RNA–Protein interactions for RNA: ENST00000397906.6

TTC28-201, Transcript of tetratricopeptide repeat domain 28, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene TTC28, Length 11,795 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-201ENST00000397906 LOC110117498-PIK3R3F6TDL0 507 aa11.08□□□□□ -0.64
TTC28-201ENST00000397906 GPR33Q49SQ1 333 aa11.08□□□□□ -0.64
TTC28-201ENST00000397906 ZNF311Q5JNZ3 666 aa11.08□□□□□ -0.64
TTC28-201ENST00000397906 LCN1P1Q5VSP4 162 aa11.08□□□□□ -0.64
TTC28-201ENST00000397906 TXNRD3NBQ6F5E7 133 aa11.08□□□□□ -0.64
TTC28-201ENST00000397906 LPGAT1Q92604 370 aa11.08□□□□□ -0.64
TTC28-201ENST00000397906 CDKN2AIPNLQ96HQ2 116 aa11.08□□□□□ -0.64
TTC28-201ENST00000397906 TCRBV7S3A2A0A539 114 aa11.08□□□□□ -0.64
TTC28-201ENST00000397906 WASHC1A8K0Z3 465 aa11.08□□□□□ -0.64
TTC28-201ENST00000397906 WASH3PC4AMC7 463 aa11.08□□□□□ -0.64
TTC28-201ENST00000397906 PLEKHG6Q3KR16 790 aa11.08□□□□□ -0.64
TTC28-201ENST00000397906 ANKRD26P1Q6NSI1 321 aa11.08□□□□□ -0.64
TTC28-201ENST00000397906 KIAA1161Q6NSJ0 714 aa11.08□□□□□ -0.64
TTC28-201ENST00000397906 WASH2PQ6VEQ5 465 aa11.08□□□□□ -0.64
TTC28-201ENST00000397906 SPATC1Q76KD6 591 aa11.08□□□□□ -0.64
TTC28-201ENST00000397906 SAMD14Q8IZD0 417 aaPredicted RBP11.08□□□□□ -0.64
TTC28-201ENST00000397906 RFKQ969G6 155 aa11.08□□□□□ -0.64
TTC28-201ENST00000397906 SMOQ99835 787 aa11.08□□□□□ -0.64
TTC28-201ENST00000397906 TTYH3Q9C0H2 523 aa11.08□□□□□ -0.64
TTC28-201ENST00000397906 ZNF282Q9UDV7 671 aaPredicted RBP11.08□□□□□ -0.64
TTC28-201ENST00000397906 SNX7Q9UNH6 387 aa11.08□□□□□ -0.64
TTC28-201ENST00000397906 CNTN6Q9UQ52 1028 aa11.08□□□□□ -0.64
TTC28-201ENST00000397906 NKD2Q969F2 451 aaPredicted RBP11.08□□□□□ -0.64
TTC28-201ENST00000397906 FCRL5Q96RD9 977 aa11.08□□□□□ -0.64
TTC28-201ENST00000397906 C19orf25Q9UFG5 118 aaPredicted RBP11.08□□□□□ -0.64
TTC28-201ENST00000397906 HSFX4A0A1B0GTS1 333 aaPredicted RBP11.08□□□□□ -0.64
TTC28-201ENST00000397906 HSFX3A0A1B0GWH4 333 aaPredicted RBP11.08□□□□□ -0.64
TTC28-201ENST00000397906 GIN1Q9NXP7 522 aa11.08□□□□□ -0.64
TTC28-201ENST00000397906 VPS29Q9UBQ0 182 aa11.08□□□□□ -0.64
TTC28-201ENST00000397906 DUOX1Q9NRD9 1551 aa11.08□□□□□ -0.64
TTC28-201ENST00000397906 FAM221BA6H8Z2 402 aa11.07□□□□□ -0.64
TTC28-201ENST00000397906 CBX3Q13185 183 aa11.07□□□□□ -0.64
TTC28-201ENST00000397906 RBM44Q6ZP01 1051 aaKnown RBP11.07□□□□□ -0.64
TTC28-201ENST00000397906 SORCS1Q8WY21 1168 aa11.07□□□□□ -0.64
TTC28-201ENST00000397906 CMTM7Q96FZ5 175 aa11.07□□□□□ -0.64
TTC28-201ENST00000397906 LDHAL6BQ9BYZ2 381 aaPredicted RBP11.07□□□□□ -0.64
TTC28-201ENST00000397906 PRAMEF12O95522 483 aa11.07□□□□□ -0.64
TTC28-201ENST00000397906 CA3P07451 260 aa11.07□□□□□ -0.64
TTC28-201ENST00000397906 SLC10A3P09131 477 aa11.07□□□□□ -0.64
TTC28-201ENST00000397906 ADGRE1Q14246 886 aa11.07□□□□□ -0.64
TTC28-201ENST00000397906 MEIOBQ8N635 442 aa11.07□□□□□ -0.64
TTC28-201ENST00000397906 TXNDC5Q8NBS9 432 aaKnown RBP11.07□□□□□ -0.64
TTC28-201ENST00000397906 BLOC1S5-TXNDC5H3BN57 136 aa11.07□□□□□ -0.64
TTC28-201ENST00000397906 UNGP13051 313 aaPredicted RBP11.07□□□□□ -0.64
TTC28-201ENST00000397906 B3GNT6Q6ZMB0 384 aa11.07□□□□□ -0.64
TTC28-201ENST00000397906 LIN28BQ6ZN17 250 aaKnown RBP eCLIP11.07□□□□□ -0.64
TTC28-201ENST00000397906 NTAN1Q96AB6 310 aa11.07□□□□□ -0.64
TTC28-201ENST00000397906 NTPCRQ9BSD7 190 aaKnown RBP11.07□□□□□ -0.64
TTC28-201ENST00000397906 CSNK2A2P19784 350 aaPredicted RBP11.07□□□□□ -0.64
TTC28-201ENST00000397906 NR4A1P22736 598 aa11.07□□□□□ -0.64
TTC28-201ENST00000397906 VIPR2P41587 438 aa11.07□□□□□ -0.64
TTC28-201ENST00000397906 RPS27LQ71UM5 84 aaKnown RBP11.07□□□□□ -0.64
TTC28-201ENST00000397906 CMTR2Q8IYT2 770 aaKnown RBP11.07□□□□□ -0.64
TTC28-201ENST00000397906 SGCDQ92629 289 aa11.07□□□□□ -0.64
TTC28-201ENST00000397906 TRIM2Q9C040 744 aa11.07□□□□□ -0.64
TTC28-201ENST00000397906 RPP14O95059 124 aaKnown RBP11.07□□□□□ -0.64
TTC28-201ENST00000397906 KIAA0930Q6ICG6 404 aaPredicted RBP11.07□□□□□ -0.64
TTC28-201ENST00000397906 RBM15BQ8NDT2 890 aaKnown RBP11.07□□□□□ -0.64
TTC28-201ENST00000397906 IL1RAPQ9NPH3 570 aa11.07□□□□□ -0.64
TTC28-201ENST00000397906 FZD4Q9ULV1 537 aa11.07□□□□□ -0.64
TTC28-201ENST00000397906 DYTNA2CJ06 578 aa11.07□□□□□ -0.64
TTC28-201ENST00000397906 WRBO00258 174 aa11.07□□□□□ -0.64
TTC28-201ENST00000397906 TAF4O00268 1085 aa11.07□□□□□ -0.64
TTC28-201ENST00000397906 ZNF432O94892 652 aa11.07□□□□□ -0.64
TTC28-201ENST00000397906 ZNF3P17036 446 aa11.07□□□□□ -0.64
TTC28-201ENST00000397906 ZNF30P17039 623 aa11.07□□□□□ -0.64
TTC28-201ENST00000397906 HSF2Q03933 536 aa11.07□□□□□ -0.64
TTC28-201ENST00000397906 DENND5AQ6IQ26 1287 aa11.07□□□□□ -0.64
TTC28-201ENST00000397906 ZDHHC21Q8IVQ6 265 aa11.07□□□□□ -0.64
TTC28-201ENST00000397906 C17orf62Q9BQA9 187 aa11.07□□□□□ -0.64
TTC28-201ENST00000397906 FADS3Q9Y5Q0 445 aa11.07□□□□□ -0.64
TTC28-201ENST00000397906 RPS21P63220 83 aaKnown RBP11.07□□□□□ -0.64
TTC28-201ENST00000397906 DMPKQ09013 629 aa11.07□□□□□ -0.64
TTC28-201ENST00000397906 PGBD2Q6P3X8 592 aa11.07□□□□□ -0.64
TTC28-201ENST00000397906 DGLUCYQ7Z3D6 616 aa11.07□□□□□ -0.64
TTC28-201ENST00000397906 PXYLP1Q8TE99 480 aa11.07□□□□□ -0.64
TTC28-201ENST00000397906 KCTD13Q8WZ19 329 aa11.07□□□□□ -0.64
TTC28-201ENST00000397906 GPR62Q9BZJ7 368 aa11.07□□□□□ -0.64
TTC28-201ENST00000397906 B3GAT2Q9NPZ5 323 aa11.07□□□□□ -0.64
TTC28-201ENST00000397906 EIF2B3Q9NR50 452 aaKnown RBP11.07□□□□□ -0.64
TTC28-201ENST00000397906 PLCL2Q9UPR0 1127 aa11.07□□□□□ -0.64
TTC28-201ENST00000397906 RGS10O43665 173 aa11.07□□□□□ -0.64
TTC28-201ENST00000397906 FAUP35544 74 aaKnown RBP11.07□□□□□ -0.64
TTC28-201ENST00000397906 DECR1Q16698 335 aa11.07□□□□□ -0.64
TTC28-201ENST00000397906 ZNF662Q6ZS27 426 aa11.07□□□□□ -0.64
TTC28-201ENST00000397906 ANKFN1Q8N957 763 aa11.07□□□□□ -0.64
TTC28-201ENST00000397906 CDC40O60508 579 aaKnown RBP eCLIP11.07□□□□□ -0.64
TTC28-201ENST00000397906 OR4F3Q6IEY1 312 aa11.07□□□□□ -0.64
TTC28-201ENST00000397906 FOXR2Q6PJQ5 311 aa11.07□□□□□ -0.64
TTC28-201ENST00000397906 ARMC10Q8N2F6 343 aa11.07□□□□□ -0.64
TTC28-201ENST00000397906 MREGQ8N565 214 aa11.07□□□□□ -0.64
TTC28-201ENST00000397906 DCAKDQ8WVC6 231 aa11.07□□□□□ -0.64
TTC28-201ENST00000397906 CCNB1IP1Q9NPC3 277 aa11.07□□□□□ -0.64
TTC28-201ENST00000397906 SDHAF3Q9NRP4 125 aa11.07□□□□□ -0.64
TTC28-201ENST00000397906 OR6C74A6NCV1 312 aa11.07□□□□□ -0.64
TTC28-201ENST00000397906 USP53Q70EK8 1073 aa11.07□□□□□ -0.64
TTC28-201ENST00000397906 PAAF1Q9BRP4 392 aa11.07□□□□□ -0.64
TTC28-201ENST00000397906 RASGEF1BQ0VAM2 473 aa11.06□□□□□ -0.64
TTC28-201ENST00000397906 PRKD1Q15139 912 aaPredicted RBP11.06□□□□□ -0.64
TTC28-201ENST00000397906 IFT80Q9P2H3 777 aaPredicted RBP11.06□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 94.3 ms