RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 TXLNGYQ9BZA5 131 aa20.86■□□□□ 0.93
CLN3-207ENST00000395653 SLC6A20Q9NP91 592 aa20.86■□□□□ 0.93
CLN3-207ENST00000395653 EURLQ9NYK6 297 aa20.86■□□□□ 0.93
CLN3-207ENST00000395653 OARD1Q9Y530 152 aa20.86■□□□□ 0.93
CLN3-207ENST00000395653 PTPRQQ9UMZ3 2332 aa20.85■□□□□ 0.93
CLN3-207ENST00000395653 OR2B3O76000 313 aa20.85■□□□□ 0.93
CLN3-207ENST00000395653 INHBAP08476 426 aa20.85■□□□□ 0.93
CLN3-207ENST00000395653 CCNYL3P0C7X3 344 aa20.85■□□□□ 0.93
CLN3-207ENST00000395653 PMS2P54278 862 aa20.85■□□□□ 0.93
CLN3-207ENST00000395653 ATP6V0D1P61421 351 aa20.85■□□□□ 0.93
CLN3-207ENST00000395653 YBX1P67809 324 aaKnown RBP20.85■□□□□ 0.93
CLN3-207ENST00000395653 CDKL1Q00532 357 aa20.85■□□□□ 0.93
CLN3-207ENST00000395653 PRAMEF13Q5VWM6 474 aa20.85■□□□□ 0.93
CLN3-207ENST00000395653 CCDC81Q6ZN84 652 aa20.85■□□□□ 0.93
CLN3-207ENST00000395653 RAPH1Q70E73 1250 aa20.85■□□□□ 0.93
CLN3-207ENST00000395653 CCDC91Q7Z6B0 441 aa20.85■□□□□ 0.93
CLN3-207ENST00000395653 CMC1Q7Z7K0 106 aa20.85■□□□□ 0.93
CLN3-207ENST00000395653 RNF31Q96EP0 1072 aa20.85■□□□□ 0.93
CLN3-207ENST00000395653 UBXN10Q96LJ8 280 aa20.85■□□□□ 0.93
CLN3-207ENST00000395653 PAFAH2Q99487 392 aa20.85■□□□□ 0.93
CLN3-207ENST00000395653 SGPP1Q9BX95 441 aa20.85■□□□□ 0.93
CLN3-207ENST00000395653 ACTR5Q9H9F9 607 aaPredicted RBP20.85■□□□□ 0.93
CLN3-207ENST00000395653 UTP6Q9NYH9 597 aaKnown RBP20.85■□□□□ 0.93
CLN3-207ENST00000395653 AP1M2Q9Y6Q5 423 aa20.85■□□□□ 0.93
CLN3-207ENST00000395653 IGKV1-8A0A0C4DH67 115 aa20.84■□□□□ 0.93
CLN3-207ENST00000395653 HMX2A2RU54 273 aa20.84■□□□□ 0.93
CLN3-207ENST00000395653 RIPK2O43353 540 aa20.84■□□□□ 0.93
CLN3-207ENST00000395653 CTSVO60911 334 aa20.84■□□□□ 0.93
CLN3-207ENST00000395653 HBQ1P09105 142 aa20.84■□□□□ 0.93
CLN3-207ENST00000395653 SLC35E2BP0CK96 405 aa20.84■□□□□ 0.93
CLN3-207ENST00000395653 CD1DP15813 335 aa20.84■□□□□ 0.93
CLN3-207ENST00000395653 SLC26A3P40879 764 aa20.84■□□□□ 0.93
CLN3-207ENST00000395653 CSRP3P50461 194 aa20.84■□□□□ 0.93
CLN3-207ENST00000395653 SRSF6Q13247 344 aaKnown RBP20.84■□□□□ 0.93
CLN3-207ENST00000395653 NAE1Q13564 534 aa20.84■□□□□ 0.93
CLN3-207ENST00000395653 BMPR2Q13873 1038 aa20.84■□□□□ 0.93
CLN3-207ENST00000395653 TSNQ15631 228 aaKnown RBP20.84■□□□□ 0.93
CLN3-207ENST00000395653 MROH9Q5TGP6 573 aa20.84■□□□□ 0.93
CLN3-207ENST00000395653 PRAMEF17Q5VTA0 474 aa20.84■□□□□ 0.93
CLN3-207ENST00000395653 ZNF425Q6IV72 752 aa20.84■□□□□ 0.93
CLN3-207ENST00000395653 TLDC1Q6P9B6 456 aa20.84■□□□□ 0.93
CLN3-207ENST00000395653 RNF44Q7L0R7 432 aa20.84■□□□□ 0.93
CLN3-207ENST00000395653 MCATQ8IVS2 390 aaKnown RBP20.84■□□□□ 0.93
CLN3-207ENST00000395653 SNRNP27Q8WVK2 155 aaKnown RBP20.84■□□□□ 0.93
CLN3-207ENST00000395653 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP20.84■□□□□ 0.935e-8■■■■■ 65.3
CLN3-207ENST00000395653 KIAA1143Q96AT1 154 aaPredicted RBP20.84■□□□□ 0.93
CLN3-207ENST00000395653 MED8Q96G25 268 aa20.84■□□□□ 0.93
CLN3-207ENST00000395653 ATG10Q9H0Y0 220 aa20.84■□□□□ 0.93
CLN3-207ENST00000395653 CPNE5Q9HCH3 593 aa20.84■□□□□ 0.93
CLN3-207ENST00000395653 LHX9Q9NQ69 397 aa20.84■□□□□ 0.93
CLN3-207ENST00000395653 ENAMQ9NRM1 1142 aa20.84■□□□□ 0.93
CLN3-207ENST00000395653 ABCF3Q9NUQ8 709 aa20.84■□□□□ 0.93
CLN3-207ENST00000395653 PADI1Q9ULC6 663 aa20.84■□□□□ 0.93
CLN3-207ENST00000395653 IKBKGQ9Y6K9 419 aa20.84■□□□□ 0.93
CLN3-207ENST00000395653 LOC101059948A0A1B0GTJ6 334 aa20.83■□□□□ 0.93
CLN3-207ENST00000395653 ZSCAN9O15535 394 aaPredicted RBP20.83■□□□□ 0.93
CLN3-207ENST00000395653 EFSO43281 561 aa20.83■□□□□ 0.93
CLN3-207ENST00000395653 ZNF749O43361 778 aa20.83■□□□□ 0.93
CLN3-207ENST00000395653 SLU7O95391 586 aaKnown RBP20.83■□□□□ 0.93
CLN3-207ENST00000395653 GUCA1CO95843 209 aa20.83■□□□□ 0.93
CLN3-207ENST00000395653 MYBL2P10244 700 aa20.83■□□□□ 0.93
CLN3-207ENST00000395653 SERPINB9P50453 376 aa20.83■□□□□ 0.93
CLN3-207ENST00000395653 CXADRP78310 365 aa20.83■□□□□ 0.93
CLN3-207ENST00000395653 RELAQ04206 551 aa20.83■□□□□ 0.93
CLN3-207ENST00000395653 VAC14Q08AM6 782 aa20.83■□□□□ 0.93
CLN3-207ENST00000395653 ZXDCQ2QGD7 858 aaPredicted RBP20.83■□□□□ 0.93
CLN3-207ENST00000395653 CAPN13Q6MZZ7 669 aaPredicted RBP20.83■□□□□ 0.93
CLN3-207ENST00000395653 FRA10AC1Q70Z53 315 aa20.83■□□□□ 0.93
CLN3-207ENST00000395653 TAOK1Q7L7X3 1001 aa20.83■□□□□ 0.93
CLN3-207ENST00000395653 PAQR7Q86WK9 346 aa20.83■□□□□ 0.93
CLN3-207ENST00000395653 GSPT2Q8IYD1 628 aaKnown RBP20.83■□□□□ 0.93
CLN3-207ENST00000395653 SLC38A9Q8NBW4 561 aa20.83■□□□□ 0.93
CLN3-207ENST00000395653 OR56A3Q8NH54 315 aa20.83■□□□□ 0.93
CLN3-207ENST00000395653 CRELD1Q96HD1 420 aa20.83■□□□□ 0.93
CLN3-207ENST00000395653 ZNF285Q96NJ3 590 aa20.83■□□□□ 0.93
CLN3-207ENST00000395653 PLCD4Q9BRC7 762 aa20.83■□□□□ 0.93
CLN3-207ENST00000395653 EFHD1Q9BUP0 239 aa20.83■□□□□ 0.93
CLN3-207ENST00000395653 SPRTNQ9H040 489 aaPredicted RBP20.83■□□□□ 0.93
CLN3-207ENST00000395653 PRORYQ9H606 182 aa20.83■□□□□ 0.93
CLN3-207ENST00000395653 ANKZF1Q9H8Y5 726 aa20.83■□□□□ 0.93
CLN3-207ENST00000395653 SNX15Q9NRS6 342 aa20.83■□□□□ 0.93
CLN3-207ENST00000395653 ZNF180Q9UJW8 692 aa20.83■□□□□ 0.93
CLN3-207ENST00000395653 SNX7Q9UNH6 387 aa20.83■□□□□ 0.93
CLN3-207ENST00000395653 K7ENP7 123 aa20.82■□□□□ 0.92
CLN3-207ENST00000395653 SRPX2O60687 465 aaPredicted RBP20.82■□□□□ 0.92
CLN3-207ENST00000395653 ANXA5P08758 320 aa20.82■□□□□ 0.92
CLN3-207ENST00000395653 LIFP15018 202 aa20.82■□□□□ 0.92
CLN3-207ENST00000395653 HRH2P25021 359 aa20.82■□□□□ 0.92
CLN3-207ENST00000395653 RORAP35398 523 aa20.82■□□□□ 0.92
CLN3-207ENST00000395653 MSH2P43246 934 aa20.82■□□□□ 0.92
CLN3-207ENST00000395653 GPS2Q13227 327 aa20.82■□□□□ 0.92
CLN3-207ENST00000395653 CSHL1Q14406 222 aa20.82■□□□□ 0.92
CLN3-207ENST00000395653 TCTE1Q5JU00 501 aa20.82■□□□□ 0.92
CLN3-207ENST00000395653 INO80CQ6PI98 192 aaPredicted RBP20.82■□□□□ 0.92
CLN3-207ENST00000395653 LCTLQ6UWM7 567 aa20.82■□□□□ 0.92
CLN3-207ENST00000395653 ZNF517Q6ZMY9 492 aaPredicted RBP20.82■□□□□ 0.92
CLN3-207ENST00000395653 TBC1D1Q86TI0 1168 aaPredicted RBP20.82■□□□□ 0.92
CLN3-207ENST00000395653 SPATA6LQ8N4H0 392 aa20.82■□□□□ 0.92
CLN3-207ENST00000395653 UHMK1Q8TAS1 419 aaKnown RBP20.82■□□□□ 0.92
CLN3-207ENST00000395653 CLIP3Q96DZ5 547 aa20.82■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms