RNA–Protein interactions for RNA: ENST00000430118.1

HMGB3-203, Transcript of high mobility group box 3, humanhuman

TSL 1 (best)

Gene HMGB3, Length 529 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-203ENST00000430118 CDO1Q16878 200 aa3.96□□□□□ -1.78
HMGB3-203ENST00000430118 ZXDCQ2QGD7 858 aaPredicted RBP3.96□□□□□ -1.78
HMGB3-203ENST00000430118 FUT11Q495W5 492 aa3.96□□□□□ -1.78
HMGB3-203ENST00000430118 NHSL2Q5HYW2 709 aa3.96□□□□□ -1.78
HMGB3-203ENST00000430118 SPOUT1Q5T280 376 aaKnown RBP3.96□□□□□ -1.78
HMGB3-203ENST00000430118 NSUN5P2Q63ZY6 315 aa3.96□□□□□ -1.78
HMGB3-203ENST00000430118 TEX38Q6PEX7 206 aa3.96□□□□□ -1.78
HMGB3-203ENST00000430118 PPP1R21Q6ZMI0 780 aa3.96□□□□□ -1.78
HMGB3-203ENST00000430118 ZNF66Q6ZN08 573 aa3.96□□□□□ -1.78
HMGB3-203ENST00000430118 SLC16A12Q6ZSM3 486 aa3.96□□□□□ -1.78
HMGB3-203ENST00000430118 TMEM173Q86WV6 379 aaPredicted RBP3.96□□□□□ -1.78
HMGB3-203ENST00000430118 NRROSQ86YC3 692 aa3.96□□□□□ -1.78
HMGB3-203ENST00000430118 TMEM174Q8WUU8 243 aa3.96□□□□□ -1.78
HMGB3-203ENST00000430118 SEPT8Q92599 483 aa3.96□□□□□ -1.78
HMGB3-203ENST00000430118 SLAMF9Q96A28 289 aa3.96□□□□□ -1.78
HMGB3-203ENST00000430118 EXOC4Q96A65 974 aa3.96□□□□□ -1.78
HMGB3-203ENST00000430118 RPGRIP1Q96KN7 1286 aa3.96□□□□□ -1.78
HMGB3-203ENST00000430118 CDCA3Q99618 268 aaPredicted RBP3.96□□□□□ -1.78
HMGB3-203ENST00000430118 RTP3Q9BQQ7 232 aa3.96□□□□□ -1.78
HMGB3-203ENST00000430118 CRACR2AQ9BSW2 395 aa3.96□□□□□ -1.78
HMGB3-203ENST00000430118 INPP5KQ9BT40 448 aa3.96□□□□□ -1.78
HMGB3-203ENST00000430118 PI4K2AQ9BTU6 479 aa3.96□□□□□ -1.78
HMGB3-203ENST00000430118 TRIM7Q9C029 511 aa3.96□□□□□ -1.78
HMGB3-203ENST00000430118 KCNN2Q9H2S1 579 aa3.96□□□□□ -1.78
HMGB3-203ENST00000430118 GOLPH3LQ9H4A5 285 aa3.96□□□□□ -1.78
HMGB3-203ENST00000430118 MRPL44Q9H9J2 332 aaKnown RBP3.96□□□□□ -1.78
HMGB3-203ENST00000430118 HOMER3Q9NSC5 361 aa3.96□□□□□ -1.78
HMGB3-203ENST00000430118 ABCB8Q9NUT2 735 aa3.96□□□□□ -1.78
HMGB3-203ENST00000430118 ERAP1Q9NZ08 941 aa3.96□□□□□ -1.78
HMGB3-203ENST00000430118 PA2G4Q9UQ80 394 aaKnown RBP3.96□□□□□ -1.78
HMGB3-203ENST00000430118 GRIP1Q9Y3R0 1128 aa3.96□□□□□ -1.78
HMGB3-203ENST00000430118 PLXNA3P51805 1871 aa3.96□□□□□ -1.78
HMGB3-203ENST00000430118 RALGAPA2Q2PPJ7 1873 aa3.96□□□□□ -1.78
HMGB3-203ENST00000430118 ASTN1O14525 1302 aa3.95□□□□□ -1.78
HMGB3-203ENST00000430118 GRIN2DO15399 1336 aa3.95□□□□□ -1.78
HMGB3-203ENST00000430118 ADGRA3Q8IWK6 1321 aa3.95□□□□□ -1.78
HMGB3-203ENST00000430118 PARP14Q460N5 1801 aa3.95□□□□□ -1.78
HMGB3-203ENST00000430118 MYH8P13535 1937 aa3.95□□□□□ -1.78
HMGB3-203ENST00000430118 LRRD1A4D1F6 860 aa3.95□□□□□ -1.78
HMGB3-203ENST00000430118 CGB1A6NKQ9 187 aa3.95□□□□□ -1.78
HMGB3-203ENST00000430118 C5orf67F2Z3F1 127 aa3.95□□□□□ -1.78
HMGB3-203ENST00000430118 PTGESO14684 152 aa3.95□□□□□ -1.78
HMGB3-203ENST00000430118 ZNF263O14978 683 aa3.95□□□□□ -1.78
HMGB3-203ENST00000430118 LDB2O43679 373 aa3.95□□□□□ -1.78
HMGB3-203ENST00000430118 SSX4O60224 188 aa3.95□□□□□ -1.78
HMGB3-203ENST00000430118 KIF5CO60282 957 aa3.95□□□□□ -1.78
HMGB3-203ENST00000430118 MED24O75448 989 aa3.95□□□□□ -1.78
HMGB3-203ENST00000430118 VNN2O95498 520 aa3.95□□□□□ -1.78
HMGB3-203ENST00000430118 PNPP00491 289 aa3.95□□□□□ -1.78
HMGB3-203ENST00000430118 GBAP04062 536 aa3.95□□□□□ -1.78
HMGB3-203ENST00000430118 CHRNB1P11230 501 aa3.95□□□□□ -1.78
HMGB3-203ENST00000430118 EEF2P13639 858 aaKnown RBP3.95□□□□□ -1.78
HMGB3-203ENST00000430118 ARSBP15848 533 aa3.95□□□□□ -1.78
HMGB3-203ENST00000430118 STX2P32856 288 aa3.95□□□□□ -1.78
HMGB3-203ENST00000430118 ATP6V1E1P36543 226 aa3.95□□□□□ -1.78
HMGB3-203ENST00000430118 APOBEC1P41238 236 aaKnown RBP3.95□□□□□ -1.78
HMGB3-203ENST00000430118 CLK1P49759 484 aaKnown RBP3.95□□□□□ -1.78
HMGB3-203ENST00000430118 PLCD1P51178 756 aa3.95□□□□□ -1.78
HMGB3-203ENST00000430118 CTSCP53634 463 aa3.95□□□□□ -1.78
HMGB3-203ENST00000430118 TMPRSS3P57727 454 aa3.95□□□□□ -1.78
HMGB3-203ENST00000430118 PROK1P58294 105 aa3.95□□□□□ -1.78
HMGB3-203ENST00000430118 STX1BP61266 288 aa3.95□□□□□ -1.78
HMGB3-203ENST00000430118 SNRPEP62304 92 aaKnown RBP3.95□□□□□ -1.78
HMGB3-203ENST00000430118 DYNLL1P63167 89 aaKnown RBP3.95□□□□□ -1.78
HMGB3-203ENST00000430118 ACSM1Q08AH1 577 aa3.95□□□□□ -1.78
HMGB3-203ENST00000430118 HYAL1Q12794 435 aa3.95□□□□□ -1.78
HMGB3-203ENST00000430118 PPP2R5CQ13362 524 aa3.95□□□□□ -1.78
HMGB3-203ENST00000430118 UGCGQ16739 394 aa3.95□□□□□ -1.78
HMGB3-203ENST00000430118 TMEM119Q4V9L6 283 aa3.95□□□□□ -1.78
HMGB3-203ENST00000430118 C6orf163Q5TEZ5 329 aa3.95□□□□□ -1.78
HMGB3-203ENST00000430118 SHEQ5VZ18 495 aa3.95□□□□□ -1.78
HMGB3-203ENST00000430118 SHQ1Q6PI26 577 aaKnown RBP3.95□□□□□ -1.78
HMGB3-203ENST00000430118 PCSK4Q6UW60 755 aa3.95□□□□□ -1.78
HMGB3-203ENST00000430118 ZNF782Q6ZMW2 699 aaPredicted RBP3.95□□□□□ -1.78
HMGB3-203ENST00000430118 ZNF788Q6ZQV5 615 aa3.95□□□□□ -1.78
HMGB3-203ENST00000430118 C15orf39Q6ZRI6 1047 aa3.95□□□□□ -1.78
HMGB3-203ENST00000430118 ZNF534Q76KX8 674 aa3.95□□□□□ -1.78
HMGB3-203ENST00000430118 GET4Q7L5D6 327 aaPredicted RBP3.95□□□□□ -1.78
HMGB3-203ENST00000430118 IQCF2Q8IXL9 164 aa3.95□□□□□ -1.78
HMGB3-203ENST00000430118 C4orf19Q8IY42 314 aa3.95□□□□□ -1.78
HMGB3-203ENST00000430118 PM20D2Q8IYS1 436 aa3.95□□□□□ -1.78
HMGB3-203ENST00000430118 BEST3Q8N1M1 668 aa3.95□□□□□ -1.78
HMGB3-203ENST00000430118 FBXO39Q8N4B4 442 aa3.95□□□□□ -1.78
HMGB3-203ENST00000430118 EMC1Q8N766 993 aa3.95□□□□□ -1.78
HMGB3-203ENST00000430118 ARL10Q8N8L6 244 aa3.95□□□□□ -1.78
HMGB3-203ENST00000430118 FAM133AQ8N9E0 248 aa3.95□□□□□ -1.78
HMGB3-203ENST00000430118 WFIKKN2Q8TEU8 576 aa3.95□□□□□ -1.78
HMGB3-203ENST00000430118 SPSB1Q96BD6 273 aa3.95□□□□□ -1.78
HMGB3-203ENST00000430118 ERLEC1Q96DZ1 483 aa3.95□□□□□ -1.78
HMGB3-203ENST00000430118 NECTIN4Q96NY8 510 aa3.95□□□□□ -1.78
HMGB3-203ENST00000430118 GFI1Q99684 422 aa3.95□□□□□ -1.78
HMGB3-203ENST00000430118 UBXN6Q9BZV1 441 aa3.95□□□□□ -1.78
HMGB3-203ENST00000430118 SLC38A10Q9HBR0 1119 aa3.95□□□□□ -1.78
HMGB3-203ENST00000430118 RAVER2Q9HCJ3 691 aaKnown RBP3.95□□□□□ -1.78
HMGB3-203ENST00000430118 KRCC1Q9NPI7 259 aaPredicted RBP3.95□□□□□ -1.78
HMGB3-203ENST00000430118 CNGB3Q9NQW8 809 aa3.95□□□□□ -1.78
HMGB3-203ENST00000430118 PDGFCQ9NRA1 345 aa3.95□□□□□ -1.78
HMGB3-203ENST00000430118 DPP3Q9NY33 737 aa3.95□□□□□ -1.78
HMGB3-203ENST00000430118 RCC2Q9P258 522 aaKnown RBP3.95□□□□□ -1.78
HMGB3-203ENST00000430118 SLC9A2Q9UBY0 812 aa3.95□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms