RNA–Protein interactions for RNA: ENST00000413872.6

PHRF1-202, Transcript of PHD and ring finger domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PHRF1, Length 5,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHRF1-202ENST00000413872 TCEAL8Q8IYN2 117 aa16.84■□□□□ 0.29
PHRF1-202ENST00000413872 CDK15Q96Q40 435 aa16.84■□□□□ 0.29
PHRF1-202ENST00000413872 MKL2Q9ULH7 1088 aa16.84■□□□□ 0.29
PHRF1-202ENST00000413872 TMEM98Q9Y2Y6 226 aa16.84■□□□□ 0.29
PHRF1-202ENST00000413872 RBM7Q9Y580 266 aaKnown RBP16.84■□□□□ 0.29
PHRF1-202ENST00000413872 KCTD3Q9Y597 815 aa16.84■□□□□ 0.29
PHRF1-202ENST00000413872 ELOA3DA6NLF2 546 aaPredicted RBP16.83■□□□□ 0.29
PHRF1-202ENST00000413872 MPC1LP0DKB6 136 aa16.83■□□□□ 0.29
PHRF1-202ENST00000413872 RPL10P27635 214 aaKnown RBP16.83■□□□□ 0.29
PHRF1-202ENST00000413872 MNDAP41218 407 aa16.83■□□□□ 0.29
PHRF1-202ENST00000413872 WDR4P57081 412 aaKnown RBP16.83■□□□□ 0.29
PHRF1-202ENST00000413872 GPX6P59796 221 aa16.83■□□□□ 0.29
PHRF1-202ENST00000413872 RUNX3Q13761 415 aa16.83■□□□□ 0.29
PHRF1-202ENST00000413872 ELOA3BQ3SY89 546 aa16.83■□□□□ 0.29
PHRF1-202ENST00000413872 ELOA3Q8NG57 546 aa16.83■□□□□ 0.29
PHRF1-202ENST00000413872 OR4F6Q8NGB9 312 aa16.83■□□□□ 0.29
PHRF1-202ENST00000413872 RASSF1Q9NS23 344 aa16.83■□□□□ 0.29
PHRF1-202ENST00000413872 LYARQ9NX58 379 aaKnown RBP16.83■□□□□ 0.29
PHRF1-202ENST00000413872 SLC17A6Q9P2U8 582 aa16.83■□□□□ 0.29
PHRF1-202ENST00000413872 DMTF1Q9Y222 760 aa16.83■□□□□ 0.29
PHRF1-202ENST00000413872 CLIC1O00299 241 aa16.83■□□□□ 0.29
PHRF1-202ENST00000413872 SNPHO15079 494 aa16.83■□□□□ 0.29
PHRF1-202ENST00000413872 KLK1P06870 262 aa16.83■□□□□ 0.29
PHRF1-202ENST00000413872 TGFBR2P37173 567 aa16.83■□□□□ 0.29
PHRF1-202ENST00000413872 CLDN10P78369 228 aa16.83■□□□□ 0.29
PHRF1-202ENST00000413872 PCDH1Q08174 1060 aa16.83■□□□□ 0.29
PHRF1-202ENST00000413872 TBC1D25Q3MII6 688 aa16.83■□□□□ 0.29
PHRF1-202ENST00000413872 SLC25A24Q6NUK1 477 aa16.83■□□□□ 0.29
PHRF1-202ENST00000413872 OR5K1Q8NHB7 308 aa16.83■□□□□ 0.29
PHRF1-202ENST00000413872 CD244Q9BZW8 370 aa16.83■□□□□ 0.29
PHRF1-202ENST00000413872 PCDHGB7Q9Y5F8 929 aa16.83■□□□□ 0.29
PHRF1-202ENST00000413872 CCDC88AQ3V6T2 1871 aa16.83■□□□□ 0.29
PHRF1-202ENST00000413872 FAM92AA1XBS5 289 aa16.83■□□□□ 0.28
PHRF1-202ENST00000413872 LOC730098B7Z3J9 87 aa16.83■□□□□ 0.28
PHRF1-202ENST00000413872 H0YC42 278 aa16.83■□□□□ 0.28
PHRF1-202ENST00000413872 TAF4O00268 1085 aa16.83■□□□□ 0.28
PHRF1-202ENST00000413872 NR2C1P13056 603 aa16.83■□□□□ 0.28
PHRF1-202ENST00000413872 CST5P28325 142 aaPredicted RBP16.83■□□□□ 0.28
PHRF1-202ENST00000413872 SLC9B1Q4ZJI4 515 aa16.83■□□□□ 0.28
PHRF1-202ENST00000413872 LRRC15Q8TF66 581 aa16.83■□□□□ 0.28
PHRF1-202ENST00000413872 COX4I2Q96KJ9 171 aa16.83■□□□□ 0.28
PHRF1-202ENST00000413872 PLEKHG4BQ96PX9 1271 aa16.83■□□□□ 0.28
PHRF1-202ENST00000413872 GPER1Q99527 375 aa16.83■□□□□ 0.28
PHRF1-202ENST00000413872 GINS4Q9BRT9 223 aa16.83■□□□□ 0.28
PHRF1-202ENST00000413872 COMMD3-BMI1R4GMX3 469 aa16.83■□□□□ 0.28
PHRF1-202ENST00000413872 A0A0G2JN53 185 aa16.83■□□□□ 0.28
PHRF1-202ENST00000413872 AKAP8O43823 692 aaKnown RBP16.83■□□□□ 0.28
PHRF1-202ENST00000413872 MTPNP58546 118 aa16.83■□□□□ 0.28
PHRF1-202ENST00000413872 OC90Q02509 493 aaPredicted RBP16.83■□□□□ 0.28
PHRF1-202ENST00000413872 GPR107Q5VW38 600 aa16.83■□□□□ 0.28
PHRF1-202ENST00000413872 SLC30A6Q6NXT4 461 aa16.83■□□□□ 0.28
PHRF1-202ENST00000413872 ARMCX6Q7L4S7 300 aa16.83■□□□□ 0.28
PHRF1-202ENST00000413872 PIM3Q86V86 326 aa16.83■□□□□ 0.28
PHRF1-202ENST00000413872 CBR4Q8N4T8 237 aa16.83■□□□□ 0.28
PHRF1-202ENST00000413872 BCL2L14Q9BZR8 327 aa16.83■□□□□ 0.28
PHRF1-202ENST00000413872 FANCFQ9NPI8 374 aa16.83■□□□□ 0.28
PHRF1-202ENST00000413872 FAM221BA6H8Z2 402 aa16.83■□□□□ 0.28
PHRF1-202ENST00000413872 LSM3P62310 102 aaKnown RBP16.83■□□□□ 0.28
PHRF1-202ENST00000413872 MYBPC3Q14896 1274 aa16.83■□□□□ 0.28
PHRF1-202ENST00000413872 TGFBIQ15582 683 aa16.83■□□□□ 0.28
PHRF1-202ENST00000413872 DUOXA1Q1HG43 343 aa16.83■□□□□ 0.28
PHRF1-202ENST00000413872 PYDC2Q56P42 97 aa16.83■□□□□ 0.28
PHRF1-202ENST00000413872 LPCAT4Q643R3 524 aa16.83■□□□□ 0.28
PHRF1-202ENST00000413872 CHCHD4Q8N4Q1 142 aa16.83■□□□□ 0.28
PHRF1-202ENST00000413872 ZDHHC12Q96GR4 267 aa16.83■□□□□ 0.28
PHRF1-202ENST00000413872 DIABLOQ9NR28 239 aa16.83■□□□□ 0.28
PHRF1-202ENST00000413872 COMMD9Q9P000 198 aa16.83■□□□□ 0.28
PHRF1-202ENST00000413872 UTS2RQ9UKP6 389 aa16.83■□□□□ 0.28
PHRF1-202ENST00000413872 CAPN8A6NHC0 703 aa16.82■□□□□ 0.28
PHRF1-202ENST00000413872 H3BNX3 289 aa16.82■□□□□ 0.28
PHRF1-202ENST00000413872 ABLIM1O14639 778 aa16.82■□□□□ 0.28
PHRF1-202ENST00000413872 SLC30A4O14863 429 aa16.82■□□□□ 0.28
PHRF1-202ENST00000413872 BEST1O76090 585 aa16.82■□□□□ 0.28
PHRF1-202ENST00000413872 SLC7A1P30825 629 aa16.82■□□□□ 0.28
PHRF1-202ENST00000413872 DNAJB13P59910 316 aa16.82■□□□□ 0.28
PHRF1-202ENST00000413872 C12orf76Q8N812 135 aaPredicted RBP16.82■□□□□ 0.28
PHRF1-202ENST00000413872 PLA2G15Q8NCC3 412 aa16.82■□□□□ 0.28
PHRF1-202ENST00000413872 IGSF8Q969P0 613 aa16.82■□□□□ 0.28
PHRF1-202ENST00000413872 FIZ1Q96SL8 496 aa16.82■□□□□ 0.28
PHRF1-202ENST00000413872 EPYCQ99645 322 aa16.82■□□□□ 0.28
PHRF1-202ENST00000413872 FARSBQ9NSD9 589 aaKnown RBP16.82■□□□□ 0.28
PHRF1-202ENST00000413872 TCRBV21S2A2A0A5A6 115 aa16.82■□□□□ 0.28
PHRF1-202ENST00000413872 C2orf74A8MZ97 194 aa16.82■□□□□ 0.28
PHRF1-202ENST00000413872 TGM5O43548 720 aa16.82■□□□□ 0.28
PHRF1-202ENST00000413872 RENP00797 406 aa16.82■□□□□ 0.28
PHRF1-202ENST00000413872 HMGN1P05114 100 aa16.82■□□□□ 0.28
PHRF1-202ENST00000413872 CREB1P16220 341 aa16.82■□□□□ 0.28
PHRF1-202ENST00000413872 DDX59Q5T1V6 619 aaKnown RBP eCLIP16.82■□□□□ 0.282e-6■■■■□ 22.9
PHRF1-202ENST00000413872 PHOSPHO2Q8TCD6 241 aa16.82■□□□□ 0.28
PHRF1-202ENST00000413872 SETD7Q8WTS6 366 aaKnown RBP16.82■□□□□ 0.28
PHRF1-202ENST00000413872 TMEM40Q8WWA1 233 aa16.82■□□□□ 0.28
PHRF1-202ENST00000413872 RNF31Q96EP0 1072 aa16.82■□□□□ 0.28
PHRF1-202ENST00000413872 CGREF1Q99674 301 aa16.82■□□□□ 0.28
PHRF1-202ENST00000413872 PLGRKTQ9HBL7 147 aa16.82■□□□□ 0.28
PHRF1-202ENST00000413872 CFAP20Q9Y6A4 193 aaKnown RBP16.82■□□□□ 0.28
PHRF1-202ENST00000413872 TMEM189-UBE2V1I3L0A0 370 aa16.82■□□□□ 0.28
PHRF1-202ENST00000413872 hCG_2039718K7EN88 272 aa16.82■□□□□ 0.28
PHRF1-202ENST00000413872 LYNP07948 512 aa16.82■□□□□ 0.28
PHRF1-202ENST00000413872 HNF1BP35680 557 aa16.82■□□□□ 0.28
PHRF1-202ENST00000413872 DENND5AQ6IQ26 1287 aa16.82■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms