Q9BZJ3 242 aa13.78□□□□□ -0.2
USP39-207ENST00000450066 TBC1D17Q9HA65 648 aa13.78□□□□□ -0.2
USP39-207ENST00000450066 WDR41Q9HAD4 459 aa13.78□□□□□ -0.2
USP39-207ENST00000450066 SLC52A3Q9NQ40 469 aa13.78□□□□□ -0.2
USP39-207ENST00000450066 WASH6PQ9NQA3 447 aa13.78□□□□□ -0.2
USP39-207ENST00000450066 PRDM8Q9NQV8 689 aa13.78□□□□□ -0.2
USP39-207ENST00000450066 SLC7A8Q9UHI5 535 aa13.78□□□□□ -0.2
USP39-207ENST00000450066 PRPF19Q9UMS4 504 aaKnown RBP13.78□□□□□ -0.2
USP39-207ENST00000450066 ZBTB32Q9Y2Y4 487 aaPredicted RBP13.78□□□□□ -0.2
USP39-207ENST00000450066 NDUFAF1Q9Y375 327 aa13.78□□□□□ -0.2
USP39-207ENST00000450066 POLR3HQ9Y535 204 aaPredicted RBP13.78□□□□□ -0.2
USP39-207ENST00000450066 FAM234BA2RU67 622 aa13.78□□□□□ -0.2
USP39-207ENST00000450066 ATP6V1G2O95670 118 aa13.78□□□□□ -0.2
USP39-207ENST00000450066 HSD3B1P14060 373 aa13.78□□□□□ -0.2
USP39-207ENST00000450066 HSD3B2P26439 372 aa13.78□□□□□ -0.2
USP39-207ENST00000450066 ZFP36L2P47974 494 aaKnown RBP13.78□□□□□ -0.2
USP39-207ENST00000450066 RPE65Q16518 533 aa13.78□□□□□ -0.2
USP39-207ENST00000450066 ALG11Q2TAA5 492 aa13.78□□□□□ -0.2
USP39-207ENST00000450066 VPS26BQ4G0F5 336 aa13.78□□□□□ -0.2
USP39-207ENST00000450066 PAGE2BQ5JRK9 111 aa13.78□□□□□ -0.2
USP39-207ENST00000450066 CATSPEREQ5SY80 951 aa13.78□□□□□ -0.2
USP39-207ENST00000450066 CACHD1Q5VU97 1274 aa13.78□□□□□ -0.2
USP39-207ENST00000450066 NXPE4Q6UWF7 544 aa13.78□□□□□ -0.2
USP39-207ENST00000450066 ABRAXAS1Q6UWZ7 409 aa13.78□□□□□ -0.2
USP39-207ENST00000450066 HACD2Q6Y1H2 254 aa13.78□□□□□ -0.2
USP39-207ENST00000450066 RD3Q7Z3Z2 195 aa13.78□□□□□ -0.2
USP39-207ENST00000450066 FRMD1Q8N878 549 aa13.78□□□□□ -0.2
USP39-207ENST00000450066 PCYOX1LQ8NBM8 494 aa13.78□□□□□ -0.2
USP39-207ENST00000450066 OR13H1Q8NG92 308 aa13.78□□□□□ -0.2
USP39-207ENST00000450066 OR7G3Q8NG95 312 aa13.78□□□□□ -0.2
USP39-207ENST00000450066 MAFAQ8NHW3 353 aaPredicted RBP13.78□□□□□ -0.2
USP39-207ENST00000450066 RLN3Q8WXF3 142 aa13.78□□□□□ -0.2
USP39-207ENST00000450066 SMPDL3AQ92484 453 aa13.78□□□□□ -0.2
USP39-207ENST00000450066 REPS1Q96D71 796 aa13.78□□□□□ -0.2
USP39-207ENST00000450066 CAMK1GQ96NX5 476 aa13.78□□□□□ -0.2
USP39-207ENST00000450066 PCBD2Q9H0N5 130 aa13.78□□□□□ -0.2
USP39-207ENST00000450066 CHRDQ9H2X0 955 aa13.78□□□□□ -0.2
USP39-207ENST00000450066 BRF2Q9HAW0 419 aa13.78□□□□□ -0.2
USP39-207ENST00000450066 SPATA6Q9NWH7 488 aaPredicted RBP13.78□□□□□ -0.2
USP39-207ENST00000450066 TRNAU1APQ9NX07 287 aaKnown RBP13.78□□□□□ -0.2
USP39-207ENST00000450066 PCOLCE2Q9UKZ9 415 aa13.78□□□□□ -0.2
USP39-207ENST00000450066 PNMA8BQ9ULN7 279 aaPredicted RBP13.78□□□□□ -0.2
USP39-207ENST00000450066 SH2B3Q9UQQ2 575 aa13.78□□□□□ -0.2
USP39-207ENST00000450066 TMED5Q9Y3A6 229 aa13.78□□□□□ -0.2
USP39-207ENST00000450066 HEBP2Q9Y5Z4 205 aa13.78□□□□□ -0.2
USP39-207ENST00000450066 DGKBQ9Y6T7 804 aa13.78□□□□□ -0.2
USP39-207ENST00000450066 A0A1W2PPC4 97 aa13.77□□□□□ -0.21
USP39-207ENST00000450066 OR52A4PA6NMU1 304 aa13.77□□□□□ -0.21
USP39-207ENST00000450066 MRASO14807 208 aa13.77□□□□□ -0.21
USP39-207ENST00000450066 ANKRD28O15084 1053 aa13.77□□□□□ -0.21
USP39-207ENST00000450066 ANGPT2O15123 496 aa13.77□□□□□ -0.21
USP39-207ENST00000450066 SCAMP1O15126 338 aa13.77□□□□□ -0.21
USP39-207ENST00000450066 PCSK2P16519 638 aa13.77□□□□□ -0.21
USP39-207ENST00000450066 CAPN3P20807 821 aa13.77□□□□□ -0.21
USP39-207ENST00000450066 JAK1P23458 1154 aa13.77□□□□□ -0.21
USP39-207ENST00000450066 POLR2JP52435 117 aaKnown RBP13.77□□□□□ -0.21
USP39-207ENST00000450066 KCNK10P57789 538 aa13.77□□□□□ -0.21
USP39-207ENST00000450066 LAPTM5Q13571 262 aa13.77□□□□□ -0.21
USP39-207ENST00000450066 KRT33BQ14525 404 aa13.77□□□□□ -0.21
USP39-207ENST00000450066 MED27Q6P2C8 311 aa13.77□□□□□ -0.21
USP39-207ENST00000450066 LPCAT2Q7L5N7 544 aa13.77□□□□□ -0.21
USP39-207ENST00000450066 NET1Q7Z628 596 aaPredicted RBP13.77□□□□□ -0.21
USP39-207ENST00000450066 FBXW8Q8N3Y1 598 aa13.77□□□□□ -0.21
USP39-207ENST00000450066 FAM160A2Q8N612 972 aaPredicted RBP13.77□□□□□ -0.21
USP39-207ENST00000450066 PJA1Q8NG27 643 aa13.77□□□□□ -0.21
USP39-207ENST00000450066 ROPN1LQ96C74 230 aa13.77□□□□□ -0.21
USP39-207ENST00000450066 SPDL1Q96EA4 605 aa13.77□□□□□ -0.21
USP39-207ENST00000450066 RAB11FIP5Q9BXF6 653 aa13.77□□□□□ -0.21
USP39-207ENST00000450066 ACTL8Q9H568 366 aa13.77□□□□□ -0.21
USP39-207ENST00000450066 GEMIN8Q9NWZ8 242 aaKnown RBP13.77□□□□□ -0.21
USP39-207ENST00000450066 TBC1D29Q9UFV1 150 aa13.77□□□□□ -0.21
USP39-207ENST00000450066 A0A1W2PP18 115 aa13.76□□□□□ -0.21
USP39-207ENST00000450066 DYTNA2CJ06 578 aa13.76□□□□□ -0.21
USP39-207ENST00000450066 CIB2O75838 187 aa13.76□□□□□ -0.21
USP39-207ENST00000450066 MTHFD1P11586 935 aaKnown RBP13.76□□□□□ -0.21
USP39-207ENST00000450066 ACPPP15309 386 aa13.76□□□□□ -0.21
USP39-207ENST00000450066 RPS9P46781 194 aaKnown RBP13.76□□□□□ -0.21
USP39-207ENST00000450066 RAB28P51157 221 aa13.76□□□□□ -0.21
USP39-207ENST00000450066 MTTPP55157 894 aa13.76□□□□□ -0.21
USP39-207ENST00000450066 HIST2H2ACQ16777 129 aaPredicted RBP13.76□□□□□ -0.21
USP39-207ENST00000450066 HIST2H2AA3Q6FI13 130 aa13.76□□□□□ -0.21
USP39-207ENST00000450066 BNC2Q6ZN30 1099 aaPredicted RBP13.76□□□□□ -0.21
USP39-207ENST00000450066 LAS2Q8IYD9 372 aa13.76□□□□□ -0.21
USP39-207ENST00000450066 SLC22A18ASQ8N1D0 253 aa13.76□□□□□ -0.21
USP39-207ENST00000450066 C2orf73Q8N5S3 287 aaPredicted RBP13.76□□□□□ -0.21
USP39-207ENST00000450066 FAM174AQ8TBP5 190 aa13.76□□□□□ -0.21
USP39-207ENST00000450066 METTL2AQ96IZ6 378 aaKnown RBP13.76□□□□□ -0.21
USP39-207ENST00000450066 MTERF1Q99551 399 aaKnown RBP13.76□□□□□ -0.21
USP39-207ENST00000450066 ORAI3Q9BRQ5 295 aa13.76□□□□□ -0.21
USP39-207ENST00000450066 TMEM168Q9H0V1 697 aa13.76□□□□□ -0.21
USP39-207ENST00000450066 GPR27Q9NS67 375 aa13.76□□□□□ -0.21
USP39-207ENST00000450066 SCHIP1Q9P0W5 487 aaPredicted RBP13.76□□□□□ -0.21
USP39-207ENST00000450066 VPS29Q9UBQ0 182 aa13.76□□□□□ -0.21
USP39-207ENST00000450066 BAIAP2L1Q9UHR4 511 aa13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms