RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 KCNA7Q96RP8 456 aa8.14□□□□□ -1.11
USP54-203ENST00000418501 SPATA9Q9BWV2 254 aa8.14□□□□□ -1.11
USP54-203ENST00000418501 KLHL4Q9C0H6 718 aa8.14□□□□□ -1.11
USP54-203ENST00000418501 VPS4AQ9UN37 437 aa8.14□□□□□ -1.11
USP54-203ENST00000418501 POMPQ9Y244 141 aa8.14□□□□□ -1.11
USP54-203ENST00000418501 ORC6Q9Y5N6 252 aa8.14□□□□□ -1.11
USP54-203ENST00000418501 LRRC14BA6NHZ5 514 aa8.13□□□□□ -1.11
USP54-203ENST00000418501 GPR39O43194 453 aa8.13□□□□□ -1.11
USP54-203ENST00000418501 SEMA3DO95025 777 aa8.13□□□□□ -1.11
USP54-203ENST00000418501 BMP10O95393 424 aa8.13□□□□□ -1.11
USP54-203ENST00000418501 VIPP01282 170 aa8.13□□□□□ -1.11
USP54-203ENST00000418501 FOSL2P15408 326 aa8.13□□□□□ -1.11
USP54-203ENST00000418501 SOX9P48436 509 aa8.13□□□□□ -1.11
USP54-203ENST00000418501 SLC7A2P52569 658 aa8.13□□□□□ -1.11
USP54-203ENST00000418501 ADPRHP54922 357 aa8.13□□□□□ -1.11
USP54-203ENST00000418501 STXBP1P61764 594 aaKnown RBP8.13□□□□□ -1.11
USP54-203ENST00000418501 TBPL1P62380 186 aa8.13□□□□□ -1.11
USP54-203ENST00000418501 GRAMD1BQ3KR37 738 aa8.13□□□□□ -1.11
USP54-203ENST00000418501 VPS26BQ4G0F5 336 aa8.13□□□□□ -1.11
USP54-203ENST00000418501 TIGD2Q4W5G0 525 aa8.13□□□□□ -1.11
USP54-203ENST00000418501 METRNLQ641Q3 311 aa8.13□□□□□ -1.11
USP54-203ENST00000418501 KIAA0895LQ68EN5 471 aa8.13□□□□□ -1.11
USP54-203ENST00000418501 LRRC74BQ6ZQY2 392 aa8.13□□□□□ -1.11
USP54-203ENST00000418501 HIPK4Q8NE63 616 aa8.13□□□□□ -1.11
USP54-203ENST00000418501 LCN9Q8WX39 176 aa8.13□□□□□ -1.11
USP54-203ENST00000418501 LRRC58Q96CX6 371 aa8.13□□□□□ -1.11
USP54-203ENST00000418501 APOLD1Q96LR9 279 aa8.13□□□□□ -1.11
USP54-203ENST00000418501 CDK15Q96Q40 435 aa8.13□□□□□ -1.11
USP54-203ENST00000418501 IL1RL2Q9HB29 575 aa8.13□□□□□ -1.11
USP54-203ENST00000418501 PSME2Q9UL46 239 aa8.13□□□□□ -1.11
USP54-203ENST00000418501 TSC22D4Q9Y3Q8 395 aa8.13□□□□□ -1.11
USP54-203ENST00000418501 AP1M2Q9Y6Q5 423 aa8.13□□□□□ -1.11
USP54-203ENST00000418501 C2CD4DB7Z1M9 353 aa8.13□□□□□ -1.11
USP54-203ENST00000418501 H3BQ06 376 aaPredicted RBP8.13□□□□□ -1.11
USP54-203ENST00000418501 NRG2O14511 850 aaPredicted RBP8.13□□□□□ -1.11
USP54-203ENST00000418501 PDE5AO76074 875 aa8.13□□□□□ -1.11
USP54-203ENST00000418501 SCELO95171 688 aa8.13□□□□□ -1.11
USP54-203ENST00000418501 ANXA4P09525 319 aaPredicted RBP8.13□□□□□ -1.11
USP54-203ENST00000418501 TRIM23P36406 574 aa8.13□□□□□ -1.11
USP54-203ENST00000418501 CHRNB3Q05901 458 aa8.13□□□□□ -1.11
USP54-203ENST00000418501 DOC2AQ14183 400 aa8.13□□□□□ -1.11
USP54-203ENST00000418501 ABRAXAS2Q15018 415 aa8.13□□□□□ -1.11
USP54-203ENST00000418501 TEAD4Q15561 434 aa8.13□□□□□ -1.11
USP54-203ENST00000418501 UAP1L1Q3KQV9 507 aa8.13□□□□□ -1.11
USP54-203ENST00000418501 FAM98BQ52LJ0 330 aaKnown RBP8.13□□□□□ -1.11
USP54-203ENST00000418501 TMEM35AQ53FP2 167 aa8.13□□□□□ -1.11
USP54-203ENST00000418501 NIPAL1Q6NVV3 410 aa8.13□□□□□ -1.11
USP54-203ENST00000418501 BHLHB9Q6PI77 547 aa8.13□□□□□ -1.11
USP54-203ENST00000418501 TMIGD1Q6UXZ0 262 aa8.13□□□□□ -1.11
USP54-203ENST00000418501 DPP10Q8N608 796 aa8.13□□□□□ -1.11
USP54-203ENST00000418501 TRPV3Q8NET8 790 aa8.13□□□□□ -1.11
USP54-203ENST00000418501 MYLIPQ8WY64 445 aa8.13□□□□□ -1.11
USP54-203ENST00000418501 FAM162AQ96A26 154 aa8.13□□□□□ -1.11
USP54-203ENST00000418501 MTFMTQ96DP5 389 aaKnown RBP8.13□□□□□ -1.11
USP54-203ENST00000418501 ZNF385DQ9H6B1 395 aa8.13□□□□□ -1.11
USP54-203ENST00000418501 AASDHPPTQ9NRN7 309 aa8.13□□□□□ -1.11
USP54-203ENST00000418501 NPIPB8E9PQR5 432 aa8.13□□□□□ -1.11
USP54-203ENST00000418501 K7EQS6 105 aa8.13□□□□□ -1.11
USP54-203ENST00000418501 BCAS2O75934 225 aaPredicted RBP8.13□□□□□ -1.11
USP54-203ENST00000418501 ANPEPP15144 967 aa8.13□□□□□ -1.11
USP54-203ENST00000418501 RCAN2Q14206 197 aa8.13□□□□□ -1.11
USP54-203ENST00000418501 INTS11Q5TA45 600 aaKnown RBP8.13□□□□□ -1.11
USP54-203ENST00000418501 TRIM74Q86UV6 250 aa8.13□□□□□ -1.11
USP54-203ENST00000418501 PNPLA1Q8N8W4 532 aa8.13□□□□□ -1.11
USP54-203ENST00000418501 MIEF2Q96C03 454 aa8.13□□□□□ -1.11
USP54-203ENST00000418501 THAP11Q96EK4 314 aa8.13□□□□□ -1.11
USP54-203ENST00000418501 MRPS30Q9NP92 439 aaKnown RBP8.13□□□□□ -1.11
USP54-203ENST00000418501 TMEM184CQ9NVA4 438 aa8.13□□□□□ -1.11
USP54-203ENST00000418501 EVA1BQ9NVM1 165 aa8.13□□□□□ -1.11
USP54-203ENST00000418501 TRNAU1APQ9NX07 287 aaKnown RBP8.13□□□□□ -1.11
USP54-203ENST00000418501 PPT2Q9UMR5 302 aa8.13□□□□□ -1.11
USP54-203ENST00000418501 RFXANKO14593 260 aa8.13□□□□□ -1.11
USP54-203ENST00000418501 GNGT2O14610 69 aa8.13□□□□□ -1.11
USP54-203ENST00000418501 PDYNP01213 254 aa8.13□□□□□ -1.11
USP54-203ENST00000418501 FASP25445 335 aa8.13□□□□□ -1.11
USP54-203ENST00000418501 ARRB2P32121 409 aa8.13□□□□□ -1.11
USP54-203ENST00000418501 HNRNPFP52597 415 aaKnown RBP8.13□□□□□ -1.11
USP54-203ENST00000418501 TXNL4AP83876 142 aaKnown RBP8.13□□□□□ -1.11
USP54-203ENST00000418501 NFE2L1Q14494 772 aa8.13□□□□□ -1.11
USP54-203ENST00000418501 UBXN2BQ14CS0 331 aa8.13□□□□□ -1.11
USP54-203ENST00000418501 HEPACAMQ14CZ8 416 aa8.13□□□□□ -1.11
USP54-203ENST00000418501 FBXO48Q5FWF7 155 aa8.13□□□□□ -1.11
USP54-203ENST00000418501 ZNF648Q5T619 568 aaPredicted RBP8.13□□□□□ -1.11
USP54-203ENST00000418501 CES4AQ5XG92 561 aa8.13□□□□□ -1.11
USP54-203ENST00000418501 RPS27LQ71UM5 84 aaKnown RBP8.13□□□□□ -1.11
USP54-203ENST00000418501 SLC9B2Q86UD5 537 aa8.13□□□□□ -1.11
USP54-203ENST00000418501 APLFQ8IW19 511 aaPredicted RBP8.13□□□□□ -1.11
USP54-203ENST00000418501 SFRP1Q8N474 314 aa8.13□□□□□ -1.11
USP54-203ENST00000418501 BHLHE22Q8NFJ8 381 aaPredicted RBP8.13□□□□□ -1.11
USP54-203ENST00000418501 RNF217Q8TC41 542 aa8.13□□□□□ -1.11
USP54-203ENST00000418501 LRCH3Q96II8 777 aa8.13□□□□□ -1.11
USP54-203ENST00000418501 RNF145Q96MT1 663 aa8.13□□□□□ -1.11
USP54-203ENST00000418501 LDHAL6BQ9BYZ2 381 aaPredicted RBP8.13□□□□□ -1.11
USP54-203ENST00000418501 KCNH6Q9H252 994 aa8.13□□□□□ -1.11
USP54-203ENST00000418501 INVSQ9Y283 1065 aa8.13□□□□□ -1.11
USP54-203ENST00000418501 SLC17A4Q9Y2C5 497 aa8.13□□□□□ -1.11
USP54-203ENST00000418501 AP4S1Q9Y587 144 aa8.13□□□□□ -1.11
USP54-203ENST00000418501 ENTPD2Q9Y5L3 495 aa8.13□□□□□ -1.11
USP54-203ENST00000418501 FAM221BA6H8Z2 402 aa8.12□□□□□ -1.11
USP54-203ENST00000418501 LSM1O15116 133 aaKnown RBP8.12□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms