RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 OR5K4A6NMS3 321 aa13.02□□□□□ -0.33
LIMS1-204ENST00000409441 OR52A4PA6NMU1 304 aa13.02□□□□□ -0.33
LIMS1-204ENST00000409441 C4orf47A7E2U8 309 aa13.02□□□□□ -0.33
LIMS1-204ENST00000409441 B4DGG1 531 aa13.02□□□□□ -0.33
LIMS1-204ENST00000409441 SUPT3HB4E1H0 165 aa13.02□□□□□ -0.33
LIMS1-204ENST00000409441 EIF3FO00303 357 aaPredicted RBP13.02□□□□□ -0.33
LIMS1-204ENST00000409441 IFRD1O00458 451 aaPredicted RBP13.02□□□□□ -0.33
LIMS1-204ENST00000409441 TRIM38O00635 465 aa13.02□□□□□ -0.33
LIMS1-204ENST00000409441 AIM2O14862 343 aa13.02□□□□□ -0.33
LIMS1-204ENST00000409441 UBDO15205 165 aa13.02□□□□□ -0.33
LIMS1-204ENST00000409441 GDF9O60383 454 aa13.02□□□□□ -0.33
LIMS1-204ENST00000409441 SUPT3HO75486 399 aa13.02□□□□□ -0.33
LIMS1-204ENST00000409441 RPS17P08708 135 aaKnown RBP13.02□□□□□ -0.33
LIMS1-204ENST00000409441 ENO3P13929 434 aaPredicted RBP13.02□□□□□ -0.33
LIMS1-204ENST00000409441 STX5Q13190 355 aa13.02□□□□□ -0.33
LIMS1-204ENST00000409441 SLC14A1Q13336 389 aa13.02□□□□□ -0.33
LIMS1-204ENST00000409441 RPE65Q16518 533 aa13.02□□□□□ -0.33
LIMS1-204ENST00000409441 PFKFB4Q16877 469 aa13.02□□□□□ -0.33
LIMS1-204ENST00000409441 MUM1Q2TAK8 710 aa13.02□□□□□ -0.33
LIMS1-204ENST00000409441 BNC2Q6ZN30 1099 aaPredicted RBP13.02□□□□□ -0.33
LIMS1-204ENST00000409441 EFL1Q7Z2Z2 1120 aaKnown RBP13.02□□□□□ -0.33
LIMS1-204ENST00000409441 PDZD3Q86UT5 571 aa13.02□□□□□ -0.33
LIMS1-204ENST00000409441 DSELQ8IZU8 1212 aa13.02□□□□□ -0.33
LIMS1-204ENST00000409441 NAGSQ8N159 534 aa13.02□□□□□ -0.33
LIMS1-204ENST00000409441 OR4C6Q8NH72 309 aa13.02□□□□□ -0.33
LIMS1-204ENST00000409441 PATE1Q8WXA2 126 aa13.02□□□□□ -0.33
LIMS1-204ENST00000409441 DNAJC9Q8WXX5 260 aa13.02□□□□□ -0.33
LIMS1-204ENST00000409441 TFGQ92734 400 aaPredicted RBP13.02□□□□□ -0.33
LIMS1-204ENST00000409441 EXT2Q93063 718 aa13.02□□□□□ -0.33
LIMS1-204ENST00000409441 LINGO1Q96FE5 620 aa13.02□□□□□ -0.33
LIMS1-204ENST00000409441 PDLIM5Q96HC4 596 aaKnown RBP13.02□□□□□ -0.33
LIMS1-204ENST00000409441 DUSP23Q9BVJ7 150 aa13.02□□□□□ -0.33
LIMS1-204ENST00000409441 S100A14Q9HCY8 104 aa13.02□□□□□ -0.33
LIMS1-204ENST00000409441 TNFRSF12AQ9NP84 129 aa13.02□□□□□ -0.33
LIMS1-204ENST00000409441 ZNF624Q9P2J8 865 aaPredicted RBP13.02□□□□□ -0.33
LIMS1-204ENST00000409441 G3BP2Q9UN86 482 aaKnown RBP13.02□□□□□ -0.33
LIMS1-204ENST00000409441 POMPQ9Y244 141 aa13.02□□□□□ -0.33
LIMS1-204ENST00000409441 CFAP20Q9Y6A4 193 aaKnown RBP13.02□□□□□ -0.33
LIMS1-204ENST00000409441 LAMA1P25391 3075 aa13.02□□□□□ -0.33
LIMS1-204ENST00000409441 AZIN1O14977 448 aa13.01□□□□□ -0.33
LIMS1-204ENST00000409441 VPS4BO75351 444 aa13.01□□□□□ -0.33
LIMS1-204ENST00000409441 MATN4O95460 622 aa13.01□□□□□ -0.33
LIMS1-204ENST00000409441 TSPAN12O95859 305 aa13.01□□□□□ -0.33
LIMS1-204ENST00000409441 RPSAP08865 295 aaKnown RBP13.01□□□□□ -0.33
LIMS1-204ENST00000409441 MPC1LP0DKB6 136 aa13.01□□□□□ -0.33
LIMS1-204ENST00000409441 ALPPL2P10696 532 aa13.01□□□□□ -0.33
LIMS1-204ENST00000409441 SLC2A4P14672 509 aa13.01□□□□□ -0.33
LIMS1-204ENST00000409441 SESN3P58005 492 aa13.01□□□□□ -0.33
LIMS1-204ENST00000409441 ART3Q13508 389 aa13.01□□□□□ -0.33
LIMS1-204ENST00000409441 CCNIQ14094 377 aa13.01□□□□□ -0.33
LIMS1-204ENST00000409441 UGT3A2Q3SY77 523 aa13.01□□□□□ -0.33
LIMS1-204ENST00000409441 C6orf132Q5T0Z8 1188 aa13.01□□□□□ -0.33
LIMS1-204ENST00000409441 ANKS6Q68DC2 871 aa13.01□□□□□ -0.33
LIMS1-204ENST00000409441 NEK10Q6ZWH5 1172 aa13.01□□□□□ -0.33
LIMS1-204ENST00000409441 LARP4Q71RC2 724 aaKnown RBP eCLIP13.01□□□□□ -0.33
LIMS1-204ENST00000409441 SFRP1Q8N474 314 aa13.01□□□□□ -0.33
LIMS1-204ENST00000409441 PHC3Q8NDX5 983 aa13.01□□□□□ -0.33
LIMS1-204ENST00000409441 RCN3Q96D15 328 aa13.01□□□□□ -0.33
LIMS1-204ENST00000409441 C19orf60Q96EN9 201 aa13.01□□□□□ -0.33
LIMS1-204ENST00000409441 C12orf66Q96MD2 445 aa13.01□□□□□ -0.33
LIMS1-204ENST00000409441 BATF3Q9NR55 127 aa13.01□□□□□ -0.33
LIMS1-204ENST00000409441 IMP3Q9NV31 184 aaKnown RBP13.01□□□□□ -0.33
LIMS1-204ENST00000409441 NMRK1Q9NWW6 199 aa13.01□□□□□ -0.33
LIMS1-204ENST00000409441 FIS1Q9Y3D6 152 aa13.01□□□□□ -0.33
LIMS1-204ENST00000409441 KIR2DS5A0A0G2JLQ3 304 aa13□□□□□ -0.33
LIMS1-204ENST00000409441 A0A0G2JNG1 304 aa13□□□□□ -0.33
LIMS1-204ENST00000409441 KIR2DS3K7RE56 304 aa13□□□□□ -0.33
LIMS1-204ENST00000409441 MAP3K7O43318 606 aa13□□□□□ -0.33
LIMS1-204ENST00000409441 SIGLEC6O43699 453 aa13□□□□□ -0.33
LIMS1-204ENST00000409441 NOBOXO60393 691 aa13□□□□□ -0.33
LIMS1-204ENST00000409441 PDE5AO76074 875 aa13□□□□□ -0.33
LIMS1-204ENST00000409441 CD59P13987 128 aa13□□□□□ -0.33
LIMS1-204ENST00000409441 XRCC1P18887 633 aaPredicted RBP13□□□□□ -0.33
LIMS1-204ENST00000409441 SLC19A1P41440 591 aa13□□□□□ -0.33
LIMS1-204ENST00000409441 ACADVLP49748 655 aa13□□□□□ -0.33
LIMS1-204ENST00000409441 CLCQ05315 142 aa13□□□□□ -0.33
LIMS1-204ENST00000409441 LCP2Q13094 533 aa13□□□□□ -0.33
LIMS1-204ENST00000409441 KIR2DS5Q14953 304 aa13□□□□□ -0.33
LIMS1-204ENST00000409441 TSNQ15631 228 aaKnown RBP13□□□□□ -0.33
LIMS1-204ENST00000409441 KANK2Q63ZY3 851 aa13□□□□□ -0.33
LIMS1-204ENST00000409441 ZCCHC8Q6NZY4 707 aaKnown RBP13□□□□□ -0.33
LIMS1-204ENST00000409441 RPS27LQ71UM5 84 aaKnown RBP13□□□□□ -0.33
LIMS1-204ENST00000409441 MYO1HQ8N1T3 1032 aa13□□□□□ -0.33
LIMS1-204ENST00000409441 ARL14Q8N4G2 192 aa13□□□□□ -0.33
LIMS1-204ENST00000409441 GPR156Q8NFN8 814 aa13□□□□□ -0.33
LIMS1-204ENST00000409441 SETD7Q8WTS6 366 aaKnown RBP13□□□□□ -0.33
LIMS1-204ENST00000409441 NRG4Q8WWG1 115 aa13□□□□□ -0.33
LIMS1-204ENST00000409441 ASB11Q8WXH4 323 aa13□□□□□ -0.33
LIMS1-204ENST00000409441 MARK4Q96L34 752 aa13□□□□□ -0.33
LIMS1-204ENST00000409441 FOPNLQ96NB1 174 aa13□□□□□ -0.33
LIMS1-204ENST00000409441 FERD3LQ96RJ6 166 aa13□□□□□ -0.33
LIMS1-204ENST00000409441 MRPL1Q9BYD6 325 aaKnown RBP13□□□□□ -0.33
LIMS1-204ENST00000409441 MID1IP1Q9NPA3 183 aa13□□□□□ -0.33
LIMS1-204ENST00000409441 CPNE7Q9UBL6 633 aa13□□□□□ -0.33
LIMS1-204ENST00000409441 ASF1AQ9Y294 204 aa13□□□□□ -0.33
LIMS1-204ENST00000409441 BTBD3Q9Y2F9 522 aa13□□□□□ -0.33
LIMS1-204ENST00000409441 PRAMEF33A0A0G2JMD5 474 aa12.99□□□□□ -0.33
LIMS1-204ENST00000409441 PSMD12O00232 456 aaPredicted RBP12.99□□□□□ -0.33
LIMS1-204ENST00000409441 BTN3A1O00481 513 aa12.99□□□□□ -0.33
LIMS1-204ENST00000409441 GFRA3O60609 400 aa12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms